RNA–Protein interactions for RNA: ENST00000497469.5

RNF220-218, Transcript of ring finger protein 220, humanhuman

TSL 2

Gene RNF220, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF220-218ENST00000497469 NISCHQ9Y2I1 1504 aa37.52■■■■□ 3.6
RNF220-218ENST00000497469 ABCC9O60706 1549 aa36.02■■■■□ 3.36
RNF220-218ENST00000497469 DNAJC5BQ9UF47 199 aa35.18■■■■□ 3.22
RNF220-218ENST00000497469 CCDC180Q9P1Z9 1646 aa34.27■■■■□ 3.08
RNF220-218ENST00000497469 RB1CC1Q8TDY2 1594 aa33.42■■■□□ 2.94
RNF220-218ENST00000497469 PABPN1Q86U42 306 aaKnown RBP eCLIP33.32■■■□□ 2.92
RNF220-218ENST00000497469 DNAJC5Q9H3Z4 198 aa33.31■■■□□ 2.92
RNF220-218ENST00000497469 NACADO15069 1562 aa32.76■■■□□ 2.84
RNF220-218ENST00000497469 UNC13AQ9UPW8 1703 aa32.72■■■□□ 2.83
RNF220-218ENST00000497469 BICRAQ9NZM4 1560 aa32.59■■■□□ 2.81
RNF220-218ENST00000497469 CECR2Q9BXF3 1484 aa32.54■■■□□ 2.8
RNF220-218ENST00000497469 DCAF8L2P0C7V8 631 aa32.51■■■□□ 2.79
RNF220-218ENST00000497469 CC2D2AQ9P2K1 1620 aa32.37■■■□□ 2.77
RNF220-218ENST00000497469 EIF4G1Q04637 1599 aaKnown RBP31.9■■■□□ 2.7
RNF220-218ENST00000497469 SHROOM4Q9ULL8 1493 aa31.78■■■□□ 2.68
RNF220-218ENST00000497469 MYO15BQ96JP2 1530 aa31.7■■■□□ 2.66
RNF220-218ENST00000497469 CUX2O14529 1486 aa31.51■■■□□ 2.63
RNF220-218ENST00000497469 TRIM41Q8WV44 630 aa31.39■■■□□ 2.62
RNF220-218ENST00000497469 SCRIBQ14160 1630 aa31.34■■■□□ 2.61
RNF220-218ENST00000497469 ERCC6Q03468 1493 aa31.15■■■□□ 2.58
RNF220-218ENST00000497469 ZCCHC6Q5VYS8 1495 aaKnown RBP30.77■■■□□ 2.52
RNF220-218ENST00000497469 DCAF1Q9Y4B6 1507 aa30.76■■■□□ 2.51
RNF220-218ENST00000497469 NESP48681 1621 aa30.51■■■□□ 2.48
RNF220-218ENST00000497469 THOC2Q8NI27 1593 aaKnown RBP30.43■■■□□ 2.46
RNF220-218ENST00000497469 NCAPD3P42695 1498 aa30.29■■■□□ 2.44
RNF220-218ENST00000497469 SMARCA2P51531 1590 aa30.22■■■□□ 2.43
RNF220-218ENST00000497469 ATAD2BQ9ULI0 1458 aa30.05■■■□□ 2.4
RNF220-218ENST00000497469 KIF21AQ7Z4S6 1674 aa30■■■□□ 2.39
RNF220-218ENST00000497469 BAZ1AQ9NRL2 1556 aaPredicted RBP29.95■■■□□ 2.39
RNF220-218ENST00000497469 HMGXB3Q12766 1538 aa29.92■■■□□ 2.38
RNF220-218ENST00000497469 LAMC3Q9Y6N6 1575 aa29.86■■■□□ 2.37
RNF220-218ENST00000497469 OSCARQ8IYS5 282 aa29.83■■■□□ 2.37
RNF220-218ENST00000497469 AEBP2Q6ZN18 517 aaPredicted RBP29.81■■■□□ 2.36
RNF220-218ENST00000497469 PDS5BQ9NTI5 1447 aa29.74■■■□□ 2.35
RNF220-218ENST00000497469 RIMBP3CA6NJZ7 1639 aa29.71■■■□□ 2.35
RNF220-218ENST00000497469 RIMBP3BA6NNM3 1639 aa29.71■■■□□ 2.35
RNF220-218ENST00000497469 RIMBP3Q9UFD9 1639 aa29.71■■■□□ 2.35
RNF220-218ENST00000497469 BAZ1BQ9UIG0 1483 aaKnown RBP29.68■■■□□ 2.34
RNF220-218ENST00000497469 MRC2Q9UBG0 1479 aa29.65■■■□□ 2.34
RNF220-218ENST00000497469 SMARCA4P51532 1647 aa29.63■■■□□ 2.33
RNF220-218ENST00000497469 WDR62O43379 1518 aa29.61■■■□□ 2.33
RNF220-218ENST00000497469 TRHP20396 242 aaPredicted RBP29.56■■■□□ 2.32
RNF220-218ENST00000497469 ARHGEF11O15085 1522 aa29.44■■■□□ 2.3
RNF220-218ENST00000497469 CYB5RLQ6IPT4 315 aa29.35■■■□□ 2.29
RNF220-218ENST00000497469 CADPSQ9ULU8 1353 aa29.33■■■□□ 2.29
RNF220-218ENST00000497469 PEG3Q9GZU2 1588 aa29.25■■■□□ 2.27
RNF220-218ENST00000497469 CEP164Q9UPV0 1460 aa29.22■■■□□ 2.27
RNF220-218ENST00000497469 ARAP1Q96P48 1450 aa29.08■■■□□ 2.25
RNF220-218ENST00000497469 FANCD2Q9BXW9 1451 aa29.06■■■□□ 2.24
RNF220-218ENST00000497469 MROH2BQ7Z745 1585 aa28.98■■■□□ 2.23
RNF220-218ENST00000497469 URB2Q14146 1524 aaKnown RBP28.95■■■□□ 2.23
RNF220-218ENST00000497469 ZNF608Q9ULD9 1512 aaPredicted RBP28.89■■■□□ 2.22
RNF220-218ENST00000497469 ILDR1Q86SU0 546 aaPredicted RBP28.86■■■□□ 2.21
RNF220-218ENST00000497469 CHD1O14646 1710 aa28.69■■■□□ 2.18
RNF220-218ENST00000497469 CFTRP13569 1480 aa28.66■■■□□ 2.18
RNF220-218ENST00000497469 IFT140Q96RY7 1462 aa28.66■■■□□ 2.18
RNF220-218ENST00000497469 RSF1Q96T23 1441 aaPredicted RBP28.65■■■□□ 2.18
RNF220-218ENST00000497469 EIF4G3O43432 1585 aaKnown RBP28.61■■■□□ 2.17
RNF220-218ENST00000497469 FBLN2P98095 1184 aa28.57■■■□□ 2.16
RNF220-218ENST00000497469 WIZO95785 1651 aa28.57■■■□□ 2.16
RNF220-218ENST00000497469 AQRO60306 1485 aaKnown RBP eCLIP28.41■■■□□ 2.144e-7■■■■□ 23.8
RNF220-218ENST00000497469 TOPBP1Q92547 1522 aa28.33■■■□□ 2.13
RNF220-218ENST00000497469 CLASP1Q7Z460 1538 aa28.28■■■□□ 2.12
RNF220-218ENST00000497469 PRDM2Q13029 1718 aa28.21■■■□□ 2.11
RNF220-218ENST00000497469 TARBP1Q13395 1621 aaKnown RBP28.18■■■□□ 2.1
RNF220-218ENST00000497469 GAPVD1Q14C86 1478 aa28.13■■■□□ 2.09
RNF220-218ENST00000497469 SYNJ1O43426 1573 aa28.09■■■□□ 2.09
RNF220-218ENST00000497469 KDM4FA0A1W2PPD8 638 aa28.08■■■□□ 2.09
RNF220-218ENST00000497469 SNAPC4Q5SXM2 1469 aa28.08■■■□□ 2.09
RNF220-218ENST00000497469 DNMBPQ6XZF7 1577 aa28.06■■■□□ 2.08
RNF220-218ENST00000497469 TOP2AP11388 1531 aaKnown RBP28.02■■■□□ 2.08
RNF220-218ENST00000497469 CHMP7Q8WUX9 453 aaPredicted RBP28.01■■■□□ 2.07
RNF220-218ENST00000497469 ABCC8Q09428 1581 aa28■■■□□ 2.07
RNF220-218ENST00000497469 TDRD9Q8NDG6 1382 aaKnown RBP27.99■■■□□ 2.07
RNF220-218ENST00000497469 POLA1P09884 1462 aaPredicted RBP27.95■■■□□ 2.07
RNF220-218ENST00000497469 RAD54L2Q9Y4B4 1467 aa27.95■■■□□ 2.07
RNF220-218ENST00000497469 KIF13AQ9H1H9 1805 aa27.9■■■□□ 2.06
RNF220-218ENST00000497469 ERCC6L2Q5T890 1561 aa27.86■■■□□ 2.05
RNF220-218ENST00000497469 MAGI1Q96QZ7 1491 aaPredicted RBP27.82■■■□□ 2.04
RNF220-218ENST00000497469 SYNJ2O15056 1496 aa27.77■■■□□ 2.04
RNF220-218ENST00000497469 SOGA1O94964 1423 aa27.77■■■□□ 2.04
RNF220-218ENST00000497469 CCDC88BA6NC98 1476 aa27.76■■■□□ 2.03
RNF220-218ENST00000497469 GRIN2BQ13224 1484 aa27.69■■■□□ 2.02
RNF220-218ENST00000497469 WDR97A6NE52 1622 aa27.63■■■□□ 2.01
RNF220-218ENST00000497469 KDM6BO15054 1643 aa27.63■■■□□ 2.01
RNF220-218ENST00000497469 HECW2Q9P2P5 1572 aa27.62■■■□□ 2.01
RNF220-218ENST00000497469 FAM69CQ0P6D2 419 aa27.62■■■□□ 2.01
RNF220-218ENST00000497469 FGD5Q6ZNL6 1462 aa27.57■■■□□ 2
RNF220-218ENST00000497469 CEP170Q5SW79 1584 aa27.56■■■□□ 2
RNF220-218ENST00000497469 ABCC10Q5T3U5 1492 aa27.51■■■□□ 2
RNF220-218ENST00000497469 PBRM1Q86U86 1689 aa27.51■■□□□ 1.99
RNF220-218ENST00000497469 FBXO41Q8TF61 875 aa27.5■■□□□ 1.99
RNF220-218ENST00000497469 ADGRL1O94910 1474 aa27.49■■□□□ 1.99
RNF220-218ENST00000497469 DIP2BQ9P265 1576 aa27.44■■□□□ 1.98
RNF220-218ENST00000497469 TSPOAP1O95153 1857 aa27.38■■□□□ 1.97
RNF220-218ENST00000497469 GRIN2AQ12879 1464 aa27.36■■□□□ 1.97
RNF220-218ENST00000497469 SHROOM2Q13796 1616 aa27.34■■□□□ 1.97
RNF220-218ENST00000497469 LMTK3Q96Q04 1460 aa27.34■■□□□ 1.97
RNF220-218ENST00000497469 CUX1P39880 1505 aa27.31■■□□□ 1.96
RNF220-218ENST00000497469 NUP160Q12769 1436 aa27.3■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms