RNA–Protein interactions for RNA: ENST00000582114.5

CDK5RAP3-223, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 2

Gene CDK5RAP3, Length 647 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-223ENST00000582114 NISCHQ9Y2I1 1504 aa29.07■■■□□ 2.24
CDK5RAP3-223ENST00000582114 ABCC9O60706 1549 aa26.13■■□□□ 1.77
CDK5RAP3-223ENST00000582114 CCDC180Q9P1Z9 1646 aa26.03■■□□□ 1.76
CDK5RAP3-223ENST00000582114 RB1CC1Q8TDY2 1594 aa24.8■■□□□ 1.56
CDK5RAP3-223ENST00000582114 DCAF8L2P0C7V8 631 aa24.66■■□□□ 1.54
CDK5RAP3-223ENST00000582114 NACADO15069 1562 aa24.62■■□□□ 1.53
CDK5RAP3-223ENST00000582114 DNAJC5BQ9UF47 199 aa24.48■■□□□ 1.51
CDK5RAP3-223ENST00000582114 PABPN1Q86U42 306 aaKnown RBP eCLIP24.36■■□□□ 1.495e-11■■□□□ 13.3
CDK5RAP3-223ENST00000582114 UNC13AQ9UPW8 1703 aa24.27■■□□□ 1.48
CDK5RAP3-223ENST00000582114 MYO15BQ96JP2 1530 aa24.22■■□□□ 1.47
CDK5RAP3-223ENST00000582114 ZCCHC6Q5VYS8 1495 aaKnown RBP24.1■■□□□ 1.45
CDK5RAP3-223ENST00000582114 BICRAQ9NZM4 1560 aa24.1■■□□□ 1.45
CDK5RAP3-223ENST00000582114 DCAF1Q9Y4B6 1507 aa23.94■■□□□ 1.42
CDK5RAP3-223ENST00000582114 SCRIBQ14160 1630 aa23.84■■□□□ 1.41
CDK5RAP3-223ENST00000582114 SHROOM4Q9ULL8 1493 aa23.67■■□□□ 1.38
CDK5RAP3-223ENST00000582114 CC2D2AQ9P2K1 1620 aa23.56■■□□□ 1.36
CDK5RAP3-223ENST00000582114 EIF4G1Q04637 1599 aaKnown RBP23.51■■□□□ 1.35
CDK5RAP3-223ENST00000582114 CECR2Q9BXF3 1484 aa23.49■■□□□ 1.35
CDK5RAP3-223ENST00000582114 NCAPD3P42695 1498 aa22.72■■□□□ 1.23
CDK5RAP3-223ENST00000582114 ATAD2BQ9ULI0 1458 aa22.7■■□□□ 1.22
CDK5RAP3-223ENST00000582114 SMARCA4P51532 1647 aa22.69■■□□□ 1.22
CDK5RAP3-223ENST00000582114 SMARCA2P51531 1590 aa22.61■■□□□ 1.21
CDK5RAP3-223ENST00000582114 HMGXB3Q12766 1538 aa22.56■■□□□ 1.2
CDK5RAP3-223ENST00000582114 BAZ1AQ9NRL2 1556 aaPredicted RBP22.55■■□□□ 1.2
CDK5RAP3-223ENST00000582114 ERCC6Q03468 1493 aa22.54■■□□□ 1.2
CDK5RAP3-223ENST00000582114 BAZ1BQ9UIG0 1483 aaKnown RBP22.5■■□□□ 1.19
CDK5RAP3-223ENST00000582114 NESP48681 1621 aa22.46■■□□□ 1.19
CDK5RAP3-223ENST00000582114 MROH2BQ7Z745 1585 aa22.44■■□□□ 1.18
CDK5RAP3-223ENST00000582114 CUX2O14529 1486 aa22.42■■□□□ 1.18
CDK5RAP3-223ENST00000582114 PEG3Q9GZU2 1588 aa22.41■■□□□ 1.18
CDK5RAP3-223ENST00000582114 DNAJC5Q9H3Z4 198 aa22.4■■□□□ 1.18
CDK5RAP3-223ENST00000582114 LAMC3Q9Y6N6 1575 aa22.21■■□□□ 1.15
CDK5RAP3-223ENST00000582114 WIZO95785 1651 aa22.2■■□□□ 1.14
CDK5RAP3-223ENST00000582114 THOC2Q8NI27 1593 aaKnown RBP22.17■■□□□ 1.14
CDK5RAP3-223ENST00000582114 KIF21AQ7Z4S6 1674 aa22.14■■□□□ 1.14
CDK5RAP3-223ENST00000582114 PDS5BQ9NTI5 1447 aa22.1■■□□□ 1.13
CDK5RAP3-223ENST00000582114 CADPSQ9ULU8 1353 aa22.06■■□□□ 1.12
CDK5RAP3-223ENST00000582114 RSF1Q96T23 1441 aaPredicted RBP21.97■■□□□ 1.11
CDK5RAP3-223ENST00000582114 MRC2Q9UBG0 1479 aa21.93■■□□□ 1.1
CDK5RAP3-223ENST00000582114 TOP2AP11388 1531 aaKnown RBP21.86■■□□□ 1.09
CDK5RAP3-223ENST00000582114 CEP164Q9UPV0 1460 aa21.86■■□□□ 1.09
CDK5RAP3-223ENST00000582114 WDR62O43379 1518 aa21.85■■□□□ 1.09
CDK5RAP3-223ENST00000582114 FANCD2Q9BXW9 1451 aa21.84■■□□□ 1.09
CDK5RAP3-223ENST00000582114 CFTRP13569 1480 aa21.81■■□□□ 1.08
CDK5RAP3-223ENST00000582114 URB2Q14146 1524 aaKnown RBP21.66■■□□□ 1.06
CDK5RAP3-223ENST00000582114 CCDC88BA6NC98 1476 aa21.64■■□□□ 1.06
CDK5RAP3-223ENST00000582114 PRDM2Q13029 1718 aa21.59■■□□□ 1.05
CDK5RAP3-223ENST00000582114 TRIM41Q8WV44 630 aa21.54■■□□□ 1.04
CDK5RAP3-223ENST00000582114 OSCARQ8IYS5 282 aa21.43■■□□□ 1.02
CDK5RAP3-223ENST00000582114 TOPBP1Q92547 1522 aa21.42■■□□□ 1.02
CDK5RAP3-223ENST00000582114 ZNF608Q9ULD9 1512 aaPredicted RBP21.42■■□□□ 1.02
CDK5RAP3-223ENST00000582114 IFT140Q96RY7 1462 aa21.39■■□□□ 1.02
CDK5RAP3-223ENST00000582114 DNMBPQ6XZF7 1577 aa21.34■■□□□ 1.01
CDK5RAP3-223ENST00000582114 ABCC8Q09428 1581 aa21.31■■□□□ 1
CDK5RAP3-223ENST00000582114 EIF4G3O43432 1585 aaKnown RBP21.27■■□□□ 1
CDK5RAP3-223ENST00000582114 AQRO60306 1485 aaKnown RBP eCLIP21.22■□□□□ 0.999e-9■■■■□ 25
CDK5RAP3-223ENST00000582114 TARBP1Q13395 1621 aaKnown RBP21.22■□□□□ 0.99
CDK5RAP3-223ENST00000582114 POLA1P09884 1462 aaPredicted RBP21.2■□□□□ 0.98
CDK5RAP3-223ENST00000582114 RIMBP3CA6NJZ7 1639 aa21.18■□□□□ 0.98
CDK5RAP3-223ENST00000582114 RIMBP3BA6NNM3 1639 aa21.18■□□□□ 0.98
CDK5RAP3-223ENST00000582114 RIMBP3Q9UFD9 1639 aa21.18■□□□□ 0.98
CDK5RAP3-223ENST00000582114 RAD54L2Q9Y4B4 1467 aa21.17■□□□□ 0.98
CDK5RAP3-223ENST00000582114 CHD1O14646 1710 aa21.12■□□□□ 0.97
CDK5RAP3-223ENST00000582114 SUPT5HO00267 1087 aaKnown RBP21.12■□□□□ 0.97
CDK5RAP3-223ENST00000582114 FBLN2P98095 1184 aa21.12■□□□□ 0.97
CDK5RAP3-223ENST00000582114 SOGA1O94964 1423 aa21.12■□□□□ 0.97
CDK5RAP3-223ENST00000582114 TDRD9Q8NDG6 1382 aaKnown RBP21.1■□□□□ 0.97
CDK5RAP3-223ENST00000582114 ARHGEF11O15085 1522 aa21.1■□□□□ 0.97
CDK5RAP3-223ENST00000582114 FGD5Q6ZNL6 1462 aa21.09■□□□□ 0.97
CDK5RAP3-223ENST00000582114 CUX1P39880 1505 aa21.09■□□□□ 0.97
CDK5RAP3-223ENST00000582114 SNAPC4Q5SXM2 1469 aa21.01■□□□□ 0.95
CDK5RAP3-223ENST00000582114 CYB5RLQ6IPT4 315 aa20.99■□□□□ 0.95
CDK5RAP3-223ENST00000582114 WDR97A6NE52 1622 aa20.93■□□□□ 0.94
CDK5RAP3-223ENST00000582114 CHMP7Q8WUX9 453 aaPredicted RBP20.92■□□□□ 0.94
CDK5RAP3-223ENST00000582114 GRIN2BQ13224 1484 aa20.91■□□□□ 0.94
CDK5RAP3-223ENST00000582114 ARAP1Q96P48 1450 aa20.91■□□□□ 0.94
CDK5RAP3-223ENST00000582114 MAGI1Q96QZ7 1491 aaPredicted RBP20.89■□□□□ 0.94
CDK5RAP3-223ENST00000582114 PBRM1Q86U86 1689 aa20.86■□□□□ 0.93
CDK5RAP3-223ENST00000582114 GAPVD1Q14C86 1478 aa20.86■□□□□ 0.93
CDK5RAP3-223ENST00000582114 CLASP1Q7Z460 1538 aa20.84■□□□□ 0.93
CDK5RAP3-223ENST00000582114 SYNJ2O15056 1496 aa20.84■□□□□ 0.93
CDK5RAP3-223ENST00000582114 SYNJ1O43426 1573 aa20.84■□□□□ 0.93
CDK5RAP3-223ENST00000582114 ABCA10Q8WWZ4 1543 aa20.82■□□□□ 0.92
CDK5RAP3-223ENST00000582114 ABCA5Q8WWZ7 1642 aa20.8■□□□□ 0.92
CDK5RAP3-223ENST00000582114 TRHP20396 242 aaPredicted RBP20.77■□□□□ 0.92
CDK5RAP3-223ENST00000582114 WRNQ14191 1432 aaPredicted RBP eCLIP20.75■□□□□ 0.91
CDK5RAP3-223ENST00000582114 TOP2BQ02880 1626 aa20.72■□□□□ 0.91
CDK5RAP3-223ENST00000582114 BIVM-ERCC5R4GMW8 1640 aa20.72■□□□□ 0.91
CDK5RAP3-223ENST00000582114 ADAMTS12P58397 1594 aa20.65■□□□□ 0.9
CDK5RAP3-223ENST00000582114 GRIN2AQ12879 1464 aa20.65■□□□□ 0.9
CDK5RAP3-223ENST00000582114 CEP170Q5SW79 1584 aa20.59■□□□□ 0.89
CDK5RAP3-223ENST00000582114 ERCC6L2Q5T890 1561 aa20.59■□□□□ 0.89
CDK5RAP3-223ENST00000582114 FHAD1B1AJZ9 1412 aa20.58■□□□□ 0.88
CDK5RAP3-223ENST00000582114 NUP160Q12769 1436 aa20.56■□□□□ 0.88
CDK5RAP3-223ENST00000582114 ERICH3Q5RHP9 1530 aa20.55■□□□□ 0.88
CDK5RAP3-223ENST00000582114 SHROOM2Q13796 1616 aa20.45■□□□□ 0.87
CDK5RAP3-223ENST00000582114 PRG4Q92954 1404 aaPredicted RBP20.4■□□□□ 0.86
CDK5RAP3-223ENST00000582114 JPH4Q96JJ6 628 aa20.38■□□□□ 0.85
CDK5RAP3-223ENST00000582114 RUSC2Q8N2Y8 1516 aa20.36■□□□□ 0.85
CDK5RAP3-223ENST00000582114 KIF27Q86VH2 1401 aa20.33■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms