Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.684e-8■■□□□ 12.3
U2AF1Q01081 MAZ-204ENST00000561855 672 ntTSL 518.8■□□□□ 0.64e-8■■□□□ 12.3
U2AF1Q01081 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC18.21■□□□□ 0.513e-10■■□□□ 12.3
U2AF1Q01081 MAZ-206ENST00000562557 475 ntTSL 317.26■□□□□ 0.354e-8■■□□□ 12.3
U2AF1Q01081 YTHDC1-201ENST00000344157 6232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.024e-8■■□□□ 12.3
U2AF1Q01081 ATP5A1-212ENST00000590324 807 ntTSL 513.12□□□□□ -0.319e-20■■□□□ 12.3
U2AF1Q01081 ATP5A1-209ENST00000589611 995 ntTSL 212.82□□□□□ -0.369e-20■■□□□ 12.3
U2AF1Q01081 KPNA6-201ENST00000373625 7378 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.833e-10■■□□□ 12.3
U2AF1Q01081 KPNA6-204ENST00000471599 3941 ntTSL 29.55□□□□□ -0.883e-10■■□□□ 12.3
U2AF1Q01081 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.94e-8■■□□□ 12.3
U2AF1Q01081 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC7.5□□□□□ -1.214e-8■■□□□ 12.3
U2AF1Q01081 KPNB1-201ENST00000290158 6139 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.382e-6■■□□□ 12.2
U2AF1Q01081 HNRNPH1-224ENST00000514731 1371 ntTSL 218.57■□□□□ 0.566e-9■■□□□ 12.2
U2AF1Q01081 HNRNPH1-218ENST00000510678 1996 ntTSL 518.18■□□□□ 0.55e-9■■□□□ 12.2
U2AF1Q01081 HNRNPH1-223ENST00000514332 2444 ntTSL 218.03■□□□□ 0.486e-9■■□□□ 12.2
U2AF1Q01081 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC17.93■□□□□ 0.465e-9■■□□□ 12.2
U2AF1Q01081 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.426e-9■■□□□ 12.2
U2AF1Q01081 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.356e-9■■□□□ 12.2
U2AF1Q01081 HNRNPH1-216ENST00000510411 2105 ntTSL 5 BASIC16.75■□□□□ 0.275e-9■■□□□ 12.2
U2AF1Q01081 HNRNPH1-202ENST00000356731 3667 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.146e-9■■□□□ 12.2
U2AF1Q01081 GFPT1-204ENST00000494201 625 ntTSL 59.27□□□□□ -0.933e-8■■□□□ 12.2
U2AF1Q01081 TET3-201ENST00000305799 5174 ntTSL 5 BASIC17.25■□□□□ 0.357e-9■■□□□ 12.2
U2AF1Q01081 TET3-202ENST00000409262 11388 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.597e-9■■□□□ 12.2
U2AF1Q01081 SRRM2-220ENST00000574593 1440 ntTSL 321.12■□□□□ 0.972e-8■■□□□ 12.2
U2AF1Q01081 DCAF8-208ENST00000461888 2277 ntTSL 522■■□□□ 1.113e-10■■□□□ 12.2
U2AF1Q01081 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.513e-10■■□□□ 12.2
U2AF1Q01081 AL139011.2-201ENST00000556710 2635 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.233e-10■■□□□ 12.2
U2AF1Q01081 DCAF8-202ENST00000368073 4106 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.133e-10■■□□□ 12.2
U2AF1Q01081 DCAF8-209ENST00000466253 1078 ntTSL 512.87□□□□□ -0.353e-10■■□□□ 12.2
U2AF1Q01081 DCAF8-203ENST00000368074 3824 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.593e-10■■□□□ 12.2
U2AF1Q01081 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.667e-7■■□□□ 12.2
U2AF1Q01081 TXNRD1-214ENST00000526691 3974 ntTSL 1 (best) BASIC17.58■□□□□ 0.45e-7■■□□□ 12.2
U2AF1Q01081 TXNRD1-202ENST00000388854 4277 ntTSL 5 BASIC16.41■□□□□ 0.225e-7■■□□□ 12.2
U2AF1Q01081 TXNRD1-201ENST00000354940 4082 ntAPPRIS ALT1 TSL 5 BASIC15.37■□□□□ 0.055e-7■■□□□ 12.2
U2AF1Q01081 TXNRD1-217ENST00000527688 3858 ntTSL 213.45□□□□□ -0.265e-7■■□□□ 12.2
U2AF1Q01081 TXNRD1-204ENST00000429002 3855 ntTSL 5 BASIC12.31□□□□□ -0.445e-7■■□□□ 12.2
U2AF1Q01081 TXNRD1-208ENST00000525566 3836 ntTSL 1 (best) BASIC11.55□□□□□ -0.565e-7■■□□□ 12.2
U2AF1Q01081 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC8.67□□□□□ -1.025e-7■■□□□ 12.2
U2AF1Q01081 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC8.49□□□□□ -1.055e-7■■□□□ 12.2
U2AF1Q01081 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC8.44□□□□□ -1.065e-7■■□□□ 12.2
U2AF1Q01081 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.48e-10■■□□□ 12.2
U2AF1Q01081 SLCO4A1-207ENST00000495889 543 ntTSL 322.51■■□□□ 1.198e-10■■□□□ 12.2
U2AF1Q01081 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.158e-10■■□□□ 12.2
U2AF1Q01081 SLCO4A1-208ENST00000497209 3092 ntTSL 1 (best)18.8■□□□□ 0.68e-10■■□□□ 12.2
U2AF1Q01081 SLCO4A1-205ENST00000466961 819 ntTSL 318.05■□□□□ 0.488e-10■■□□□ 12.2
U2AF1Q01081 SLCO4A1-203ENST00000451793 856 ntTSL 217.79■□□□□ 0.448e-10■■□□□ 12.2
U2AF1Q01081 SLCO4A1-206ENST00000470412 986 ntTSL 514.78□□□□□ -0.048e-10■■□□□ 12.2
U2AF1Q01081 TRAPPC6B-202ENST00000347691 3229 ntTSL 1 (best) BASIC12.77□□□□□ -0.377e-8■■□□□ 12.2
U2AF1Q01081 TRAPPC6B-203ENST00000469361 4533 ntTSL 210.6□□□□□ -0.717e-8■■□□□ 12.2
U2AF1Q01081 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.297e-8■■□□□ 12.2
U2AF1Q01081 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC5.45□□□□□ -1.544e-7■■□□□ 12.2
U2AF1Q01081 DCUN1D1-206ENST00000492563 659 ntTSL 55.38□□□□□ -1.554e-7■■□□□ 12.2
U2AF1Q01081 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC5.1□□□□□ -1.594e-7■■□□□ 12.2
U2AF1Q01081 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.724e-7■■□□□ 12.2
U2AF1Q01081 SLC17A9-205ENST00000483113 1624 ntTSL 318.92■□□□□ 0.626e-7■■□□□ 12.2
U2AF1Q01081 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC27.3■■□□□ 1.961e-6■■□□□ 12.2
U2AF1Q01081 GOLGA4-209ENST00000450863 1617 ntTSL 526.17■■□□□ 1.781e-6■■□□□ 12.2
U2AF1Q01081 GOLGA4-204ENST00000429018 2036 ntTSL 1 (best)20.94■□□□□ 0.941e-6■■□□□ 12.2
U2AF1Q01081 GOLGA4-206ENST00000435830 4152 ntTSL 1 (best)13.17□□□□□ -0.31e-6■■□□□ 12.2
U2AF1Q01081 ABCC10-205ENST00000437104 733 ntTSL 325.88■■□□□ 1.732e-6■■□□□ 12.1
U2AF1Q01081 CSNK1D-225ENST00000584913 295 ntTSL 222.38■■□□□ 1.172e-6■■□□□ 12.1
U2AF1Q01081 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.642e-6■■□□□ 12.1
U2AF1Q01081 CSNK1D-224ENST00000584672 401 ntTSL 318.84■□□□□ 0.612e-6■■□□□ 12.1
U2AF1Q01081 CSNK1D-208ENST00000578501 1124 ntTSL 218.24■□□□□ 0.512e-6■■□□□ 12.1
U2AF1Q01081 TXNRD1-221ENST00000529784 607 ntTSL 418■□□□□ 0.472e-6■■□□□ 12.1
U2AF1Q01081 CSNK1D-220ENST00000581737 631 ntTSL 217.91■□□□□ 0.462e-6■■□□□ 12.1
U2AF1Q01081 ABCC10-204ENST00000372530 5033 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.42e-6■■□□□ 12.1
U2AF1Q01081 CSNK1D-206ENST00000577578 928 ntTSL 216.66■□□□□ 0.262e-6■■□□□ 12.1
U2AF1Q01081 ABCC10-207ENST00000463024 4542 ntTSL 216.24■□□□□ 0.192e-6■■□□□ 12.1
U2AF1Q01081 TXNRD1-223ENST00000531691 728 ntTSL 214.84□□□□□ -0.032e-6■■□□□ 12.1
U2AF1Q01081 TXNRD1-216ENST00000527335 786 ntTSL 514.81□□□□□ -0.042e-6■■□□□ 12.1
U2AF1Q01081 TXNRD1-211ENST00000526266 577 ntTSL 413.45□□□□□ -0.262e-6■■□□□ 12.1
U2AF1Q01081 TXNRD1-222ENST00000531689 554 ntTSL 412.13□□□□□ -0.472e-6■■□□□ 12.1
U2AF1Q01081 TXNRD1-213ENST00000526580 400 ntTSL 1 (best)11.78□□□□□ -0.522e-6■■□□□ 12.1
U2AF1Q01081 TXNRD1-218ENST00000528079 629 ntTSL 411.53□□□□□ -0.562e-6■■□□□ 12.1
U2AF1Q01081 MBNL2-205ENST00000449284 581 ntTSL 26.35□□□□□ -1.392e-6■■□□□ 12.1
U2AF1Q01081 ZBED5-204ENST00000526020 1512 ntTSL 1 (best)21.14■□□□□ 0.973e-6■■□□□ 12.1
U2AF1Q01081 ZBED5-206ENST00000528289 586 ntTSL 413.3□□□□□ -0.283e-6■■□□□ 12.1
U2AF1Q01081 ZBED5-209ENST00000533925 533 ntTSL 46.27□□□□□ -1.413e-6■■□□□ 12.1
U2AF1Q01081 ZBED5-207ENST00000530570 544 ntTSL 24.07□□□□□ -1.763e-6■■□□□ 12.1
U2AF1Q01081 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.843e-6■■□□□ 12.1
U2AF1Q01081 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.983e-6■■□□□ 12.1
U2AF1Q01081 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.097e-7■■□□□ 12.1
U2AF1Q01081 KNTC1-214ENST00000545065 782 ntTSL 510.83□□□□□ -0.683e-7■■□□□ 12.1
U2AF1Q01081 KNTC1-203ENST00000423927 1250 ntTSL 410.68□□□□□ -0.73e-7■■□□□ 12.1
U2AF1Q01081 KNTC1-207ENST00000535186 553 ntTSL 43.56□□□□□ -1.843e-7■■□□□ 12.1
U2AF1Q01081 SRRM2-225ENST00000576076 914 nt22.44■■□□□ 1.182e-10■■□□□ 12.1
U2AF1Q01081 TNKS1BP1-205ENST00000530920 957 ntTSL 328.97■■■□□ 2.234e-6■■□□□ 12.1
U2AF1Q01081 PDLIM7-204ENST00000393546 671 ntTSL 325.41■■□□□ 1.664e-6■■□□□ 12.1
U2AF1Q01081 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC24.45■■□□□ 1.54e-6■■□□□ 12.1
U2AF1Q01081 PDLIM7-209ENST00000503346 669 ntTSL 224.39■■□□□ 1.494e-6■■□□□ 12.1
U2AF1Q01081 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC23.94■■□□□ 1.424e-6■■□□□ 12.1
U2AF1Q01081 PDLIM7-208ENST00000493815 1686 ntTSL 1 (best)23.94■■□□□ 1.424e-6■■□□□ 12.1
U2AF1Q01081 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.424e-6■■□□□ 12.1
U2AF1Q01081 PDLIM7-207ENST00000486828 1904 ntTSL 1 (best)23.32■■□□□ 1.324e-6■■□□□ 12.1
U2AF1Q01081 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC22.45■■□□□ 1.184e-6■■□□□ 12.1
U2AF1Q01081 PDLIM7-215ENST00000506161 759 ntTSL 322.45■■□□□ 1.184e-6■■□□□ 12.1
U2AF1Q01081 PDLIM7-213ENST00000505074 931 ntTSL 321.35■■□□□ 1.014e-6■■□□□ 12.1
U2AF1Q01081 PDLIM7-210ENST00000503827 451 ntTSL 521.03■□□□□ 0.964e-6■■□□□ 12.1
U2AF1Q01081 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.874e-6■■□□□ 12.1
Retrieved 100 of 10,096 protein–RNA pairs in 62.7 ms