RNA–Protein interactions for RNA: ENST00000375604.6

MCF2L-203, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

APPRIS P3 TSL 2 BASIC

Gene MCF2L, Length 6,445 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-203ENST00000375604 DCAF8L2P0C7V8 631 aa30.62■■■□□ 2.49
MCF2L-203ENST00000375604 SUPT5HO00267 1087 aaKnown RBP28.76■■■□□ 2.2
MCF2L-203ENST00000375604 EHMT2Q96KQ7 1210 aa28.6■■■□□ 2.17
MCF2L-203ENST00000375604 SHROOM4Q9ULL8 1493 aa28.45■■■□□ 2.15
MCF2L-203ENST00000375604 NISCHQ9Y2I1 1504 aa27.9■■■□□ 2.06
MCF2L-203ENST00000375604 TTBK1Q5TCY1 1321 aaPredicted RBP27.51■■□□□ 1.99
MCF2L-203ENST00000375604 FAM9AQ8IZU1 332 aaPredicted RBP27.35■■□□□ 1.97
MCF2L-203ENST00000375604 RANGAP1P46060 587 aaPredicted RBP27.2■■□□□ 1.94
MCF2L-203ENST00000375604 APLP2Q06481 763 aa27.07■■□□□ 1.92
MCF2L-203ENST00000375604 ATP1B4Q9UN42 357 aaPredicted RBP26.76■■□□□ 1.87
MCF2L-203ENST00000375604 PCGF6Q9BYE7 350 aa26.7■■□□□ 1.87
MCF2L-203ENST00000375604 PELP1Q8IZL8 1130 aaKnown RBP26.56■■□□□ 1.84
MCF2L-203ENST00000375604 TRIM41Q8WV44 630 aa26.34■■□□□ 1.81
MCF2L-203ENST00000375604 PPARGC1BQ86YN6 1023 aaKnown RBP26.32■■□□□ 1.8
MCF2L-203ENST00000375604 CCER1Q8TC90 406 aaPredicted RBP26.22■■□□□ 1.79
MCF2L-203ENST00000375604 UBTFP17480 764 aaKnown RBP26.22■■□□□ 1.79
MCF2L-203ENST00000375604 YTHDC1Q96MU7 727 aaKnown RBP26.05■■□□□ 1.76
MCF2L-203ENST00000375604 ERICH6Q7L0X2 663 aa25.94■■□□□ 1.74
MCF2L-203ENST00000375604 ITGAEP38570 1179 aa25.76■■□□□ 1.71
MCF2L-203ENST00000375604 CENPBP07199 599 aaPredicted RBP25.75■■□□□ 1.71
MCF2L-203ENST00000375604 MYT1LQ9UL68 1186 aa25.74■■□□□ 1.71
MCF2L-203ENST00000375604 CHIC1Q5VXU3 224 aa25.68■■□□□ 1.7
MCF2L-203ENST00000375604 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.66■■□□□ 1.7
MCF2L-203ENST00000375604 CNGB1Q14028 1251 aaPredicted RBP25.66■■□□□ 1.7
MCF2L-203ENST00000375604 HNRNPUL2Q1KMD3 747 aaKnown RBP25.66■■□□□ 1.7
MCF2L-203ENST00000375604 POLR3GLQ9BT43 218 aa25.65■■□□□ 1.7
MCF2L-203ENST00000375604 ZEB1P37275 1124 aaPredicted RBP25.58■■□□□ 1.69
MCF2L-203ENST00000375604 LOC105371045A0A1W2PR82 267 aa25.44■■□□□ 1.66
MCF2L-203ENST00000375604 NEFLP07196 543 aa25.43■■□□□ 1.66
MCF2L-203ENST00000375604 SLC4A1APQ9BWU0 796 aaKnown RBP25.2■■□□□ 1.62
MCF2L-203ENST00000375604 TRIM26Q12899 539 aaPredicted RBP25.15■■□□□ 1.62
MCF2L-203ENST00000375604 PABPN1Q86U42 306 aaKnown RBP eCLIP25.08■■□□□ 1.611e-6■■■□□ 17.1
MCF2L-203ENST00000375604 MYT1Q01538 1121 aa25■■□□□ 1.59
MCF2L-203ENST00000375604 HRCP23327 699 aa24.94■■□□□ 1.58
MCF2L-203ENST00000375604 FAM50AQ14320 339 aaKnown RBP24.88■■□□□ 1.57
MCF2L-203ENST00000375604 DAXXQ9UER7 740 aaPredicted RBP24.84■■□□□ 1.57
MCF2L-203ENST00000375604 ABCC9O60706 1549 aa24.84■■□□□ 1.57
MCF2L-203ENST00000375604 NEUROD1Q13562 356 aa24.75■■□□□ 1.55
MCF2L-203ENST00000375604 TRIM52Q96A61 297 aa24.74■■□□□ 1.55
MCF2L-203ENST00000375604 FBLN2P98095 1184 aa24.71■■□□□ 1.55
MCF2L-203ENST00000375604 ARID3CA6NKF2 412 aa24.67■■□□□ 1.54
MCF2L-203ENST00000375604 ZNF326Q5BKZ1 582 aaKnown RBP24.63■■□□□ 1.53
MCF2L-203ENST00000375604 BCL11AQ9H165 835 aa24.54■■□□□ 1.52
MCF2L-203ENST00000375604 CLSPNQ9HAW4 1339 aa24.51■■□□□ 1.51
MCF2L-203ENST00000375604 BCANQ96GW7 911 aa24.49■■□□□ 1.51
MCF2L-203ENST00000375604 P3H3Q8IVL6 736 aa24.48■■□□□ 1.51
MCF2L-203ENST00000375604 DIEXFQ68CQ4 756 aaKnown RBP24.47■■□□□ 1.51
MCF2L-203ENST00000375604 SLC24A1O60721 1099 aa24.41■■□□□ 1.5
MCF2L-203ENST00000375604 ZNF316A6NFI3 1004 aaPredicted RBP24.34■■□□□ 1.49
MCF2L-203ENST00000375604 PLPPR3Q6T4P5 718 aa24.33■■□□□ 1.48
MCF2L-203ENST00000375604 ZNF777Q9ULD5 760 aaPredicted RBP24.21■■□□□ 1.47
MCF2L-203ENST00000375604 ANP32CO43423 234 aa24.06■■□□□ 1.44
MCF2L-203ENST00000375604 RTL5Q5HYW3 569 aaPredicted RBP24.06■■□□□ 1.44
MCF2L-203ENST00000375604 CANXP27824 592 aaKnown RBP23.99■■□□□ 1.43
MCF2L-203ENST00000375604 GTF3C3Q9Y5Q9 886 aa23.99■■□□□ 1.43
MCF2L-203ENST00000375604 ZBTB47Q9UFB7 747 aaPredicted RBP23.91■■□□□ 1.42
MCF2L-203ENST00000375604 SENP3Q9H4L4 574 aaPredicted RBP23.91■■□□□ 1.42
MCF2L-203ENST00000375604 CHGAP10645 457 aaKnown RBP23.9■■□□□ 1.42
MCF2L-203ENST00000375604 SCRIBQ14160 1630 aa23.83■■□□□ 1.4
MCF2L-203ENST00000375604 CDK11AQ9UQ88 783 aaPredicted RBP23.76■■□□□ 1.39
MCF2L-203ENST00000375604 NPM2Q86SE8 214 aaKnown RBP23.75■■□□□ 1.39
MCF2L-203ENST00000375604 SALL2Q9Y467 1007 aaPredicted RBP23.75■■□□□ 1.39
MCF2L-203ENST00000375604 STAG3Q9UJ98 1225 aa23.73■■□□□ 1.39
MCF2L-203ENST00000375604 CSRNP3Q8WYN3 585 aa23.72■■□□□ 1.39
MCF2L-203ENST00000375604 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.71■■□□□ 1.397e-7■■□□□ 14.2
MCF2L-203ENST00000375604 ESF1Q9H501 851 aaKnown RBP23.71■■□□□ 1.39
MCF2L-203ENST00000375604 NEFMP07197 916 aa23.71■■□□□ 1.39
MCF2L-203ENST00000375604 CHIC2Q9UKJ5 165 aa23.7■■□□□ 1.39
MCF2L-203ENST00000375604 PLEKHG5O94827 1062 aa23.69■■□□□ 1.38
MCF2L-203ENST00000375604 FAM9BQ8IZU0 186 aa23.56■■□□□ 1.36
MCF2L-203ENST00000375604 SCAF1Q9H7N4 1312 aaKnown RBP23.55■■□□□ 1.36
MCF2L-203ENST00000375604 KDM2AQ9Y2K7 1162 aa23.52■■□□□ 1.36
MCF2L-203ENST00000375604 HIRIP3Q9BW71 556 aaPredicted RBP23.5■■□□□ 1.35
MCF2L-203ENST00000375604 DDX10Q13206 875 aaKnown RBP23.49■■□□□ 1.35
MCF2L-203ENST00000375604 ZBTB7CA1YPR0 619 aa23.46■■□□□ 1.35
MCF2L-203ENST00000375604 NPM1P06748 294 aaKnown RBP eCLIP23.45■■□□□ 1.35
MCF2L-203ENST00000375604 FKBP8Q14318 412 aa23.45■■□□□ 1.35
MCF2L-203ENST00000375604 A0A0G2JS52 829 aa23.44■■□□□ 1.34
MCF2L-203ENST00000375604 TONSLQ96HA7 1378 aa23.44■■□□□ 1.34
MCF2L-203ENST00000375604 SENP3-EIF4A1A0A087X0R7 540 aa23.42■■□□□ 1.34
MCF2L-203ENST00000375604 HNRNPUQ00839 825 aaKnown RBP eCLIP23.39■■□□□ 1.34
MCF2L-203ENST00000375604 ACIN1Q9UKV3 1341 aaKnown RBP23.35■■□□□ 1.33
MCF2L-203ENST00000375604 ANP32AP39687 249 aaKnown RBP23.34■■□□□ 1.33
MCF2L-203ENST00000375604 KCNH8Q96L42 1107 aa23.31■■□□□ 1.32
MCF2L-203ENST00000375604 IRX6P78412 446 aaPredicted RBP23.31■■□□□ 1.32
MCF2L-203ENST00000375604 CHMP7Q8WUX9 453 aaPredicted RBP23.27■■□□□ 1.31
MCF2L-203ENST00000375604 ARXQ96QS3 562 aa23.26■■□□□ 1.31
MCF2L-203ENST00000375604 HSP90AA1P07900 732 aaKnown RBP23.25■■□□□ 1.31
MCF2L-203ENST00000375604 C14orf37Q86TY3 774 aa23.24■■□□□ 1.31
MCF2L-203ENST00000375604 RRP7BPQ9NSQ0 103 aa23.24■■□□□ 1.31
MCF2L-203ENST00000375604 TMC1Q8TDI8 760 aa23.19■■□□□ 1.3
MCF2L-203ENST00000375604 WDR43Q15061 677 aaKnown RBP eCLIP23.14■■□□□ 1.29
MCF2L-203ENST00000375604 NBR1Q14596 966 aa23.12■■□□□ 1.29
MCF2L-203ENST00000375604 TSPY4P0CV99 314 aa23.11■■□□□ 1.29
MCF2L-203ENST00000375604 TSPY10P0CW01 314 aa23.11■■□□□ 1.29
MCF2L-203ENST00000375604 RGL3Q3MIN7 710 aa23.1■■□□□ 1.29
MCF2L-203ENST00000375604 MTUS2Q5JR59 1369 aa23.1■■□□□ 1.29
MCF2L-203ENST00000375604 MRS2Q9HD23 443 aa23.07■■□□□ 1.28
MCF2L-203ENST00000375604 ARID4BQ4LE39 1312 aaPredicted RBP23.03■■□□□ 1.28
MCF2L-203ENST00000375604 PPP1R15AO75807 674 aaPredicted RBP23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms