Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC21.88■■□□□ 1.09
CD74P04233 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
CD74P04233 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CD74P04233 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CD74P04233 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CD74P04233 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC21.87■■□□□ 1.09
CD74P04233 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
CD74P04233 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CD74P04233 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC21.87■■□□□ 1.09
CD74P04233 AL031258.1-201ENST00000623562 325 ntBASIC21.86■■□□□ 1.09
CD74P04233 PROC-203ENST00000409048 1586 ntTSL 5 BASIC21.86■■□□□ 1.09
CD74P04233 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
CD74P04233 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CD74P04233 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC21.85■■□□□ 1.09
CD74P04233 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CD74P04233 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
CD74P04233 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC21.84■■□□□ 1.09
CD74P04233 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
CD74P04233 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC21.84■■□□□ 1.09
CD74P04233 AC010864.1-201ENST00000609407 1511 ntBASIC21.84■■□□□ 1.09
CD74P04233 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
CD74P04233 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
CD74P04233 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CD74P04233 WASH5P-204ENST00000632292 975 ntBASIC21.82■■□□□ 1.08
CD74P04233 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CD74P04233 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
CD74P04233 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC21.81■■□□□ 1.08
CD74P04233 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
CD74P04233 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC21.81■■□□□ 1.08
CD74P04233 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
CD74P04233 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC21.81■■□□□ 1.08
CD74P04233 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC21.81■■□□□ 1.08
CD74P04233 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
CD74P04233 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CD74P04233 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CD74P04233 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CD74P04233 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CD74P04233 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CD74P04233 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC21.78■■□□□ 1.08
CD74P04233 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC21.78■■□□□ 1.08
CD74P04233 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC21.77■■□□□ 1.08
CD74P04233 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CD74P04233 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
CD74P04233 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CD74P04233 AP004833.2-201ENST00000532228 1454 ntBASIC21.76■■□□□ 1.07
CD74P04233 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
CD74P04233 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CD74P04233 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CD74P04233 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CD74P04233 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CD74P04233 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC21.74■■□□□ 1.07
CD74P04233 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CD74P04233 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CD74P04233 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
CD74P04233 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CD74P04233 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CD74P04233 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CD74P04233 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CD74P04233 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CD74P04233 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
CD74P04233 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CD74P04233 LINC01003-201ENST00000564834 1764 ntBASIC21.71■■□□□ 1.07
CD74P04233 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC21.71■■□□□ 1.07
CD74P04233 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CD74P04233 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC21.71■■□□□ 1.07
CD74P04233 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
CD74P04233 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC21.7■■□□□ 1.07
CD74P04233 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CD74P04233 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC21.7■■□□□ 1.06
CD74P04233 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CD74P04233 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC21.7■■□□□ 1.06
CD74P04233 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC21.7■■□□□ 1.06
CD74P04233 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CD74P04233 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
CD74P04233 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CD74P04233 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CD74P04233 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
CD74P04233 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CD74P04233 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
CD74P04233 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CD74P04233 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CD74P04233 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC21.67■■□□□ 1.06
CD74P04233 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC21.67■■□□□ 1.06
CD74P04233 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC21.66■■□□□ 1.06
CD74P04233 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CD74P04233 AL449106.1-201ENST00000608517 1980 ntBASIC21.66■■□□□ 1.06
CD74P04233 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC21.65■■□□□ 1.06
CD74P04233 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CD74P04233 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.65■■□□□ 1.06
CD74P04233 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
CD74P04233 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
CD74P04233 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CD74P04233 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.06
CD74P04233 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC21.64■■□□□ 1.05
CD74P04233 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
CD74P04233 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CD74P04233 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CD74P04233 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
CD74P04233 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CD74P04233 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms