RNA–Protein interactions for RNA: ENST00000606752.1

USP6NL-204, Transcript of USP6 N-terminal like, humanhuman

TSL 1 (best)

Gene USP6NL, Length 1,823 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP6NL-204ENST00000606752 NISCHQ9Y2I1 1504 aa48.91■■■■■ 5.42
USP6NL-204ENST00000606752 CCDC180Q9P1Z9 1646 aa42.59■■■■■ 4.41
USP6NL-204ENST00000606752 ZCCHC6Q5VYS8 1495 aaKnown RBP41.06■■■■■ 4.16
USP6NL-204ENST00000606752 DCAF8L2P0C7V8 631 aa40.49■■■■■ 4.07
USP6NL-204ENST00000606752 DCAF1Q9Y4B6 1507 aa40.45■■■■■ 4.07
USP6NL-204ENST00000606752 ABCC9O60706 1549 aa40.38■■■■■ 4.05
USP6NL-204ENST00000606752 MYO15BQ96JP2 1530 aa40■■■■□ 3.99
USP6NL-204ENST00000606752 SHROOM4Q9ULL8 1493 aa39.88■■■■□ 3.97
USP6NL-204ENST00000606752 NACADO15069 1562 aa39.75■■■■□ 3.95
USP6NL-204ENST00000606752 RB1CC1Q8TDY2 1594 aa39.4■■■■□ 3.9
USP6NL-204ENST00000606752 SCRIBQ14160 1630 aa39.17■■■■□ 3.86
USP6NL-204ENST00000606752 UNC13AQ9UPW8 1703 aa38.49■■■■□ 3.75
USP6NL-204ENST00000606752 SUPT5HO00267 1087 aaKnown RBP38.4■■■■□ 3.74
USP6NL-204ENST00000606752 BICRAQ9NZM4 1560 aa38.19■■■■□ 3.7
USP6NL-204ENST00000606752 PABPN1Q86U42 306 aaKnown RBP eCLIP38.13■■■■□ 3.69
USP6NL-204ENST00000606752 CECR2Q9BXF3 1484 aa38.01■■■■□ 3.68
USP6NL-204ENST00000606752 RSF1Q96T23 1441 aaPredicted RBP37.96■■■■□ 3.67
USP6NL-204ENST00000606752 MROH2BQ7Z745 1585 aa37.77■■■■□ 3.64
USP6NL-204ENST00000606752 BAZ1AQ9NRL2 1556 aaPredicted RBP37.76■■■■□ 3.63
USP6NL-204ENST00000606752 SMARCA4P51532 1647 aa37.56■■■■□ 3.6
USP6NL-204ENST00000606752 WIZO95785 1651 aa37.42■■■■□ 3.58
USP6NL-204ENST00000606752 PEG3Q9GZU2 1588 aa37.13■■■■□ 3.53
USP6NL-204ENST00000606752 TOP2AP11388 1531 aaKnown RBP37.06■■■■□ 3.52
USP6NL-204ENST00000606752 EIF4G1Q04637 1599 aaKnown RBP37.06■■■■□ 3.52
USP6NL-204ENST00000606752 ATAD2BQ9ULI0 1458 aa37.02■■■■□ 3.52
USP6NL-204ENST00000606752 SMARCA2P51531 1590 aa36.97■■■■□ 3.51
USP6NL-204ENST00000606752 BAZ1BQ9UIG0 1483 aaKnown RBP36.79■■■■□ 3.48
USP6NL-204ENST00000606752 CHIC1Q5VXU3 224 aa36.75■■■■□ 3.47
USP6NL-204ENST00000606752 NCAPD3P42695 1498 aa36.73■■■■□ 3.47
USP6NL-204ENST00000606752 CCDC88BA6NC98 1476 aa36.72■■■■□ 3.47
USP6NL-204ENST00000606752 HMGXB3Q12766 1538 aa36.61■■■■□ 3.45
USP6NL-204ENST00000606752 CC2D2AQ9P2K1 1620 aa36.51■■■■□ 3.43
USP6NL-204ENST00000606752 TRIM41Q8WV44 630 aa36.13■■■■□ 3.37
USP6NL-204ENST00000606752 CFTRP13569 1480 aa35.89■■■■□ 3.34
USP6NL-204ENST00000606752 ABCC8Q09428 1581 aa35.88■■■■□ 3.33
USP6NL-204ENST00000606752 CADPSQ9ULU8 1353 aa35.8■■■■□ 3.32
USP6NL-204ENST00000606752 WRNQ14191 1432 aaPredicted RBP eCLIP35.72■■■■□ 3.31
USP6NL-204ENST00000606752 DNAJC5BQ9UF47 199 aa35.7■■■■□ 3.31
USP6NL-204ENST00000606752 PRDM2Q13029 1718 aa35.54■■■■□ 3.28
USP6NL-204ENST00000606752 SYNJ1O43426 1573 aa35.51■■■■□ 3.27
USP6NL-204ENST00000606752 FAM9AQ8IZU1 332 aaPredicted RBP35.44■■■■□ 3.26
USP6NL-204ENST00000606752 NESP48681 1621 aa35.43■■■■□ 3.26
USP6NL-204ENST00000606752 LAMC3Q9Y6N6 1575 aa35.43■■■■□ 3.26
USP6NL-204ENST00000606752 TOP2BQ02880 1626 aa35.39■■■■□ 3.26
USP6NL-204ENST00000606752 FANCD2Q9BXW9 1451 aa35.36■■■■□ 3.25
USP6NL-204ENST00000606752 LOC105371045A0A1W2PR82 267 aa35.34■■■■□ 3.25
USP6NL-204ENST00000606752 CUX1P39880 1505 aa35.32■■■■□ 3.24
USP6NL-204ENST00000606752 BIVM-ERCC5R4GMW8 1640 aa35.32■■■■□ 3.24
USP6NL-204ENST00000606752 SOGA1O94964 1423 aa35.26■■■■□ 3.24
USP6NL-204ENST00000606752 PDS5BQ9NTI5 1447 aa35.22■■■■□ 3.23
USP6NL-204ENST00000606752 EEA1Q15075 1411 aa35.21■■■■□ 3.23
USP6NL-204ENST00000606752 CEP164Q9UPV0 1460 aa35.13■■■■□ 3.21
USP6NL-204ENST00000606752 RUSC2Q8N2Y8 1516 aa35.11■■■■□ 3.21
USP6NL-204ENST00000606752 CSRNP3Q8WYN3 585 aa35.06■■■■□ 3.2
USP6NL-204ENST00000606752 DNMBPQ6XZF7 1577 aa35■■■■□ 3.19
USP6NL-204ENST00000606752 TOPBP1Q92547 1522 aa34.96■■■■□ 3.19
USP6NL-204ENST00000606752 FGD5Q6ZNL6 1462 aa34.94■■■■□ 3.18
USP6NL-204ENST00000606752 KIF21AQ7Z4S6 1674 aa34.92■■■■□ 3.18
USP6NL-204ENST00000606752 EHMT2Q96KQ7 1210 aa34.92■■■■□ 3.18
USP6NL-204ENST00000606752 URB2Q14146 1524 aaKnown RBP34.9■■■■□ 3.18
USP6NL-204ENST00000606752 KIF27Q86VH2 1401 aa34.84■■■■□ 3.17
USP6NL-204ENST00000606752 POLA1P09884 1462 aaPredicted RBP34.79■■■■□ 3.16
USP6NL-204ENST00000606752 CUX2O14529 1486 aa34.74■■■■□ 3.15
USP6NL-204ENST00000606752 MRC2Q9UBG0 1479 aa34.72■■■■□ 3.15
USP6NL-204ENST00000606752 GOLGA3Q08378 1498 aa34.69■■■■□ 3.14
USP6NL-204ENST00000606752 RAD54L2Q9Y4B4 1467 aa34.68■■■■□ 3.14
USP6NL-204ENST00000606752 KIF21BO75037 1637 aa34.68■■■■□ 3.14
USP6NL-204ENST00000606752 ABCA10Q8WWZ4 1543 aa34.65■■■■□ 3.14
USP6NL-204ENST00000606752 ERCC6Q03468 1493 aa34.64■■■■□ 3.14
USP6NL-204ENST00000606752 TNIKQ9UKE5 1360 aa34.62■■■■□ 3.13
USP6NL-204ENST00000606752 UBTFP17480 764 aaKnown RBP34.6■■■■□ 3.13
USP6NL-204ENST00000606752 PRXQ9BXM0 1461 aa34.59■■■■□ 3.13
USP6NL-204ENST00000606752 IGF1RP08069 1367 aa34.57■■■■□ 3.12
USP6NL-204ENST00000606752 RAPGEF2Q9Y4G8 1499 aa34.53■■■■□ 3.12
USP6NL-204ENST00000606752 WDR62O43379 1518 aa34.52■■■■□ 3.12
USP6NL-204ENST00000606752 ERICH3Q5RHP9 1530 aa34.48■■■■□ 3.11
USP6NL-204ENST00000606752 WDR97A6NE52 1622 aa34.44■■■■□ 3.1
USP6NL-204ENST00000606752 TARBP1Q13395 1621 aaKnown RBP34.41■■■■□ 3.1
USP6NL-204ENST00000606752 TDRD9Q8NDG6 1382 aaKnown RBP34.39■■■■□ 3.1
USP6NL-204ENST00000606752 CEP162Q5TB80 1403 aa34.39■■■■□ 3.1
USP6NL-204ENST00000606752 THOC2Q8NI27 1593 aaKnown RBP34.38■■■■□ 3.09
USP6NL-204ENST00000606752 CARMIL1Q5VZK9 1371 aa34.38■■■■□ 3.09
USP6NL-204ENST00000606752 GAPVD1Q14C86 1478 aa34.32■■■■□ 3.08
USP6NL-204ENST00000606752 ABCA5Q8WWZ7 1642 aa34.31■■■■□ 3.08
USP6NL-204ENST00000606752 IFT140Q96RY7 1462 aa34.31■■■■□ 3.08
USP6NL-204ENST00000606752 CUL7Q14999 1698 aa34.19■■■■□ 3.06
USP6NL-204ENST00000606752 AQRO60306 1485 aaKnown RBP eCLIP34.16■■■■□ 3.062e-8■■■■■ 33.4
USP6NL-204ENST00000606752 CLIP1P30622 1438 aa34.15■■■■□ 3.06
USP6NL-204ENST00000606752 ZNF608Q9ULD9 1512 aaPredicted RBP34.11■■■■□ 3.05
USP6NL-204ENST00000606752 GRIN2BQ13224 1484 aa34.06■■■■□ 3.04
USP6NL-204ENST00000606752 RANGAP1P46060 587 aaPredicted RBP34.02■■■■□ 3.04
USP6NL-204ENST00000606752 PBRM1Q86U86 1689 aa34■■■■□ 3.03
USP6NL-204ENST00000606752 FHAD1B1AJZ9 1412 aa33.96■■■■□ 3.03
USP6NL-204ENST00000606752 EIF4G3O43432 1585 aaKnown RBP33.93■■■■□ 3.02
USP6NL-204ENST00000606752 ADAMTS12P58397 1594 aa33.87■■■■□ 3.01
USP6NL-204ENST00000606752 VPS8Q8N3P4 1428 aa33.84■■■■□ 3.01
USP6NL-204ENST00000606752 SNAPC4Q5SXM2 1469 aa33.81■■■■□ 3
USP6NL-204ENST00000606752 ARHGAP35Q9NRY4 1499 aa33.81■■■■□ 3
USP6NL-204ENST00000606752 ARAP1Q96P48 1450 aa33.79■■■■□ 3
USP6NL-204ENST00000606752 MAGI1Q96QZ7 1491 aaPredicted RBP33.76■■■■□ 3
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms