Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 MKRN4P-201ENST00000444706 1521 ntBASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 AC004448.1-201ENST00000458332 883 ntBASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 CEP83-AS1-201ENST00000623122 2482 ntBASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN3Q8NCR9 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN3Q8NCR9 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN3Q8NCR9 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
CLRN3Q8NCR9 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN3Q8NCR9 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC15.97■□□□□ 0.15
CLRN3Q8NCR9 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC15.97■□□□□ 0.15
CLRN3Q8NCR9 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN3Q8NCR9 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC15.97■□□□□ 0.15
CLRN3Q8NCR9 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN3Q8NCR9 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN3Q8NCR9 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC15.97■□□□□ 0.15
CLRN3Q8NCR9 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN3Q8NCR9 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN3Q8NCR9 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
CLRN3Q8NCR9 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN3Q8NCR9 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN3Q8NCR9 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN3Q8NCR9 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
CLRN3Q8NCR9 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC15.97■□□□□ 0.15
CLRN3Q8NCR9 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC15.97■□□□□ 0.15
CLRN3Q8NCR9 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN3Q8NCR9 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN3Q8NCR9 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN3Q8NCR9 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC15.96■□□□□ 0.15
CLRN3Q8NCR9 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLRN3Q8NCR9 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLRN3Q8NCR9 AL513477.1-201ENST00000602865 2407 ntBASIC15.96■□□□□ 0.15
CLRN3Q8NCR9 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLRN3Q8NCR9 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLRN3Q8NCR9 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLRN3Q8NCR9 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC15.96■□□□□ 0.15
CLRN3Q8NCR9 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CLRN3Q8NCR9 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC15.96■□□□□ 0.15
CLRN3Q8NCR9 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC15.96■□□□□ 0.15
CLRN3Q8NCR9 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLRN3Q8NCR9 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC15.96■□□□□ 0.15
CLRN3Q8NCR9 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
CLRN3Q8NCR9 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
CLRN3Q8NCR9 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLRN3Q8NCR9 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLRN3Q8NCR9 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLRN3Q8NCR9 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC15.96■□□□□ 0.15
CLRN3Q8NCR9 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLRN3Q8NCR9 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLRN3Q8NCR9 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CLRN3Q8NCR9 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLRN3Q8NCR9 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLRN3Q8NCR9 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.14
CLRN3Q8NCR9 LINC01465-201ENST00000408887 1940 ntBASIC15.96■□□□□ 0.14
CLRN3Q8NCR9 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.14
CLRN3Q8NCR9 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
CLRN3Q8NCR9 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
CLRN3Q8NCR9 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC15.95■□□□□ 0.14
CLRN3Q8NCR9 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CLRN3Q8NCR9 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CLRN3Q8NCR9 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms