RNA–Protein interactions for RNA: ENST00000576409.5

ATPAF1-214, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ATPAF1, Length 4,158 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-214ENST00000576409 NISCHQ9Y2I1 1504 aa30.94■■■□□ 2.54
ATPAF1-214ENST00000576409 DCAF8L2P0C7V8 631 aa30.83■■■□□ 2.53
ATPAF1-214ENST00000576409 SUPT5HO00267 1087 aaKnown RBP30.47■■■□□ 2.47
ATPAF1-214ENST00000576409 SHROOM4Q9ULL8 1493 aa30.12■■■□□ 2.41
ATPAF1-214ENST00000576409 EHMT2Q96KQ7 1210 aa29.36■■■□□ 2.29
ATPAF1-214ENST00000576409 PCGF6Q9BYE7 350 aa29.16■■■□□ 2.26
ATPAF1-214ENST00000576409 FAM9AQ8IZU1 332 aaPredicted RBP28.66■■■□□ 2.18
ATPAF1-214ENST00000576409 TTBK1Q5TCY1 1321 aaPredicted RBP28.38■■■□□ 2.13
ATPAF1-214ENST00000576409 PPARGC1BQ86YN6 1023 aaKnown RBP28.14■■■□□ 2.09
ATPAF1-214ENST00000576409 HRCP23327 699 aa28.12■■■□□ 2.09
ATPAF1-214ENST00000576409 LOC105371045A0A1W2PR82 267 aa28.01■■■□□ 2.07
ATPAF1-214ENST00000576409 CHIC1Q5VXU3 224 aa27.88■■■□□ 2.05
ATPAF1-214ENST00000576409 TRIM41Q8WV44 630 aa27.86■■■□□ 2.05
ATPAF1-214ENST00000576409 CCER1Q8TC90 406 aaPredicted RBP27.75■■■□□ 2.03
ATPAF1-214ENST00000576409 ZEB1P37275 1124 aaPredicted RBP27.61■■■□□ 2.01
ATPAF1-214ENST00000576409 RANGAP1P46060 587 aaPredicted RBP27.6■■■□□ 2.01
ATPAF1-214ENST00000576409 TRIM26Q12899 539 aaPredicted RBP27.58■■■□□ 2.01
ATPAF1-214ENST00000576409 YTHDC1Q96MU7 727 aaKnown RBP27.51■■□□□ 1.99
ATPAF1-214ENST00000576409 CENPBP07199 599 aaPredicted RBP27.45■■□□□ 1.99
ATPAF1-214ENST00000576409 APLP2Q06481 763 aa27.44■■□□□ 1.98
ATPAF1-214ENST00000576409 PELP1Q8IZL8 1130 aaKnown RBP27.3■■□□□ 1.96
ATPAF1-214ENST00000576409 UBTFP17480 764 aaKnown RBP27.21■■□□□ 1.95
ATPAF1-214ENST00000576409 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.1■■□□□ 1.93
ATPAF1-214ENST00000576409 HNRNPUL2Q1KMD3 747 aaKnown RBP26.8■■□□□ 1.88
ATPAF1-214ENST00000576409 ATP1B4Q9UN42 357 aaPredicted RBP26.73■■□□□ 1.87
ATPAF1-214ENST00000576409 DIEXFQ68CQ4 756 aaKnown RBP26.72■■□□□ 1.87
ATPAF1-214ENST00000576409 GTF3C3Q9Y5Q9 886 aa26.61■■□□□ 1.85
ATPAF1-214ENST00000576409 ITGAEP38570 1179 aa26.59■■□□□ 1.85
ATPAF1-214ENST00000576409 MYO15BQ96JP2 1530 aa26.4■■□□□ 1.82
ATPAF1-214ENST00000576409 ERICH6Q7L0X2 663 aa26.4■■□□□ 1.82
ATPAF1-214ENST00000576409 NEFLP07196 543 aa26.32■■□□□ 1.8
ATPAF1-214ENST00000576409 MYT1Q01538 1121 aa26.32■■□□□ 1.8
ATPAF1-214ENST00000576409 ACIN1Q9UKV3 1341 aaKnown RBP26.25■■□□□ 1.79
ATPAF1-214ENST00000576409 SCAF1Q9H7N4 1312 aaKnown RBP26.21■■□□□ 1.79
ATPAF1-214ENST00000576409 NEUROD1Q13562 356 aa26.12■■□□□ 1.77
ATPAF1-214ENST00000576409 CNGB1Q14028 1251 aaPredicted RBP26.1■■□□□ 1.77
ATPAF1-214ENST00000576409 BCANQ96GW7 911 aa26.09■■□□□ 1.77
ATPAF1-214ENST00000576409 ZNF316A6NFI3 1004 aaPredicted RBP26.01■■□□□ 1.75
ATPAF1-214ENST00000576409 DCAF1Q9Y4B6 1507 aa25.98■■□□□ 1.75
ATPAF1-214ENST00000576409 POLR3GLQ9BT43 218 aa25.85■■□□□ 1.73
ATPAF1-214ENST00000576409 PABPN1Q86U42 306 aaKnown RBP eCLIP25.82■■□□□ 1.72
ATPAF1-214ENST00000576409 ZCCHC6Q5VYS8 1495 aaKnown RBP25.78■■□□□ 1.72
ATPAF1-214ENST00000576409 ABCC9O60706 1549 aa25.75■■□□□ 1.71
ATPAF1-214ENST00000576409 FAM50AQ14320 339 aaKnown RBP25.68■■□□□ 1.7
ATPAF1-214ENST00000576409 CSRNP3Q8WYN3 585 aa25.67■■□□□ 1.7
ATPAF1-214ENST00000576409 MIER1Q8N108 512 aa25.6■■□□□ 1.69
ATPAF1-214ENST00000576409 P3H3Q8IVL6 736 aa25.38■■□□□ 1.65
ATPAF1-214ENST00000576409 SCRIBQ14160 1630 aa25.34■■□□□ 1.65
ATPAF1-214ENST00000576409 FKBP8Q14318 412 aa25.34■■□□□ 1.65
ATPAF1-214ENST00000576409 ANP32CO43423 234 aa25.31■■□□□ 1.64
ATPAF1-214ENST00000576409 DDX10Q13206 875 aaKnown RBP25.3■■□□□ 1.64
ATPAF1-214ENST00000576409 TRIM52Q96A61 297 aa25.28■■□□□ 1.64
ATPAF1-214ENST00000576409 HIRIP3Q9BW71 556 aaPredicted RBP25.26■■□□□ 1.63
ATPAF1-214ENST00000576409 RSF1Q96T23 1441 aaPredicted RBP25.2■■□□□ 1.62
ATPAF1-214ENST00000576409 ZNF326Q5BKZ1 582 aaKnown RBP25.15■■□□□ 1.62
ATPAF1-214ENST00000576409 CDK11AQ9UQ88 783 aaPredicted RBP25.13■■□□□ 1.61
ATPAF1-214ENST00000576409 ARID3CA6NKF2 412 aa25.12■■□□□ 1.61
ATPAF1-214ENST00000576409 CCDC180Q9P1Z9 1646 aa25.1■■□□□ 1.61
ATPAF1-214ENST00000576409 DAXXQ9UER7 740 aaPredicted RBP25.09■■□□□ 1.61
ATPAF1-214ENST00000576409 RTL5Q5HYW3 569 aaPredicted RBP25.05■■□□□ 1.6
ATPAF1-214ENST00000576409 IRX6P78412 446 aaPredicted RBP25.04■■□□□ 1.6
ATPAF1-214ENST00000576409 HNRNPUQ00839 825 aaKnown RBP eCLIP24.99■■□□□ 1.59
ATPAF1-214ENST00000576409 CEP162Q5TB80 1403 aa24.97■■□□□ 1.59
ATPAF1-214ENST00000576409 FAM9BQ8IZU0 186 aa24.87■■□□□ 1.57
ATPAF1-214ENST00000576409 SENP3-EIF4A1A0A087X0R7 540 aa24.84■■□□□ 1.57
ATPAF1-214ENST00000576409 MYT1LQ9UL68 1186 aa24.83■■□□□ 1.57
ATPAF1-214ENST00000576409 CLIP1P30622 1438 aa24.83■■□□□ 1.57
ATPAF1-214ENST00000576409 CLSPNQ9HAW4 1339 aa24.81■■□□□ 1.56
ATPAF1-214ENST00000576409 NPM2Q86SE8 214 aaKnown RBP24.8■■□□□ 1.56
ATPAF1-214ENST00000576409 SALL2Q9Y467 1007 aaPredicted RBP24.75■■□□□ 1.55
ATPAF1-214ENST00000576409 SUPT16HQ9Y5B9 1047 aaKnown RBP24.75■■□□□ 1.55
ATPAF1-214ENST00000576409 CHIC2Q9UKJ5 165 aa24.74■■□□□ 1.55
ATPAF1-214ENST00000576409 SLC4A1APQ9BWU0 796 aaKnown RBP24.73■■□□□ 1.55
ATPAF1-214ENST00000576409 TONSLQ96HA7 1378 aa24.73■■□□□ 1.55
ATPAF1-214ENST00000576409 CECR2Q9BXF3 1484 aa24.72■■□□□ 1.55
ATPAF1-214ENST00000576409 NBR1Q14596 966 aa24.71■■□□□ 1.55
ATPAF1-214ENST00000576409 SIN3AQ96ST3 1273 aa24.68■■□□□ 1.54
ATPAF1-214ENST00000576409 SOGA1O94964 1423 aa24.65■■□□□ 1.54
ATPAF1-214ENST00000576409 TNIKQ9UKE5 1360 aa24.61■■□□□ 1.53
ATPAF1-214ENST00000576409 ANP32EQ9BTT0 268 aa24.6■■□□□ 1.53
ATPAF1-214ENST00000576409 RB1CC1Q8TDY2 1594 aa24.6■■□□□ 1.53
ATPAF1-214ENST00000576409 ZNF777Q9ULD5 760 aaPredicted RBP24.58■■□□□ 1.53
ATPAF1-214ENST00000576409 ANP32AP39687 249 aaKnown RBP24.57■■□□□ 1.52
ATPAF1-214ENST00000576409 MRS2Q9HD23 443 aa24.54■■□□□ 1.52
ATPAF1-214ENST00000576409 FBLN2P98095 1184 aa24.53■■□□□ 1.52
ATPAF1-214ENST00000576409 GOLGA3Q08378 1498 aa24.52■■□□□ 1.52
ATPAF1-214ENST00000576409 BCL11AQ9H165 835 aa24.46■■□□□ 1.51
ATPAF1-214ENST00000576409 CCDC136Q96JN2 1154 aa24.46■■□□□ 1.51
ATPAF1-214ENST00000576409 RRP7BPQ9NSQ0 103 aa24.45■■□□□ 1.5
ATPAF1-214ENST00000576409 WRNQ14191 1432 aaPredicted RBP eCLIP24.44■■□□□ 1.5
ATPAF1-214ENST00000576409 KCNH8Q96L42 1107 aa24.42■■□□□ 1.5
ATPAF1-214ENST00000576409 KANK4Q5T7N3 995 aaPredicted RBP24.41■■□□□ 1.5
ATPAF1-214ENST00000576409 CCDC88BA6NC98 1476 aa24.39■■□□□ 1.5
ATPAF1-214ENST00000576409 ABCC8Q09428 1581 aa24.37■■□□□ 1.49
ATPAF1-214ENST00000576409 TMC1Q8TDI8 760 aa24.33■■□□□ 1.49
ATPAF1-214ENST00000576409 TSHZ2Q9NRE2 1034 aa24.33■■□□□ 1.49
ATPAF1-214ENST00000576409 EEA1Q15075 1411 aa24.33■■□□□ 1.49
ATPAF1-214ENST00000576409 EIF5BO60841 1220 aaKnown RBP24.33■■□□□ 1.49
ATPAF1-214ENST00000576409 MROH2BQ7Z745 1585 aa24.31■■□□□ 1.48
ATPAF1-214ENST00000576409 KDM2AQ9Y2K7 1162 aa24.31■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms