Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC30.01■■■□□ 2.39
PRPF40AO75400 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC30.01■■■□□ 2.39
PRPF40AO75400 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC30■■■□□ 2.39
PRPF40AO75400 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC30■■■□□ 2.39
PRPF40AO75400 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC30■■■□□ 2.39
PRPF40AO75400 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC30■■■□□ 2.39
PRPF40AO75400 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC30■■■□□ 2.39
PRPF40AO75400 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
PRPF40AO75400 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC30■■■□□ 2.39
PRPF40AO75400 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC30■■■□□ 2.39
PRPF40AO75400 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC29.99■■■□□ 2.39
PRPF40AO75400 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
PRPF40AO75400 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC29.98■■■□□ 2.39
PRPF40AO75400 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC29.97■■■□□ 2.39
PRPF40AO75400 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
PRPF40AO75400 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
PRPF40AO75400 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC29.97■■■□□ 2.39
PRPF40AO75400 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC29.97■■■□□ 2.39
PRPF40AO75400 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC29.96■■■□□ 2.39
PRPF40AO75400 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
PRPF40AO75400 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
PRPF40AO75400 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
PRPF40AO75400 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC29.96■■■□□ 2.39
PRPF40AO75400 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC29.96■■■□□ 2.39
PRPF40AO75400 RARRES2P7-201ENST00000567349 469 ntBASIC29.95■■■□□ 2.39
PRPF40AO75400 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
PRPF40AO75400 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
PRPF40AO75400 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC29.95■■■□□ 2.38
PRPF40AO75400 CREM-210ENST00000374721 2020 ntTSL 5 BASIC29.95■■■□□ 2.38
PRPF40AO75400 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC29.95■■■□□ 2.38
PRPF40AO75400 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
PRPF40AO75400 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC29.94■■■□□ 2.38
PRPF40AO75400 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC29.94■■■□□ 2.38
PRPF40AO75400 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
PRPF40AO75400 SHF-207ENST00000560540 2062 ntTSL 5 BASIC29.93■■■□□ 2.38
PRPF40AO75400 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC29.93■■■□□ 2.38
PRPF40AO75400 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC29.93■■■□□ 2.38
PRPF40AO75400 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC29.93■■■□□ 2.38
PRPF40AO75400 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC29.92■■■□□ 2.38
PRPF40AO75400 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
PRPF40AO75400 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
PRPF40AO75400 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC29.9■■■□□ 2.38
PRPF40AO75400 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
PRPF40AO75400 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC29.9■■■□□ 2.38
PRPF40AO75400 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
PRPF40AO75400 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
PRPF40AO75400 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC29.89■■■□□ 2.38
PRPF40AO75400 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC29.89■■■□□ 2.38
PRPF40AO75400 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC29.88■■■□□ 2.37
PRPF40AO75400 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC29.88■■■□□ 2.37
PRPF40AO75400 BX255925.1-201ENST00000566954 1854 ntBASIC29.87■■■□□ 2.37
PRPF40AO75400 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
PRPF40AO75400 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC29.87■■■□□ 2.37
PRPF40AO75400 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC29.86■■■□□ 2.37
PRPF40AO75400 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC29.86■■■□□ 2.37
PRPF40AO75400 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
PRPF40AO75400 AC135731.1-201ENST00000569415 2548 ntBASIC29.83■■■□□ 2.37
PRPF40AO75400 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
PRPF40AO75400 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
PRPF40AO75400 AL133380.1-201ENST00000506013 324 ntBASIC29.83■■■□□ 2.37
PRPF40AO75400 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC29.82■■■□□ 2.36
PRPF40AO75400 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC29.82■■■□□ 2.36
PRPF40AO75400 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
PRPF40AO75400 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC29.81■■■□□ 2.36
PRPF40AO75400 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
PRPF40AO75400 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC29.8■■■□□ 2.36
PRPF40AO75400 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC29.8■■■□□ 2.36
PRPF40AO75400 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC29.79■■■□□ 2.36
PRPF40AO75400 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC29.79■■■□□ 2.36
PRPF40AO75400 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC29.79■■■□□ 2.36
PRPF40AO75400 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC29.78■■■□□ 2.36
PRPF40AO75400 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC29.77■■■□□ 2.36
PRPF40AO75400 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC29.77■■■□□ 2.36
PRPF40AO75400 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
PRPF40AO75400 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC29.77■■■□□ 2.36
PRPF40AO75400 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
PRPF40AO75400 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC29.76■■■□□ 2.35
PRPF40AO75400 SETD8P1-201ENST00000623146 1180 ntBASIC29.76■■■□□ 2.35
PRPF40AO75400 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
PRPF40AO75400 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC29.76■■■□□ 2.35
PRPF40AO75400 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC29.75■■■□□ 2.35
PRPF40AO75400 PROC-203ENST00000409048 1586 ntTSL 5 BASIC29.75■■■□□ 2.35
PRPF40AO75400 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC29.75■■■□□ 2.35
PRPF40AO75400 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC29.75■■■□□ 2.35
PRPF40AO75400 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC29.74■■■□□ 2.35
PRPF40AO75400 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC29.74■■■□□ 2.35
PRPF40AO75400 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
PRPF40AO75400 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC29.73■■■□□ 2.35
PRPF40AO75400 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC29.73■■■□□ 2.35
PRPF40AO75400 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
PRPF40AO75400 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
PRPF40AO75400 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC29.72■■■□□ 2.35
PRPF40AO75400 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
PRPF40AO75400 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC29.72■■■□□ 2.35
PRPF40AO75400 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC29.71■■■□□ 2.35
PRPF40AO75400 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
PRPF40AO75400 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
PRPF40AO75400 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC29.71■■■□□ 2.35
PRPF40AO75400 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC29.71■■■□□ 2.35
PRPF40AO75400 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC29.71■■■□□ 2.35
Retrieved 100 of 98,524 protein–RNA pairs in 12.5 ms