RNA–Protein interactions for RNA: ENST00000503346.1

PDLIM7-209, Transcript of PDZ and LIM domain 7, humanhuman

TSL 2

Gene PDLIM7, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-209ENST00000503346 NISCHQ9Y2I1 1504 aa44.23■■■■■ 4.67
PDLIM7-209ENST00000503346 CCDC180Q9P1Z9 1646 aa39.24■■■■□ 3.87
PDLIM7-209ENST00000503346 ABCC9O60706 1549 aa38.37■■■■□ 3.73
PDLIM7-209ENST00000503346 NACADO15069 1562 aa36.93■■■■□ 3.5
PDLIM7-209ENST00000503346 RB1CC1Q8TDY2 1594 aa36.93■■■■□ 3.5
PDLIM7-209ENST00000503346 DCAF8L2P0C7V8 631 aa36.88■■■■□ 3.49
PDLIM7-209ENST00000503346 ZCCHC6Q5VYS8 1495 aaKnown RBP36.87■■■■□ 3.49
PDLIM7-209ENST00000503346 MYO15BQ96JP2 1530 aa36.78■■■■□ 3.48
PDLIM7-209ENST00000503346 DCAF1Q9Y4B6 1507 aa36.63■■■■□ 3.45
PDLIM7-209ENST00000503346 UNC13AQ9UPW8 1703 aa35.98■■■■□ 3.35
PDLIM7-209ENST00000503346 PABPN1Q86U42 306 aaKnown RBP eCLIP35.88■■■■□ 3.33
PDLIM7-209ENST00000503346 BICRAQ9NZM4 1560 aa35.82■■■■□ 3.32
PDLIM7-209ENST00000503346 SCRIBQ14160 1630 aa35.8■■■■□ 3.32
PDLIM7-209ENST00000503346 SHROOM4Q9ULL8 1493 aa35.51■■■■□ 3.28
PDLIM7-209ENST00000503346 DNAJC5BQ9UF47 199 aa35.2■■■■□ 3.23
PDLIM7-209ENST00000503346 EIF4G1Q04637 1599 aaKnown RBP34.87■■■■□ 3.17
PDLIM7-209ENST00000503346 CC2D2AQ9P2K1 1620 aa34.69■■■■□ 3.14
PDLIM7-209ENST00000503346 CECR2Q9BXF3 1484 aa34.49■■■■□ 3.11
PDLIM7-209ENST00000503346 SMARCA4P51532 1647 aa34.27■■■■□ 3.08
PDLIM7-209ENST00000503346 BAZ1AQ9NRL2 1556 aaPredicted RBP34.27■■■■□ 3.08
PDLIM7-209ENST00000503346 NCAPD3P42695 1498 aa34.12■■■■□ 3.05
PDLIM7-209ENST00000503346 ATAD2BQ9ULI0 1458 aa34.12■■■■□ 3.05
PDLIM7-209ENST00000503346 MROH2BQ7Z745 1585 aa34.07■■■■□ 3.05
PDLIM7-209ENST00000503346 SMARCA2P51531 1590 aa34.06■■■■□ 3.04
PDLIM7-209ENST00000503346 PEG3Q9GZU2 1588 aa33.98■■■■□ 3.03
PDLIM7-209ENST00000503346 HMGXB3Q12766 1538 aa33.91■■■■□ 3.02
PDLIM7-209ENST00000503346 BAZ1BQ9UIG0 1483 aaKnown RBP33.82■■■■□ 3
PDLIM7-209ENST00000503346 RSF1Q96T23 1441 aaPredicted RBP33.73■■■□□ 2.99
PDLIM7-209ENST00000503346 WIZO95785 1651 aa33.65■■■□□ 2.98
PDLIM7-209ENST00000503346 TOP2AP11388 1531 aaKnown RBP33.36■■■□□ 2.93
PDLIM7-209ENST00000503346 NESP48681 1621 aa33.21■■■□□ 2.91
PDLIM7-209ENST00000503346 LAMC3Q9Y6N6 1575 aa33.15■■■□□ 2.9
PDLIM7-209ENST00000503346 CADPSQ9ULU8 1353 aa33.11■■■□□ 2.89
PDLIM7-209ENST00000503346 ERCC6Q03468 1493 aa33.06■■■□□ 2.88
PDLIM7-209ENST00000503346 CCDC88BA6NC98 1476 aa32.97■■■□□ 2.87
PDLIM7-209ENST00000503346 PDS5BQ9NTI5 1447 aa32.96■■■□□ 2.87
PDLIM7-209ENST00000503346 CFTRP13569 1480 aa32.93■■■□□ 2.86
PDLIM7-209ENST00000503346 SUPT5HO00267 1087 aaKnown RBP32.86■■■□□ 2.85
PDLIM7-209ENST00000503346 KIF21AQ7Z4S6 1674 aa32.75■■■□□ 2.83
PDLIM7-209ENST00000503346 CUX2O14529 1486 aa32.74■■■□□ 2.83
PDLIM7-209ENST00000503346 FANCD2Q9BXW9 1451 aa32.7■■■□□ 2.83
PDLIM7-209ENST00000503346 THOC2Q8NI27 1593 aaKnown RBP32.69■■■□□ 2.82
PDLIM7-209ENST00000503346 CEP164Q9UPV0 1460 aa32.65■■■□□ 2.82
PDLIM7-209ENST00000503346 MRC2Q9UBG0 1479 aa32.61■■■□□ 2.81
PDLIM7-209ENST00000503346 PRDM2Q13029 1718 aa32.53■■■□□ 2.8
PDLIM7-209ENST00000503346 WDR62O43379 1518 aa32.49■■■□□ 2.79
PDLIM7-209ENST00000503346 URB2Q14146 1524 aaKnown RBP32.37■■■□□ 2.77
PDLIM7-209ENST00000503346 ABCC8Q09428 1581 aa32.2■■■□□ 2.75
PDLIM7-209ENST00000503346 TOPBP1Q92547 1522 aa32.18■■■□□ 2.74
PDLIM7-209ENST00000503346 DNMBPQ6XZF7 1577 aa32.14■■■□□ 2.74
PDLIM7-209ENST00000503346 IFT140Q96RY7 1462 aa31.99■■■□□ 2.71
PDLIM7-209ENST00000503346 CUX1P39880 1505 aa31.96■■■□□ 2.71
PDLIM7-209ENST00000503346 POLA1P09884 1462 aaPredicted RBP31.92■■■□□ 2.7
PDLIM7-209ENST00000503346 FGD5Q6ZNL6 1462 aa31.84■■■□□ 2.69
PDLIM7-209ENST00000503346 ZNF608Q9ULD9 1512 aaPredicted RBP31.81■■■□□ 2.68
PDLIM7-209ENST00000503346 TARBP1Q13395 1621 aaKnown RBP31.81■■■□□ 2.68
PDLIM7-209ENST00000503346 SOGA1O94964 1423 aa31.8■■■□□ 2.68
PDLIM7-209ENST00000503346 WRNQ14191 1432 aaPredicted RBP eCLIP31.79■■■□□ 2.68
PDLIM7-209ENST00000503346 RAD54L2Q9Y4B4 1467 aa31.78■■■□□ 2.68
PDLIM7-209ENST00000503346 TOP2BQ02880 1626 aa31.68■■■□□ 2.66
PDLIM7-209ENST00000503346 DNAJC5Q9H3Z4 198 aa31.68■■■□□ 2.66
PDLIM7-209ENST00000503346 SYNJ1O43426 1573 aa31.67■■■□□ 2.66
PDLIM7-209ENST00000503346 BIVM-ERCC5R4GMW8 1640 aa31.66■■■□□ 2.66
PDLIM7-209ENST00000503346 EIF4G3O43432 1585 aaKnown RBP31.65■■■□□ 2.66
PDLIM7-209ENST00000503346 AQRO60306 1485 aaKnown RBP eCLIP31.65■■■□□ 2.664e-10■■■■□ 26.1
PDLIM7-209ENST00000503346 TDRD9Q8NDG6 1382 aaKnown RBP31.6■■■□□ 2.65
PDLIM7-209ENST00000503346 WDR97A6NE52 1622 aa31.59■■■□□ 2.65
PDLIM7-209ENST00000503346 ABCA10Q8WWZ4 1543 aa31.56■■■□□ 2.64
PDLIM7-209ENST00000503346 GRIN2BQ13224 1484 aa31.42■■■□□ 2.62
PDLIM7-209ENST00000503346 GAPVD1Q14C86 1478 aa31.42■■■□□ 2.62
PDLIM7-209ENST00000503346 ABCA5Q8WWZ7 1642 aa31.39■■■□□ 2.62
PDLIM7-209ENST00000503346 OSCARQ8IYS5 282 aa31.39■■■□□ 2.62
PDLIM7-209ENST00000503346 SNAPC4Q5SXM2 1469 aa31.36■■■□□ 2.61
PDLIM7-209ENST00000503346 MAGI1Q96QZ7 1491 aaPredicted RBP31.33■■■□□ 2.61
PDLIM7-209ENST00000503346 PBRM1Q86U86 1689 aa31.26■■■□□ 2.6
PDLIM7-209ENST00000503346 FBLN2P98095 1184 aa31.23■■■□□ 2.59
PDLIM7-209ENST00000503346 SYNJ2O15056 1496 aa31.21■■■□□ 2.59
PDLIM7-209ENST00000503346 CHD1O14646 1710 aa31.19■■■□□ 2.58
PDLIM7-209ENST00000503346 CHMP7Q8WUX9 453 aaPredicted RBP31.19■■■□□ 2.58
PDLIM7-209ENST00000503346 ERICH3Q5RHP9 1530 aa31.17■■■□□ 2.58
PDLIM7-209ENST00000503346 KIF27Q86VH2 1401 aa31.14■■■□□ 2.58
PDLIM7-209ENST00000503346 ADAMTS12P58397 1594 aa31.09■■■□□ 2.57
PDLIM7-209ENST00000503346 FHAD1B1AJZ9 1412 aa31.08■■■□□ 2.57
PDLIM7-209ENST00000503346 TRIM41Q8WV44 630 aa31.06■■■□□ 2.56
PDLIM7-209ENST00000503346 IGF1RP08069 1367 aa31.02■■■□□ 2.56
PDLIM7-209ENST00000503346 GRIN2AQ12879 1464 aa31.01■■■□□ 2.56
PDLIM7-209ENST00000503346 CLASP1Q7Z460 1538 aa30.95■■■□□ 2.55
PDLIM7-209ENST00000503346 NUP160Q12769 1436 aa30.9■■■□□ 2.54
PDLIM7-209ENST00000503346 CUL7Q14999 1698 aa30.85■■■□□ 2.53
PDLIM7-209ENST00000503346 ARHGEF11O15085 1522 aa30.85■■■□□ 2.53
PDLIM7-209ENST00000503346 RUSC2Q8N2Y8 1516 aa30.83■■■□□ 2.53
PDLIM7-209ENST00000503346 CEP170Q5SW79 1584 aa30.83■■■□□ 2.53
PDLIM7-209ENST00000503346 CARMIL1Q5VZK9 1371 aa30.82■■■□□ 2.52
PDLIM7-209ENST00000503346 RIMBP3CA6NJZ7 1639 aa30.82■■■□□ 2.52
PDLIM7-209ENST00000503346 RIMBP3BA6NNM3 1639 aa30.82■■■□□ 2.52
PDLIM7-209ENST00000503346 RIMBP3Q9UFD9 1639 aa30.82■■■□□ 2.52
PDLIM7-209ENST00000503346 CHIC1Q5VXU3 224 aa30.74■■■□□ 2.51
PDLIM7-209ENST00000503346 RAPGEF2Q9Y4G8 1499 aa30.63■■■□□ 2.49
PDLIM7-209ENST00000503346 ARAP1Q96P48 1450 aa30.63■■■□□ 2.49
PDLIM7-209ENST00000503346 KIAA0586Q9BVV6 1533 aa30.61■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms