RNA–Protein interactions for RNA: ENST00000378518.5

RER1-204, Transcript of retention in endoplasmic reticulum sorting receptor 1, humanhuman

TSL 3 BASIC

Gene RER1, Length 522 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RER1-204ENST00000378518 NISCHQ9Y2I1 1504 aa48.13■■■■■ 5.3
RER1-204ENST00000378518 CCDC180Q9P1Z9 1646 aa42.8■■■■■ 4.44
RER1-204ENST00000378518 ABCC9O60706 1549 aa41.51■■■■■ 4.24
RER1-204ENST00000378518 ZCCHC6Q5VYS8 1495 aaKnown RBP40.16■■■■■ 4.02
RER1-204ENST00000378518 RB1CC1Q8TDY2 1594 aa40.13■■■■■ 4.01
RER1-204ENST00000378518 NACADO15069 1562 aa40.12■■■■■ 4.01
RER1-204ENST00000378518 DCAF8L2P0C7V8 631 aa40.09■■■■■ 4.01
RER1-204ENST00000378518 MYO15BQ96JP2 1530 aa39.94■■■■□ 3.98
RER1-204ENST00000378518 DCAF1Q9Y4B6 1507 aa39.86■■■■□ 3.97
RER1-204ENST00000378518 UNC13AQ9UPW8 1703 aa39.26■■■■□ 3.88
RER1-204ENST00000378518 SCRIBQ14160 1630 aa39.02■■■■□ 3.84
RER1-204ENST00000378518 BICRAQ9NZM4 1560 aa38.82■■■■□ 3.8
RER1-204ENST00000378518 PABPN1Q86U42 306 aaKnown RBP eCLIP38.77■■■■□ 3.8
RER1-204ENST00000378518 SHROOM4Q9ULL8 1493 aa38.52■■■■□ 3.76
RER1-204ENST00000378518 EIF4G1Q04637 1599 aaKnown RBP37.81■■■■□ 3.64
RER1-204ENST00000378518 DNAJC5BQ9UF47 199 aa37.73■■■■□ 3.63
RER1-204ENST00000378518 CC2D2AQ9P2K1 1620 aa37.61■■■■□ 3.61
RER1-204ENST00000378518 CECR2Q9BXF3 1484 aa37.41■■■■□ 3.58
RER1-204ENST00000378518 BAZ1AQ9NRL2 1556 aaPredicted RBP37.34■■■■□ 3.57
RER1-204ENST00000378518 SMARCA4P51532 1647 aa37.34■■■■□ 3.57
RER1-204ENST00000378518 MROH2BQ7Z745 1585 aa37.08■■■■□ 3.53
RER1-204ENST00000378518 SMARCA2P51531 1590 aa37.05■■■■□ 3.52
RER1-204ENST00000378518 ATAD2BQ9ULI0 1458 aa37.01■■■■□ 3.51
RER1-204ENST00000378518 PEG3Q9GZU2 1588 aa36.95■■■■□ 3.51
RER1-204ENST00000378518 NCAPD3P42695 1498 aa36.94■■■■□ 3.5
RER1-204ENST00000378518 HMGXB3Q12766 1538 aa36.86■■■■□ 3.49
RER1-204ENST00000378518 BAZ1BQ9UIG0 1483 aaKnown RBP36.78■■■■□ 3.48
RER1-204ENST00000378518 WIZO95785 1651 aa36.75■■■■□ 3.47
RER1-204ENST00000378518 RSF1Q96T23 1441 aaPredicted RBP36.72■■■■□ 3.47
RER1-204ENST00000378518 TOP2AP11388 1531 aaKnown RBP36.38■■■■□ 3.41
RER1-204ENST00000378518 LAMC3Q9Y6N6 1575 aa36.02■■■■□ 3.36
RER1-204ENST00000378518 SUPT5HO00267 1087 aaKnown RBP35.99■■■■□ 3.35
RER1-204ENST00000378518 NESP48681 1621 aa35.97■■■■□ 3.35
RER1-204ENST00000378518 CCDC88BA6NC98 1476 aa35.89■■■■□ 3.34
RER1-204ENST00000378518 CADPSQ9ULU8 1353 aa35.89■■■■□ 3.34
RER1-204ENST00000378518 ERCC6Q03468 1493 aa35.82■■■■□ 3.32
RER1-204ENST00000378518 PDS5BQ9NTI5 1447 aa35.73■■■■□ 3.31
RER1-204ENST00000378518 CFTRP13569 1480 aa35.73■■■■□ 3.31
RER1-204ENST00000378518 PRDM2Q13029 1718 aa35.69■■■■□ 3.3
RER1-204ENST00000378518 KIF21AQ7Z4S6 1674 aa35.68■■■■□ 3.3
RER1-204ENST00000378518 FANCD2Q9BXW9 1451 aa35.5■■■■□ 3.27
RER1-204ENST00000378518 CEP164Q9UPV0 1460 aa35.47■■■■□ 3.27
RER1-204ENST00000378518 THOC2Q8NI27 1593 aaKnown RBP35.46■■■■□ 3.27
RER1-204ENST00000378518 MRC2Q9UBG0 1479 aa35.35■■■■□ 3.25
RER1-204ENST00000378518 CUX2O14529 1486 aa35.34■■■■□ 3.25
RER1-204ENST00000378518 WDR62O43379 1518 aa35.23■■■■□ 3.23
RER1-204ENST00000378518 URB2Q14146 1524 aaKnown RBP35.11■■■■□ 3.21
RER1-204ENST00000378518 ABCC8Q09428 1581 aa35.03■■■■□ 3.2
RER1-204ENST00000378518 DNMBPQ6XZF7 1577 aa35■■■■□ 3.19
RER1-204ENST00000378518 TOPBP1Q92547 1522 aa34.96■■■■□ 3.19
RER1-204ENST00000378518 CUX1P39880 1505 aa34.78■■■■□ 3.16
RER1-204ENST00000378518 IFT140Q96RY7 1462 aa34.71■■■■□ 3.15
RER1-204ENST00000378518 POLA1P09884 1462 aaPredicted RBP34.67■■■■□ 3.14
RER1-204ENST00000378518 WRNQ14191 1432 aaPredicted RBP eCLIP34.67■■■■□ 3.144e-8■■■■■ 27.9
RER1-204ENST00000378518 FGD5Q6ZNL6 1462 aa34.65■■■■□ 3.14
RER1-204ENST00000378518 BIVM-ERCC5R4GMW8 1640 aa34.63■■■■□ 3.13
RER1-204ENST00000378518 TOP2BQ02880 1626 aa34.6■■■■□ 3.13
RER1-204ENST00000378518 SYNJ1O43426 1573 aa34.58■■■■□ 3.13
RER1-204ENST00000378518 TARBP1Q13395 1621 aaKnown RBP34.58■■■■□ 3.13
RER1-204ENST00000378518 SOGA1O94964 1423 aa34.54■■■■□ 3.12
RER1-204ENST00000378518 RAD54L2Q9Y4B4 1467 aa34.5■■■■□ 3.11
RER1-204ENST00000378518 ZNF608Q9ULD9 1512 aaPredicted RBP34.46■■■■□ 3.11
RER1-204ENST00000378518 EIF4G3O43432 1585 aaKnown RBP34.44■■■■□ 3.1
RER1-204ENST00000378518 WDR97A6NE52 1622 aa34.41■■■■□ 3.1
RER1-204ENST00000378518 ABCA10Q8WWZ4 1543 aa34.32■■■■□ 3.08
RER1-204ENST00000378518 AQRO60306 1485 aaKnown RBP eCLIP34.3■■■■□ 3.08
RER1-204ENST00000378518 TDRD9Q8NDG6 1382 aaKnown RBP34.27■■■■□ 3.08
RER1-204ENST00000378518 ABCA5Q8WWZ7 1642 aa34.19■■■■□ 3.06
RER1-204ENST00000378518 PBRM1Q86U86 1689 aa34.19■■■■□ 3.06
RER1-204ENST00000378518 GAPVD1Q14C86 1478 aa34.16■■■■□ 3.06
RER1-204ENST00000378518 GRIN2BQ13224 1484 aa34.13■■■■□ 3.05
RER1-204ENST00000378518 SNAPC4Q5SXM2 1469 aa34.04■■■■□ 3.04
RER1-204ENST00000378518 MAGI1Q96QZ7 1491 aaPredicted RBP34.03■■■■□ 3.04
RER1-204ENST00000378518 TRIM41Q8WV44 630 aa34.02■■■■□ 3.04
RER1-204ENST00000378518 CHD1O14646 1710 aa33.99■■■■□ 3.03
RER1-204ENST00000378518 ERICH3Q5RHP9 1530 aa33.94■■■■□ 3.02
RER1-204ENST00000378518 KIF27Q86VH2 1401 aa33.94■■■■□ 3.02
RER1-204ENST00000378518 SYNJ2O15056 1496 aa33.88■■■■□ 3.01
RER1-204ENST00000378518 FBLN2P98095 1184 aa33.87■■■■□ 3.01
RER1-204ENST00000378518 OSCARQ8IYS5 282 aa33.87■■■■□ 3.01
RER1-204ENST00000378518 ADAMTS12P58397 1594 aa33.86■■■■□ 3.01
RER1-204ENST00000378518 DNAJC5Q9H3Z4 198 aa33.85■■■■□ 3.01
RER1-204ENST00000378518 CHMP7Q8WUX9 453 aaPredicted RBP33.82■■■■□ 3
RER1-204ENST00000378518 FHAD1B1AJZ9 1412 aa33.78■■■■□ 3
RER1-204ENST00000378518 CUL7Q14999 1698 aa33.75■■■□□ 2.99
RER1-204ENST00000378518 CHIC1Q5VXU3 224 aa33.7■■■□□ 2.99
RER1-204ENST00000378518 IGF1RP08069 1367 aa33.69■■■□□ 2.98
RER1-204ENST00000378518 GRIN2AQ12879 1464 aa33.69■■■□□ 2.98
RER1-204ENST00000378518 RUSC2Q8N2Y8 1516 aa33.63■■■□□ 2.97
RER1-204ENST00000378518 CLASP1Q7Z460 1538 aa33.55■■■□□ 2.96
RER1-204ENST00000378518 CARMIL1Q5VZK9 1371 aa33.54■■■□□ 2.96
RER1-204ENST00000378518 CEP170Q5SW79 1584 aa33.51■■■□□ 2.95
RER1-204ENST00000378518 NUP160Q12769 1436 aa33.5■■■□□ 2.95
RER1-204ENST00000378518 EEA1Q15075 1411 aa33.49■■■□□ 2.95
RER1-204ENST00000378518 RAPGEF2Q9Y4G8 1499 aa33.41■■■□□ 2.94
RER1-204ENST00000378518 RIMBP3CA6NJZ7 1639 aa33.36■■■□□ 2.93
RER1-204ENST00000378518 RIMBP3BA6NNM3 1639 aa33.36■■■□□ 2.93
RER1-204ENST00000378518 RIMBP3Q9UFD9 1639 aa33.36■■■□□ 2.93
RER1-204ENST00000378518 ARHGEF11O15085 1522 aa33.35■■■□□ 2.93
RER1-204ENST00000378518 CSRNP3Q8WYN3 585 aa33.33■■■□□ 2.93
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms