RNA–Protein interactions for RNA: ENST00000251775.8

SNX4-201, Transcript of sorting nexin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX4, Length 2,513 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX4-201ENST00000251775 NISCHQ9Y2I1 1504 aa39.53■■■■□ 3.92
SNX4-201ENST00000251775 CCDC180Q9P1Z9 1646 aa33.8■■■■□ 3
SNX4-201ENST00000251775 ZCCHC6Q5VYS8 1495 aaKnown RBP33.4■■■□□ 2.94
SNX4-201ENST00000251775 SHROOM4Q9ULL8 1493 aa33.39■■■□□ 2.94
SNX4-201ENST00000251775 DCAF8L2P0C7V8 631 aa32.65■■■□□ 2.82
SNX4-201ENST00000251775 SUPT5HO00267 1087 aaKnown RBP32.62■■■□□ 2.81
SNX4-201ENST00000251775 DCAF1Q9Y4B6 1507 aa32.49■■■□□ 2.79
SNX4-201ENST00000251775 CHIC1Q5VXU3 224 aa31.68■■■□□ 2.66
SNX4-201ENST00000251775 MYO15BQ96JP2 1530 aa31.65■■■□□ 2.66
SNX4-201ENST00000251775 HRCP23327 699 aa31.6■■■□□ 2.65
SNX4-201ENST00000251775 SCRIBQ14160 1630 aa31.54■■■□□ 2.64
SNX4-201ENST00000251775 ABCC9O60706 1549 aa31.48■■■□□ 2.63
SNX4-201ENST00000251775 NACADO15069 1562 aa31.25■■■□□ 2.59
SNX4-201ENST00000251775 RSF1Q96T23 1441 aaPredicted RBP31.17■■■□□ 2.58
SNX4-201ENST00000251775 PCGF6Q9BYE7 350 aa31.07■■■□□ 2.57
SNX4-201ENST00000251775 PPARGC1BQ86YN6 1023 aaKnown RBP30.87■■■□□ 2.53
SNX4-201ENST00000251775 RB1CC1Q8TDY2 1594 aa30.82■■■□□ 2.52
SNX4-201ENST00000251775 CECR2Q9BXF3 1484 aa30.82■■■□□ 2.52
SNX4-201ENST00000251775 MROH2BQ7Z745 1585 aa30.71■■■□□ 2.51
SNX4-201ENST00000251775 LOC105371045A0A1W2PR82 267 aa30.69■■■□□ 2.5
SNX4-201ENST00000251775 WIZO95785 1651 aa30.55■■■□□ 2.48
SNX4-201ENST00000251775 TRIM41Q8WV44 630 aa30.43■■■□□ 2.46
SNX4-201ENST00000251775 UNC13AQ9UPW8 1703 aa30.4■■■□□ 2.46
SNX4-201ENST00000251775 BAZ1AQ9NRL2 1556 aaPredicted RBP30.38■■■□□ 2.45
SNX4-201ENST00000251775 TRIM26Q12899 539 aaPredicted RBP30.28■■■□□ 2.44
SNX4-201ENST00000251775 SMARCA4P51532 1647 aa30.17■■■□□ 2.42
SNX4-201ENST00000251775 FAM9AQ8IZU1 332 aaPredicted RBP30.14■■■□□ 2.41
SNX4-201ENST00000251775 EIF4G1Q04637 1599 aaKnown RBP30.09■■■□□ 2.41
SNX4-201ENST00000251775 TOP2AP11388 1531 aaKnown RBP30.08■■■□□ 2.41
SNX4-201ENST00000251775 BICRAQ9NZM4 1560 aa29.98■■■□□ 2.39
SNX4-201ENST00000251775 CCDC88BA6NC98 1476 aa29.91■■■□□ 2.38
SNX4-201ENST00000251775 SMARCA2P51531 1590 aa29.91■■■□□ 2.38
SNX4-201ENST00000251775 ZEB1P37275 1124 aaPredicted RBP29.9■■■□□ 2.38
SNX4-201ENST00000251775 PABPN1Q86U42 306 aaKnown RBP eCLIP29.89■■■□□ 2.38
SNX4-201ENST00000251775 EHMT2Q96KQ7 1210 aa29.83■■■□□ 2.37
SNX4-201ENST00000251775 PELP1Q8IZL8 1130 aaKnown RBP29.82■■■□□ 2.36
SNX4-201ENST00000251775 ABCC8Q09428 1581 aa29.75■■■□□ 2.35
SNX4-201ENST00000251775 PEG3Q9GZU2 1588 aa29.64■■■□□ 2.34
SNX4-201ENST00000251775 SCAF1Q9H7N4 1312 aaKnown RBP29.62■■■□□ 2.33
SNX4-201ENST00000251775 ATAD2BQ9ULI0 1458 aa29.42■■■□□ 2.3
SNX4-201ENST00000251775 SOGA1O94964 1423 aa29.4■■■□□ 2.3
SNX4-201ENST00000251775 BAZ1BQ9UIG0 1483 aaKnown RBP29.31■■■□□ 2.28
SNX4-201ENST00000251775 RUSC2Q8N2Y8 1516 aa29.29■■■□□ 2.28
SNX4-201ENST00000251775 WRNQ14191 1432 aaPredicted RBP eCLIP29.27■■■□□ 2.28
SNX4-201ENST00000251775 EEA1Q15075 1411 aa29.25■■■□□ 2.27
SNX4-201ENST00000251775 CSRNP3Q8WYN3 585 aa29.2■■■□□ 2.27
SNX4-201ENST00000251775 SYNJ1O43426 1573 aa29.17■■■□□ 2.26
SNX4-201ENST00000251775 CEP162Q5TB80 1403 aa29.15■■■□□ 2.26
SNX4-201ENST00000251775 TNIKQ9UKE5 1360 aa29.15■■■□□ 2.26
SNX4-201ENST00000251775 ACIN1Q9UKV3 1341 aaKnown RBP29.04■■■□□ 2.24
SNX4-201ENST00000251775 GOLGA3Q08378 1498 aa29.03■■■□□ 2.24
SNX4-201ENST00000251775 UBTFP17480 764 aaKnown RBP29.01■■■□□ 2.23
SNX4-201ENST00000251775 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.96■■■□□ 2.23
SNX4-201ENST00000251775 NEUROD1Q13562 356 aa28.96■■■□□ 2.23
SNX4-201ENST00000251775 KIF21BO75037 1637 aa28.91■■■□□ 2.22
SNX4-201ENST00000251775 HMGXB3Q12766 1538 aa28.91■■■□□ 2.22
SNX4-201ENST00000251775 NCAPD3P42695 1498 aa28.9■■■□□ 2.22
SNX4-201ENST00000251775 CCER1Q8TC90 406 aaPredicted RBP28.89■■■□□ 2.22
SNX4-201ENST00000251775 CEP164Q9UPV0 1460 aa28.89■■■□□ 2.21
SNX4-201ENST00000251775 TOP2BQ02880 1626 aa28.85■■■□□ 2.21
SNX4-201ENST00000251775 TTBK1Q5TCY1 1321 aaPredicted RBP28.82■■■□□ 2.2
SNX4-201ENST00000251775 BIVM-ERCC5R4GMW8 1640 aa28.79■■■□□ 2.2
SNX4-201ENST00000251775 DIEXFQ68CQ4 756 aaKnown RBP28.76■■■□□ 2.19
SNX4-201ENST00000251775 GTF3C3Q9Y5Q9 886 aa28.74■■■□□ 2.19
SNX4-201ENST00000251775 RAPGEF2Q9Y4G8 1499 aa28.71■■■□□ 2.19
SNX4-201ENST00000251775 CENPBP07199 599 aaPredicted RBP28.7■■■□□ 2.18
SNX4-201ENST00000251775 CLIP1P30622 1438 aa28.66■■■□□ 2.18
SNX4-201ENST00000251775 CUX1P39880 1505 aa28.61■■■□□ 2.17
SNX4-201ENST00000251775 CFTRP13569 1480 aa28.6■■■□□ 2.17
SNX4-201ENST00000251775 VPS8Q8N3P4 1428 aa28.53■■■□□ 2.16
SNX4-201ENST00000251775 MYT1Q01538 1121 aa28.52■■■□□ 2.16
SNX4-201ENST00000251775 PRXQ9BXM0 1461 aa28.48■■■□□ 2.15
SNX4-201ENST00000251775 ERICH3Q5RHP9 1530 aa28.48■■■□□ 2.15
SNX4-201ENST00000251775 PRDM2Q13029 1718 aa28.47■■■□□ 2.15
SNX4-201ENST00000251775 RANGAP1P46060 587 aaPredicted RBP28.43■■■□□ 2.14
SNX4-201ENST00000251775 KIF27Q86VH2 1401 aa28.38■■■□□ 2.13
SNX4-201ENST00000251775 ZNF316A6NFI3 1004 aaPredicted RBP28.34■■■□□ 2.13
SNX4-201ENST00000251775 CC2D2AQ9P2K1 1620 aa28.3■■■□□ 2.12
SNX4-201ENST00000251775 CADPSQ9ULU8 1353 aa28.3■■■□□ 2.12
SNX4-201ENST00000251775 APLP2Q06481 763 aa28.3■■■□□ 2.12
SNX4-201ENST00000251775 ARAP1Q96P48 1450 aa28.27■■■□□ 2.12
SNX4-201ENST00000251775 HNRNPUL2Q1KMD3 747 aaKnown RBP28.22■■■□□ 2.11
SNX4-201ENST00000251775 CUX2O14529 1486 aa28.16■■■□□ 2.1
SNX4-201ENST00000251775 YTHDC1Q96MU7 727 aaKnown RBP28.14■■■□□ 2.1
SNX4-201ENST00000251775 FGD5Q6ZNL6 1462 aa28.12■■■□□ 2.09
SNX4-201ENST00000251775 IGF1RP08069 1367 aa28.1■■■□□ 2.09
SNX4-201ENST00000251775 MIER1Q8N108 512 aa28.07■■■□□ 2.08
SNX4-201ENST00000251775 ARHGAP35Q9NRY4 1499 aa28.06■■■□□ 2.08
SNX4-201ENST00000251775 FANCD2Q9BXW9 1451 aa28.03■■■□□ 2.08
SNX4-201ENST00000251775 KANK4Q5T7N3 995 aaPredicted RBP28.03■■■□□ 2.08
SNX4-201ENST00000251775 CARMIL1Q5VZK9 1371 aa27.96■■■□□ 2.07
SNX4-201ENST00000251775 NESP48681 1621 aa27.9■■■□□ 2.06
SNX4-201ENST00000251775 DNMBPQ6XZF7 1577 aa27.9■■■□□ 2.06
SNX4-201ENST00000251775 TOPBP1Q92547 1522 aa27.85■■■□□ 2.05
SNX4-201ENST00000251775 RRBP1Q9P2E9 1410 aaKnown RBP27.84■■■□□ 2.05
SNX4-201ENST00000251775 RAD54L2Q9Y4B4 1467 aa27.84■■■□□ 2.05
SNX4-201ENST00000251775 POLA1P09884 1462 aaPredicted RBP27.82■■■□□ 2.04
SNX4-201ENST00000251775 ABCA10Q8WWZ4 1543 aa27.8■■■□□ 2.04
SNX4-201ENST00000251775 TIAM1Q13009 1591 aa27.74■■■□□ 2.03
SNX4-201ENST00000251775 LAMC3Q9Y6N6 1575 aa27.71■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 1241 ms