Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 LRRC8C-204ENST00000482063 504 ntTSL 313.43□□□□□ -0.263e-7■■□□□ 12.9
LSM11P83369 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.343e-7■■□□□ 12.9
LSM11P83369 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.343e-7■■□□□ 12.9
LSM11P83369 RNF220-218ENST00000497469 590 ntTSL 212.88□□□□□ -0.353e-7■■□□□ 12.9
LSM11P83369 SPG7-205ENST00000561945 411 ntTSL 312.68□□□□□ -0.383e-7■■□□□ 12.9
LSM11P83369 CAPRIN1-212ENST00000532820 3438 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.393e-7■■□□□ 12.9
LSM11P83369 AC090114.3-201ENST00000479267 829 ntBASIC12.41□□□□□ -0.423e-7■■□□□ 12.9
LSM11P83369 LRRC8C-201ENST00000370454 7218 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.443e-7■■□□□ 12.9
LSM11P83369 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC12.13□□□□□ -0.473e-7■■□□□ 12.9
LSM11P83369 RNF220-202ENST00000355387 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.473e-7■■□□□ 12.9
LSM11P83369 SPG7-207ENST00000563218 654 ntTSL 511.75□□□□□ -0.533e-7■■□□□ 12.9
LSM11P83369 CAPRIN1-202ENST00000389645 3498 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.583e-7■■□□□ 12.9
LSM11P83369 MRS2-203ENST00000378386 3313 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.593e-7■■□□□ 12.9
LSM11P83369 CAPRIN1-208ENST00000530008 580 ntTSL 410.72□□□□□ -0.693e-7■■□□□ 12.9
LSM11P83369 MRS2-204ENST00000443868 3980 ntAPPRIS ALT2 TSL 2 BASIC9.92□□□□□ -0.823e-7■■□□□ 12.9
LSM11P83369 SPG7-216ENST00000567138 1361 ntTSL 29.91□□□□□ -0.823e-7■■□□□ 12.9
LSM11P83369 MRS2-201ENST00000274747 3821 ntAPPRIS ALT2 TSL 2 BASIC9.84□□□□□ -0.833e-7■■□□□ 12.9
LSM11P83369 CAPRIN1-214ENST00000533641 429 ntTSL 49.81□□□□□ -0.843e-7■■□□□ 12.9
LSM11P83369 CAPRIN1-201ENST00000341394 4108 ntAPPRIS P4 TSL 1 (best) BASIC9.75□□□□□ -0.853e-7■■□□□ 12.9
LSM11P83369 CAPRIN1-211ENST00000532755 565 ntTSL 49.51□□□□□ -0.893e-7■■□□□ 12.9
LSM11P83369 RNF220-210ENST00000474394 810 ntTSL 39.4□□□□□ -0.93e-7■■□□□ 12.9
LSM11P83369 CAPRIN1-209ENST00000530820 3454 ntAPPRIS ALT2 TSL 5 BASIC8.25□□□□□ -1.093e-7■■□□□ 12.9
LSM11P83369 HIF1A-AS2-201ENST00000554254 533 ntTSL 3 BASIC8.22□□□□□ -1.093e-7■■□□□ 12.9
LSM11P83369 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.96□□□□□ -1.783e-7■■□□□ 12.9
LSM11P83369 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.293e-75■■□□□ 12.9
LSM11P83369 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.333e-75■■□□□ 12.9
LSM11P83369 SYCP2L-202ENST00000341041 3069 ntTSL 211.23□□□□□ -0.613e-75■■□□□ 12.9
LSM11P83369 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC13.67□□□□□ -0.229e-9■■□□□ 12.8
LSM11P83369 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.259e-9■■□□□ 12.8
LSM11P83369 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.39e-9■■□□□ 12.8
LSM11P83369 HNRNPH1-218ENST00000510678 1996 ntTSL 512.7□□□□□ -0.389e-9■■□□□ 12.8
LSM11P83369 HNRNPH1-223ENST00000514332 2444 ntTSL 212.51□□□□□ -0.419e-9■■□□□ 12.8
LSM11P83369 HNRNPH1-202ENST00000356731 3667 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.419e-9■■□□□ 12.8
LSM11P83369 HNRNPH1-216ENST00000510411 2105 ntTSL 5 BASIC12.34□□□□□ -0.439e-9■■□□□ 12.8
LSM11P83369 HNRNPH1-206ENST00000502904 2913 ntTSL 29.49□□□□□ -0.899e-9■■□□□ 12.8
LSM11P83369 HNRNPH1-227ENST00000515481 5564 ntTSL 25.07□□□□□ -1.69e-9■■□□□ 12.8
LSM11P83369 ASPSCR1-210ENST00000581608 2387 ntTSL 219.49■□□□□ 0.712e-8■■□□□ 12.8
LSM11P83369 ASPSCR1-221ENST00000585274 984 ntTSL 515.62■□□□□ 0.092e-8■■□□□ 12.8
LSM11P83369 ASPSCR1-218ENST00000583744 539 ntTSL 413.36□□□□□ -0.272e-8■■□□□ 12.8
LSM11P83369 ASPSCR1-206ENST00000578361 590 ntTSL 213.12□□□□□ -0.312e-8■■□□□ 12.8
LSM11P83369 ASPSCR1-205ENST00000578236 3277 ntTSL 212.82□□□□□ -0.362e-8■■□□□ 12.8
LSM11P83369 ASPSCR1-217ENST00000583693 3976 ntTSL 212.05□□□□□ -0.482e-8■■□□□ 12.8
LSM11P83369 ASPSCR1-215ENST00000583142 532 ntTSL 39.59□□□□□ -0.872e-8■■□□□ 12.8
LSM11P83369 CDK5RAP3-223ENST00000582114 647 ntTSL 210.13□□□□□ -0.796e-9■■□□□ 12.8
LSM11P83369 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.51e-8■■□□□ 12.8
LSM11P83369 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.07■□□□□ 0.481e-8■■□□□ 12.8
LSM11P83369 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC17.61■□□□□ 0.411e-8■■□□□ 12.8
LSM11P83369 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.11e-8■■□□□ 12.8
LSM11P83369 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.46■□□□□ 0.553e-6■■□□□ 12.8
LSM11P83369 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.293e-6■■□□□ 12.8
LSM11P83369 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.123e-6■■□□□ 12.8
LSM11P83369 RTKN-211ENST00000640304 612 ntTSL 513.88□□□□□ -0.193e-6■■□□□ 12.8
LSM11P83369 RTKN-210ENST00000492013 853 ntTSL 211.51□□□□□ -0.573e-6■■□□□ 12.8
LSM11P83369 COL9A3-205ENST00000466192 2194 ntTSL 217.02■□□□□ 0.317e-10■■□□□ 12.8
LSM11P83369 COL9A3-203ENST00000462700 1237 ntTSL 316.48■□□□□ 0.237e-10■■□□□ 12.8
LSM11P83369 USP6NL-204ENST00000606752 1823 ntTSL 1 (best)19.86■□□□□ 0.773e-6■■□□□ 12.8
LSM11P83369 USP6NL-205ENST00000609104 11377 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.543e-6■■□□□ 12.8
LSM11P83369 MXD3-206ENST00000503782 1854 ntTSL 226.08■■□□□ 1.771e-7■■□□□ 12.8
LSM11P83369 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.461e-7■■□□□ 12.8
LSM11P83369 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC22.25■■□□□ 1.151e-7■■□□□ 12.8
LSM11P83369 MXD3-207ENST00000509339 579 ntTSL 321.45■■□□□ 1.021e-7■■□□□ 12.8
LSM11P83369 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.021e-7■■□□□ 12.8
LSM11P83369 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.08■□□□□ 0.481e-7■■□□□ 12.8
LSM11P83369 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.37■□□□□ 0.852e-8■■□□□ 12.8
LSM11P83369 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.061e-8■■□□□ 12.8
LSM11P83369 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC14.09□□□□□ -0.151e-8■■□□□ 12.8
LSM11P83369 ACIN1-204ENST00000397341 2738 ntTSL 1 (best) BASIC12.84□□□□□ -0.351e-8■■□□□ 12.8
LSM11P83369 ACIN1-202ENST00000338631 2445 ntTSL 1 (best) BASIC12.64□□□□□ -0.391e-8■■□□□ 12.8
LSM11P83369 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.41e-8■■□□□ 12.8
LSM11P83369 ACIN1-222ENST00000557515 2751 ntTSL 5 BASIC11.91□□□□□ -0.51e-8■■□□□ 12.8
LSM11P83369 ACIN1-206ENST00000473758 3540 ntTSL 1 (best)10.69□□□□□ -0.71e-8■■□□□ 12.8
LSM11P83369 ACIN1-223ENST00000605057 4474 ntTSL 1 (best) BASIC10.5□□□□□ -0.731e-8■■□□□ 12.8
LSM11P83369 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.981e-17■■□□□ 12.8
LSM11P83369 WDR90-214ENST00000549024 2257 ntTSL 217.24■□□□□ 0.352e-6■■□□□ 12.8
LSM11P83369 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.262e-6■■□□□ 12.8
LSM11P83369 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC15.82■□□□□ 0.122e-6■■□□□ 12.8
LSM11P83369 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.092e-6■■□□□ 12.8
LSM11P83369 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC15.43■□□□□ 0.062e-6■■□□□ 12.8
LSM11P83369 WDR90-225ENST00000553080 1941 ntTSL 214.9□□□□□ -0.022e-6■■□□□ 12.8
LSM11P83369 WDR90-223ENST00000552728 3133 ntTSL 514.49□□□□□ -0.092e-6■■□□□ 12.8
LSM11P83369 WDR90-207ENST00000547407 3847 ntTSL 212.5□□□□□ -0.412e-6■■□□□ 12.8
LSM11P83369 WDR90-220ENST00000551100 623 ntTSL 212.31□□□□□ -0.442e-6■■□□□ 12.8
LSM11P83369 WDR90-205ENST00000546896 396 ntTSL 312.28□□□□□ -0.442e-6■■□□□ 12.8
LSM11P83369 PHF1-207ENST00000479029 933 ntTSL 214.44□□□□□ -0.17e-8■■□□□ 12.8
LSM11P83369 PHF1-204ENST00000427826 862 ntTSL 313.09□□□□□ -0.317e-8■■□□□ 12.8
LSM11P83369 DAZAP1-207ENST00000589484 3414 ntTSL 211.94□□□□□ -0.54e-7■■□□□ 12.8
LSM11P83369 CCT5-202ENST00000423695 1232 ntTSL 210.41□□□□□ -0.742e-13■■□□□ 12.7
LSM11P83369 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.89■□□□□ 0.456e-10■■□□□ 12.7
LSM11P83369 NSUN5P1-201ENST00000393633 4792 ntTSL 215.81■□□□□ 0.124e-7■■□□□ 12.7
LSM11P83369 NSUN5P1-202ENST00000421140 1535 ntBASIC15.63■□□□□ 0.094e-7■■□□□ 12.7
LSM11P83369 CDK18-213ENST00000504648 2435 ntTSL 215.42■□□□□ 0.066e-10■■□□□ 12.7
LSM11P83369 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.124e-7■■□□□ 12.7
LSM11P83369 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.29□□□□□ -0.124e-7■■□□□ 12.7
LSM11P83369 MAN2C1-229ENST00000566013 775 ntTSL 313.86□□□□□ -0.194e-7■■□□□ 12.7
LSM11P83369 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC13.86□□□□□ -0.194e-7■■□□□ 12.7
LSM11P83369 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.324e-7■■□□□ 12.7
LSM11P83369 CDK18-210ENST00000484080 1040 ntTSL 213□□□□□ -0.336e-10■■□□□ 12.7
LSM11P83369 CDK18-205ENST00000459862 716 ntTSL 212.66□□□□□ -0.386e-10■■□□□ 12.7
LSM11P83369 MICAL1-208ENST00000630715 3678 ntTSL 2 BASIC12.44□□□□□ -0.424e-7■■□□□ 12.7
LSM11P83369 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC12.04□□□□□ -0.484e-7■■□□□ 12.7
Retrieved 100 of 11,495 protein–RNA pairs in 79.6 ms