RNA–Protein interactions for RNA: ENST00000462700.5

COL9A3-203, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 1,237 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-203ENST00000462700 NISCHQ9Y2I1 1504 aa46.04■■■■■ 4.96
COL9A3-203ENST00000462700 CCDC180Q9P1Z9 1646 aa40.96■■■■■ 4.15
COL9A3-203ENST00000462700 ABCC9O60706 1549 aa40.21■■■■■ 4.03
COL9A3-203ENST00000462700 RB1CC1Q8TDY2 1594 aa38.62■■■■□ 3.77
COL9A3-203ENST00000462700 NACADO15069 1562 aa38.55■■■■□ 3.76
COL9A3-203ENST00000462700 DCAF8L2P0C7V8 631 aa38.47■■■■□ 3.75
COL9A3-203ENST00000462700 ZCCHC6Q5VYS8 1495 aaKnown RBP38.35■■■■□ 3.73
COL9A3-203ENST00000462700 MYO15BQ96JP2 1530 aa38.3■■■■□ 3.72
COL9A3-203ENST00000462700 DCAF1Q9Y4B6 1507 aa38.09■■■■□ 3.69
COL9A3-203ENST00000462700 UNC13AQ9UPW8 1703 aa37.7■■■■□ 3.63
COL9A3-203ENST00000462700 PABPN1Q86U42 306 aaKnown RBP eCLIP37.55■■■■□ 3.67e-12■■■□□ 14.9
COL9A3-203ENST00000462700 BICRAQ9NZM4 1560 aa37.47■■■■□ 3.59
COL9A3-203ENST00000462700 SCRIBQ14160 1630 aa37.38■■■■□ 3.57
COL9A3-203ENST00000462700 SHROOM4Q9ULL8 1493 aa37.08■■■■□ 3.53
COL9A3-203ENST00000462700 DNAJC5BQ9UF47 199 aa37.01■■■■□ 3.52
COL9A3-203ENST00000462700 EIF4G1Q04637 1599 aaKnown RBP36.49■■■■□ 3.43
COL9A3-203ENST00000462700 CC2D2AQ9P2K1 1620 aa36.36■■■■□ 3.41
COL9A3-203ENST00000462700 CECR2Q9BXF3 1484 aa36.15■■■■□ 3.38
COL9A3-203ENST00000462700 SMARCA4P51532 1647 aa35.75■■■■□ 3.31
COL9A3-203ENST00000462700 BAZ1AQ9NRL2 1556 aaPredicted RBP35.69■■■■□ 3.3
COL9A3-203ENST00000462700 ATAD2BQ9ULI0 1458 aa35.6■■■■□ 3.29
COL9A3-203ENST00000462700 NCAPD3P42695 1498 aa35.59■■■■□ 3.29
COL9A3-203ENST00000462700 SMARCA2P51531 1590 aa35.53■■■■□ 3.28
COL9A3-203ENST00000462700 MROH2BQ7Z745 1585 aa35.48■■■■□ 3.27
COL9A3-203ENST00000462700 PEG3Q9GZU2 1588 aa35.41■■■■□ 3.26
COL9A3-203ENST00000462700 HMGXB3Q12766 1538 aa35.41■■■■□ 3.26
COL9A3-203ENST00000462700 BAZ1BQ9UIG0 1483 aaKnown RBP35.29■■■■□ 3.24
COL9A3-203ENST00000462700 WIZO95785 1651 aa35.08■■■■□ 3.21
COL9A3-203ENST00000462700 RSF1Q96T23 1441 aaPredicted RBP35.04■■■■□ 3.2
COL9A3-203ENST00000462700 NESP48681 1621 aa34.77■■■■□ 3.16
COL9A3-203ENST00000462700 TOP2AP11388 1531 aaKnown RBP34.71■■■■□ 3.15
COL9A3-203ENST00000462700 ERCC6Q03468 1493 aa34.66■■■■□ 3.14
COL9A3-203ENST00000462700 LAMC3Q9Y6N6 1575 aa34.66■■■■□ 3.14
COL9A3-203ENST00000462700 CADPSQ9ULU8 1353 aa34.54■■■■□ 3.12
COL9A3-203ENST00000462700 PDS5BQ9NTI5 1447 aa34.43■■■■□ 3.1
COL9A3-203ENST00000462700 CUX2O14529 1486 aa34.35■■■■□ 3.09
COL9A3-203ENST00000462700 KIF21AQ7Z4S6 1674 aa34.32■■■■□ 3.08
COL9A3-203ENST00000462700 CFTRP13569 1480 aa34.32■■■■□ 3.08
COL9A3-203ENST00000462700 CCDC88BA6NC98 1476 aa34.3■■■■□ 3.08
COL9A3-203ENST00000462700 THOC2Q8NI27 1593 aaKnown RBP34.28■■■■□ 3.08
COL9A3-203ENST00000462700 FANCD2Q9BXW9 1451 aa34.15■■■■□ 3.06
COL9A3-203ENST00000462700 CEP164Q9UPV0 1460 aa34.12■■■■□ 3.05
COL9A3-203ENST00000462700 MRC2Q9UBG0 1479 aa34.09■■■■□ 3.05
COL9A3-203ENST00000462700 SUPT5HO00267 1087 aaKnown RBP34.03■■■■□ 3.04
COL9A3-203ENST00000462700 WDR62O43379 1518 aa33.99■■■■□ 3.03
COL9A3-203ENST00000462700 PRDM2Q13029 1718 aa33.99■■■■□ 3.03
COL9A3-203ENST00000462700 URB2Q14146 1524 aaKnown RBP33.82■■■■□ 3
COL9A3-203ENST00000462700 TOPBP1Q92547 1522 aa33.58■■■□□ 2.97
COL9A3-203ENST00000462700 ABCC8Q09428 1581 aa33.56■■■□□ 2.96
COL9A3-203ENST00000462700 DNMBPQ6XZF7 1577 aa33.54■■■□□ 2.96
COL9A3-203ENST00000462700 DNAJC5Q9H3Z4 198 aa33.41■■■□□ 2.94
COL9A3-203ENST00000462700 IFT140Q96RY7 1462 aa33.41■■■□□ 2.94
COL9A3-203ENST00000462700 POLA1P09884 1462 aaPredicted RBP33.31■■■□□ 2.92
COL9A3-203ENST00000462700 CUX1P39880 1505 aa33.3■■■□□ 2.92
COL9A3-203ENST00000462700 ZNF608Q9ULD9 1512 aaPredicted RBP33.27■■■□□ 2.92
COL9A3-203ENST00000462700 TARBP1Q13395 1621 aaKnown RBP33.23■■■□□ 2.91
COL9A3-203ENST00000462700 FGD5Q6ZNL6 1462 aa33.2■■■□□ 2.91
COL9A3-203ENST00000462700 SOGA1O94964 1423 aa33.15■■■□□ 2.9
COL9A3-203ENST00000462700 RAD54L2Q9Y4B4 1467 aa33.15■■■□□ 2.9
COL9A3-203ENST00000462700 EIF4G3O43432 1585 aaKnown RBP33.13■■■□□ 2.89
COL9A3-203ENST00000462700 AQRO60306 1485 aaKnown RBP eCLIP33.06■■■□□ 2.886e-6■■■■□ 23.2
COL9A3-203ENST00000462700 WRNQ14191 1432 aaPredicted RBP eCLIP33.03■■■□□ 2.88
COL9A3-203ENST00000462700 TDRD9Q8NDG6 1382 aaKnown RBP32.97■■■□□ 2.87
COL9A3-203ENST00000462700 TOP2BQ02880 1626 aa32.97■■■□□ 2.87
COL9A3-203ENST00000462700 SYNJ1O43426 1573 aa32.96■■■□□ 2.87
COL9A3-203ENST00000462700 WDR97A6NE52 1622 aa32.96■■■□□ 2.87
COL9A3-203ENST00000462700 BIVM-ERCC5R4GMW8 1640 aa32.96■■■□□ 2.87
COL9A3-203ENST00000462700 OSCARQ8IYS5 282 aa32.88■■■□□ 2.85
COL9A3-203ENST00000462700 ABCA10Q8WWZ4 1543 aa32.87■■■□□ 2.85
COL9A3-203ENST00000462700 GRIN2BQ13224 1484 aa32.79■■■□□ 2.84
COL9A3-203ENST00000462700 GAPVD1Q14C86 1478 aa32.77■■■□□ 2.84
COL9A3-203ENST00000462700 SNAPC4Q5SXM2 1469 aa32.77■■■□□ 2.84
COL9A3-203ENST00000462700 ABCA5Q8WWZ7 1642 aa32.75■■■□□ 2.83
COL9A3-203ENST00000462700 MAGI1Q96QZ7 1491 aaPredicted RBP32.71■■■□□ 2.83
COL9A3-203ENST00000462700 CHD1O14646 1710 aa32.7■■■□□ 2.83
COL9A3-203ENST00000462700 PBRM1Q86U86 1689 aa32.69■■■□□ 2.82
COL9A3-203ENST00000462700 FBLN2P98095 1184 aa32.66■■■□□ 2.82
COL9A3-203ENST00000462700 SYNJ2O15056 1496 aa32.59■■■□□ 2.81
COL9A3-203ENST00000462700 CHMP7Q8WUX9 453 aaPredicted RBP32.56■■■□□ 2.8
COL9A3-203ENST00000462700 ERICH3Q5RHP9 1530 aa32.47■■■□□ 2.79
COL9A3-203ENST00000462700 ADAMTS12P58397 1594 aa32.45■■■□□ 2.79
COL9A3-203ENST00000462700 FHAD1B1AJZ9 1412 aa32.39■■■□□ 2.78
COL9A3-203ENST00000462700 CLASP1Q7Z460 1538 aa32.39■■■□□ 2.78
COL9A3-203ENST00000462700 RIMBP3CA6NJZ7 1639 aa32.38■■■□□ 2.77
COL9A3-203ENST00000462700 RIMBP3BA6NNM3 1639 aa32.38■■■□□ 2.77
COL9A3-203ENST00000462700 RIMBP3Q9UFD9 1639 aa32.38■■■□□ 2.77
COL9A3-203ENST00000462700 ARHGEF11O15085 1522 aa32.37■■■□□ 2.77
COL9A3-203ENST00000462700 GRIN2AQ12879 1464 aa32.36■■■□□ 2.77
COL9A3-203ENST00000462700 KIF27Q86VH2 1401 aa32.35■■■□□ 2.77
COL9A3-203ENST00000462700 TRIM41Q8WV44 630 aa32.27■■■□□ 2.76
COL9A3-203ENST00000462700 NUP160Q12769 1436 aa32.24■■■□□ 2.75
COL9A3-203ENST00000462700 IGF1RP08069 1367 aa32.23■■■□□ 2.75
COL9A3-203ENST00000462700 CEP170Q5SW79 1584 aa32.21■■■□□ 2.75
COL9A3-203ENST00000462700 CUL7Q14999 1698 aa32.15■■■□□ 2.74
COL9A3-203ENST00000462700 ARAP1Q96P48 1450 aa32.11■■■□□ 2.73
COL9A3-203ENST00000462700 CYB5RLQ6IPT4 315 aa32.06■■■□□ 2.72
COL9A3-203ENST00000462700 CARMIL1Q5VZK9 1371 aa32.04■■■□□ 2.72
COL9A3-203ENST00000462700 RUSC2Q8N2Y8 1516 aa32.02■■■□□ 2.72
COL9A3-203ENST00000462700 SHROOM2Q13796 1616 aa31.99■■■□□ 2.71
COL9A3-203ENST00000462700 ERCC6L2Q5T890 1561 aa31.93■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms