Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB3O15347 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
HMGB3O15347 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB3O15347 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB3O15347 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB3O15347 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB3O15347 EXOC3-AS1-202ENST00000623673 1663 ntBASIC16.01■□□□□ 0.15
HMGB3O15347 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB3O15347 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB3O15347 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB3O15347 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB3O15347 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB3O15347 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC16.01■□□□□ 0.15
HMGB3O15347 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC16.01■□□□□ 0.15
HMGB3O15347 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
HMGB3O15347 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB3O15347 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC16■□□□□ 0.15
HMGB3O15347 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HMGB3O15347 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
HMGB3O15347 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
HMGB3O15347 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HMGB3O15347 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HMGB3O15347 UNC93B8-201ENST00000511903 705 ntBASIC16■□□□□ 0.15
HMGB3O15347 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
HMGB3O15347 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC16■□□□□ 0.15
HMGB3O15347 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
HMGB3O15347 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HMGB3O15347 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC16■□□□□ 0.15
HMGB3O15347 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC16■□□□□ 0.15
HMGB3O15347 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
HMGB3O15347 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC16■□□□□ 0.15
HMGB3O15347 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC15.99■□□□□ 0.15
HMGB3O15347 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB3O15347 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC15.99■□□□□ 0.15
HMGB3O15347 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB3O15347 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
HMGB3O15347 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB3O15347 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB3O15347 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC15.99■□□□□ 0.15
HMGB3O15347 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB3O15347 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB3O15347 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB3O15347 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC15.99■□□□□ 0.15
HMGB3O15347 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB3O15347 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB3O15347 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB3O15347 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB3O15347 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
HMGB3O15347 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB3O15347 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB3O15347 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB3O15347 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
HMGB3O15347 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC15.99■□□□□ 0.15
HMGB3O15347 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC15.99■□□□□ 0.15
HMGB3O15347 ASL-203ENST00000380839 1765 ntTSL 5 BASIC15.99■□□□□ 0.15
HMGB3O15347 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB3O15347 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB3O15347 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
HMGB3O15347 AC026471.1-201ENST00000564629 3026 ntBASIC15.99■□□□□ 0.15
HMGB3O15347 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
HMGB3O15347 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB3O15347 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB3O15347 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC15.99■□□□□ 0.15
HMGB3O15347 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB3O15347 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB3O15347 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB3O15347 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
HMGB3O15347 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC15.98■□□□□ 0.15
HMGB3O15347 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB3O15347 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC15.98■□□□□ 0.15
HMGB3O15347 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
HMGB3O15347 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
HMGB3O15347 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC15.98■□□□□ 0.15
HMGB3O15347 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB3O15347 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC15.98■□□□□ 0.15
HMGB3O15347 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
HMGB3O15347 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB3O15347 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB3O15347 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB3O15347 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
HMGB3O15347 NEFHP1-201ENST00000412845 2629 ntBASIC15.98■□□□□ 0.15
HMGB3O15347 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB3O15347 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC15.98■□□□□ 0.15
HMGB3O15347 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC15.98■□□□□ 0.15
HMGB3O15347 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB3O15347 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
HMGB3O15347 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB3O15347 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
HMGB3O15347 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC15.98■□□□□ 0.15
HMGB3O15347 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC15.98■□□□□ 0.15
HMGB3O15347 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB3O15347 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
HMGB3O15347 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
HMGB3O15347 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
HMGB3O15347 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB3O15347 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB3O15347 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB3O15347 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB3O15347 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB3O15347 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms