RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 NISCHQ9Y2I1 1504 aa40.6■■■■■ 4.09
COL9A3-205ENST00000466192 CCDC180Q9P1Z9 1646 aa35.21■■■■□ 3.23
COL9A3-205ENST00000466192 ZCCHC6Q5VYS8 1495 aaKnown RBP34.17■■■■□ 3.06
COL9A3-205ENST00000466192 DCAF8L2P0C7V8 631 aa33.51■■■□□ 2.95
COL9A3-205ENST00000466192 DCAF1Q9Y4B6 1507 aa33.49■■■□□ 2.95
COL9A3-205ENST00000466192 SHROOM4Q9ULL8 1493 aa33.48■■■□□ 2.95
COL9A3-205ENST00000466192 ABCC9O60706 1549 aa33.08■■■□□ 2.89
COL9A3-205ENST00000466192 MYO15BQ96JP2 1530 aa32.95■■■□□ 2.86
COL9A3-205ENST00000466192 NACADO15069 1562 aa32.7■■■□□ 2.82
COL9A3-205ENST00000466192 SCRIBQ14160 1630 aa32.53■■■□□ 2.8
COL9A3-205ENST00000466192 SUPT5HO00267 1087 aaKnown RBP32.36■■■□□ 2.77
COL9A3-205ENST00000466192 RB1CC1Q8TDY2 1594 aa32.35■■■□□ 2.77
COL9A3-205ENST00000466192 UNC13AQ9UPW8 1703 aa31.88■■■□□ 2.69
COL9A3-205ENST00000466192 RSF1Q96T23 1441 aaPredicted RBP31.65■■■□□ 2.66
COL9A3-205ENST00000466192 CECR2Q9BXF3 1484 aa31.59■■■□□ 2.65
COL9A3-205ENST00000466192 BICRAQ9NZM4 1560 aa31.45■■■□□ 2.63
COL9A3-205ENST00000466192 MROH2BQ7Z745 1585 aa31.43■■■□□ 2.62
COL9A3-205ENST00000466192 PABPN1Q86U42 306 aaKnown RBP eCLIP31.3■■■□□ 2.68e-12■■■□□ 14.8
COL9A3-205ENST00000466192 BAZ1AQ9NRL2 1556 aaPredicted RBP31.3■■■□□ 2.6
COL9A3-205ENST00000466192 WIZO95785 1651 aa31.24■■■□□ 2.59
COL9A3-205ENST00000466192 SMARCA4P51532 1647 aa31.16■■■□□ 2.58
COL9A3-205ENST00000466192 CHIC1Q5VXU3 224 aa31.13■■■□□ 2.57
COL9A3-205ENST00000466192 TOP2AP11388 1531 aaKnown RBP30.82■■■□□ 2.52
COL9A3-205ENST00000466192 PEG3Q9GZU2 1588 aa30.72■■■□□ 2.51
COL9A3-205ENST00000466192 SMARCA2P51531 1590 aa30.59■■■□□ 2.49
COL9A3-205ENST00000466192 CCDC88BA6NC98 1476 aa30.56■■■□□ 2.48
COL9A3-205ENST00000466192 ATAD2BQ9ULI0 1458 aa30.54■■■□□ 2.48
COL9A3-205ENST00000466192 EIF4G1Q04637 1599 aaKnown RBP30.49■■■□□ 2.47
COL9A3-205ENST00000466192 BAZ1BQ9UIG0 1483 aaKnown RBP30.38■■■□□ 2.45
COL9A3-205ENST00000466192 TRIM41Q8WV44 630 aa30.34■■■□□ 2.45
COL9A3-205ENST00000466192 NCAPD3P42695 1498 aa30.19■■■□□ 2.42
COL9A3-205ENST00000466192 HMGXB3Q12766 1538 aa30.17■■■□□ 2.42
COL9A3-205ENST00000466192 ABCC8Q09428 1581 aa30.09■■■□□ 2.41
COL9A3-205ENST00000466192 LOC105371045A0A1W2PR82 267 aa30.02■■■□□ 2.4
COL9A3-205ENST00000466192 CC2D2AQ9P2K1 1620 aa29.94■■■□□ 2.38
COL9A3-205ENST00000466192 FAM9AQ8IZU1 332 aaPredicted RBP29.88■■■□□ 2.37
COL9A3-205ENST00000466192 WRNQ14191 1432 aaPredicted RBP eCLIP29.76■■■□□ 2.35
COL9A3-205ENST00000466192 SYNJ1O43426 1573 aa29.69■■■□□ 2.34
COL9A3-205ENST00000466192 CFTRP13569 1480 aa29.63■■■□□ 2.33
COL9A3-205ENST00000466192 SOGA1O94964 1423 aa29.57■■■□□ 2.32
COL9A3-205ENST00000466192 PRDM2Q13029 1718 aa29.56■■■□□ 2.32
COL9A3-205ENST00000466192 EHMT2Q96KQ7 1210 aa29.51■■■□□ 2.31
COL9A3-205ENST00000466192 TOP2BQ02880 1626 aa29.49■■■□□ 2.31
COL9A3-205ENST00000466192 RUSC2Q8N2Y8 1516 aa29.47■■■□□ 2.31
COL9A3-205ENST00000466192 BIVM-ERCC5R4GMW8 1640 aa29.46■■■□□ 2.31
COL9A3-205ENST00000466192 CADPSQ9ULU8 1353 aa29.45■■■□□ 2.31
COL9A3-205ENST00000466192 EEA1Q15075 1411 aa29.44■■■□□ 2.3
COL9A3-205ENST00000466192 CUX1P39880 1505 aa29.36■■■□□ 2.29
COL9A3-205ENST00000466192 CSRNP3Q8WYN3 585 aa29.32■■■□□ 2.28
COL9A3-205ENST00000466192 NESP48681 1621 aa29.18■■■□□ 2.26
COL9A3-205ENST00000466192 DNAJC5BQ9UF47 199 aa29.18■■■□□ 2.26
COL9A3-205ENST00000466192 FANCD2Q9BXW9 1451 aa29.15■■■□□ 2.26
COL9A3-205ENST00000466192 PCGF6Q9BYE7 350 aa29.14■■■□□ 2.26
COL9A3-205ENST00000466192 KIF21BO75037 1637 aa29.11■■■□□ 2.25
COL9A3-205ENST00000466192 LAMC3Q9Y6N6 1575 aa29.11■■■□□ 2.25
COL9A3-205ENST00000466192 GOLGA3Q08378 1498 aa29.11■■■□□ 2.25
COL9A3-205ENST00000466192 TNIKQ9UKE5 1360 aa29.08■■■□□ 2.25
COL9A3-205ENST00000466192 CEP164Q9UPV0 1460 aa29.07■■■□□ 2.24
COL9A3-205ENST00000466192 UBTFP17480 764 aaKnown RBP29.01■■■□□ 2.23
COL9A3-205ENST00000466192 CEP162Q5TB80 1403 aa28.99■■■□□ 2.23
COL9A3-205ENST00000466192 FGD5Q6ZNL6 1462 aa28.97■■■□□ 2.23
COL9A3-205ENST00000466192 KIF27Q86VH2 1401 aa28.95■■■□□ 2.23
COL9A3-205ENST00000466192 DNMBPQ6XZF7 1577 aa28.94■■■□□ 2.22
COL9A3-205ENST00000466192 RAPGEF2Q9Y4G8 1499 aa28.93■■■□□ 2.22
COL9A3-205ENST00000466192 TOPBP1Q92547 1522 aa28.89■■■□□ 2.21
COL9A3-205ENST00000466192 PRXQ9BXM0 1461 aa28.87■■■□□ 2.21
COL9A3-205ENST00000466192 PDS5BQ9NTI5 1447 aa28.85■■■□□ 2.21
COL9A3-205ENST00000466192 TRIM26Q12899 539 aaPredicted RBP28.85■■■□□ 2.21
COL9A3-205ENST00000466192 KIF21AQ7Z4S6 1674 aa28.84■■■□□ 2.21
COL9A3-205ENST00000466192 CUX2O14529 1486 aa28.84■■■□□ 2.21
COL9A3-205ENST00000466192 ERICH3Q5RHP9 1530 aa28.83■■■□□ 2.21
COL9A3-205ENST00000466192 URB2Q14146 1524 aaKnown RBP28.8■■■□□ 2.2
COL9A3-205ENST00000466192 POLA1P09884 1462 aaPredicted RBP28.78■■■□□ 2.2
COL9A3-205ENST00000466192 RAD54L2Q9Y4B4 1467 aa28.73■■■□□ 2.19
COL9A3-205ENST00000466192 IGF1RP08069 1367 aa28.7■■■□□ 2.18
COL9A3-205ENST00000466192 ABCA10Q8WWZ4 1543 aa28.69■■■□□ 2.18
COL9A3-205ENST00000466192 CLIP1P30622 1438 aa28.67■■■□□ 2.18
COL9A3-205ENST00000466192 HRCP23327 699 aa28.64■■■□□ 2.18
COL9A3-205ENST00000466192 PPARGC1BQ86YN6 1023 aaKnown RBP28.62■■■□□ 2.17
COL9A3-205ENST00000466192 WDR97A6NE52 1622 aa28.62■■■□□ 2.17
COL9A3-205ENST00000466192 CARMIL1Q5VZK9 1371 aa28.54■■■□□ 2.16
COL9A3-205ENST00000466192 RANGAP1P46060 587 aaPredicted RBP28.52■■■□□ 2.16
COL9A3-205ENST00000466192 MRC2Q9UBG0 1479 aa28.49■■■□□ 2.15
COL9A3-205ENST00000466192 VPS8Q8N3P4 1428 aa28.46■■■□□ 2.15
COL9A3-205ENST00000466192 ABCA5Q8WWZ7 1642 aa28.46■■■□□ 2.15
COL9A3-205ENST00000466192 TARBP1Q13395 1621 aaKnown RBP28.45■■■□□ 2.14
COL9A3-205ENST00000466192 CUL7Q14999 1698 aa28.42■■■□□ 2.14
COL9A3-205ENST00000466192 TDRD9Q8NDG6 1382 aaKnown RBP28.4■■■□□ 2.14
COL9A3-205ENST00000466192 ARAP1Q96P48 1450 aa28.38■■■□□ 2.13
COL9A3-205ENST00000466192 GAPVD1Q14C86 1478 aa28.36■■■□□ 2.13
COL9A3-205ENST00000466192 WDR62O43379 1518 aa28.34■■■□□ 2.13
COL9A3-205ENST00000466192 TTBK1Q5TCY1 1321 aaPredicted RBP28.32■■■□□ 2.12
COL9A3-205ENST00000466192 ARHGAP35Q9NRY4 1499 aa28.31■■■□□ 2.12
COL9A3-205ENST00000466192 ERCC6Q03468 1493 aa28.28■■■□□ 2.12
COL9A3-205ENST00000466192 PBRM1Q86U86 1689 aa28.23■■■□□ 2.11
COL9A3-205ENST00000466192 CTTNBP2Q8WZ74 1663 aa28.22■■■□□ 2.11
COL9A3-205ENST00000466192 THOC2Q8NI27 1593 aaKnown RBP28.22■■■□□ 2.11
COL9A3-205ENST00000466192 IFT140Q96RY7 1462 aa28.18■■■□□ 2.1
COL9A3-205ENST00000466192 AQRO60306 1485 aaKnown RBP eCLIP28.17■■■□□ 2.16e-6■■■■□ 23.2
COL9A3-205ENST00000466192 APLP2Q06481 763 aa28.16■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms