RNA–Protein interactions for RNA: ENST00000493815.5

PDLIM7-208, Transcript of PDZ and LIM domain 7, humanhuman

TSL 1 (best)

Gene PDLIM7, Length 1,686 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-208ENST00000493815 NISCHQ9Y2I1 1504 aa42.67■■■■■ 4.42
PDLIM7-208ENST00000493815 CCDC180Q9P1Z9 1646 aa37.66■■■■□ 3.62
PDLIM7-208ENST00000493815 ABCC9O60706 1549 aa36.69■■■■□ 3.46
PDLIM7-208ENST00000493815 DCAF8L2P0C7V8 631 aa35.7■■■■□ 3.31
PDLIM7-208ENST00000493815 ZCCHC6Q5VYS8 1495 aaKnown RBP35.62■■■■□ 3.29
PDLIM7-208ENST00000493815 NACADO15069 1562 aa35.35■■■■□ 3.25
PDLIM7-208ENST00000493815 RB1CC1Q8TDY2 1594 aa35.32■■■■□ 3.24
PDLIM7-208ENST00000493815 DCAF1Q9Y4B6 1507 aa35.23■■■■□ 3.23
PDLIM7-208ENST00000493815 MYO15BQ96JP2 1530 aa35.21■■■■□ 3.23
PDLIM7-208ENST00000493815 SCRIBQ14160 1630 aa34.56■■■■□ 3.12
PDLIM7-208ENST00000493815 UNC13AQ9UPW8 1703 aa34.55■■■■□ 3.12
PDLIM7-208ENST00000493815 PABPN1Q86U42 306 aaKnown RBP eCLIP34.42■■■■□ 3.13e-7■■■■■ 28.5
PDLIM7-208ENST00000493815 BICRAQ9NZM4 1560 aa34.29■■■■□ 3.08
PDLIM7-208ENST00000493815 SHROOM4Q9ULL8 1493 aa34.14■■■■□ 3.06
PDLIM7-208ENST00000493815 DNAJC5BQ9UF47 199 aa33.39■■■□□ 2.94
PDLIM7-208ENST00000493815 EIF4G1Q04637 1599 aaKnown RBP33.35■■■□□ 2.93
PDLIM7-208ENST00000493815 CECR2Q9BXF3 1484 aa33.29■■■□□ 2.92
PDLIM7-208ENST00000493815 CC2D2AQ9P2K1 1620 aa33.14■■■□□ 2.9
PDLIM7-208ENST00000493815 SMARCA4P51532 1647 aa33.02■■■□□ 2.88
PDLIM7-208ENST00000493815 BAZ1AQ9NRL2 1556 aaPredicted RBP33.02■■■□□ 2.88
PDLIM7-208ENST00000493815 MROH2BQ7Z745 1585 aa32.95■■■□□ 2.87
PDLIM7-208ENST00000493815 ATAD2BQ9ULI0 1458 aa32.77■■■□□ 2.84
PDLIM7-208ENST00000493815 RSF1Q96T23 1441 aaPredicted RBP32.71■■■□□ 2.83
PDLIM7-208ENST00000493815 SMARCA2P51531 1590 aa32.69■■■□□ 2.82
PDLIM7-208ENST00000493815 NCAPD3P42695 1498 aa32.66■■■□□ 2.82
PDLIM7-208ENST00000493815 PEG3Q9GZU2 1588 aa32.63■■■□□ 2.81
PDLIM7-208ENST00000493815 WIZO95785 1651 aa32.61■■■□□ 2.81
PDLIM7-208ENST00000493815 BAZ1BQ9UIG0 1483 aaKnown RBP32.52■■■□□ 2.8
PDLIM7-208ENST00000493815 HMGXB3Q12766 1538 aa32.5■■■□□ 2.79
PDLIM7-208ENST00000493815 SUPT5HO00267 1087 aaKnown RBP32.31■■■□□ 2.76
PDLIM7-208ENST00000493815 TOP2AP11388 1531 aaKnown RBP32.22■■■□□ 2.75
PDLIM7-208ENST00000493815 CCDC88BA6NC98 1476 aa31.91■■■□□ 2.7
PDLIM7-208ENST00000493815 NESP48681 1621 aa31.87■■■□□ 2.69
PDLIM7-208ENST00000493815 CADPSQ9ULU8 1353 aa31.77■■■□□ 2.68
PDLIM7-208ENST00000493815 LAMC3Q9Y6N6 1575 aa31.7■■■□□ 2.67
PDLIM7-208ENST00000493815 CFTRP13569 1480 aa31.64■■■□□ 2.65
PDLIM7-208ENST00000493815 ERCC6Q03468 1493 aa31.55■■■□□ 2.64
PDLIM7-208ENST00000493815 PDS5BQ9NTI5 1447 aa31.52■■■□□ 2.64
PDLIM7-208ENST00000493815 KIF21AQ7Z4S6 1674 aa31.42■■■□□ 2.62
PDLIM7-208ENST00000493815 FANCD2Q9BXW9 1451 aa31.41■■■□□ 2.62
PDLIM7-208ENST00000493815 PRDM2Q13029 1718 aa31.33■■■□□ 2.61
PDLIM7-208ENST00000493815 CEP164Q9UPV0 1460 aa31.31■■■□□ 2.6
PDLIM7-208ENST00000493815 THOC2Q8NI27 1593 aaKnown RBP31.2■■■□□ 2.58
PDLIM7-208ENST00000493815 MRC2Q9UBG0 1479 aa31.18■■■□□ 2.58
PDLIM7-208ENST00000493815 URB2Q14146 1524 aaKnown RBP31.09■■■□□ 2.57
PDLIM7-208ENST00000493815 WDR62O43379 1518 aa31.04■■■□□ 2.56
PDLIM7-208ENST00000493815 CUX2O14529 1486 aa30.98■■■□□ 2.55
PDLIM7-208ENST00000493815 TOPBP1Q92547 1522 aa30.94■■■□□ 2.54
PDLIM7-208ENST00000493815 ABCC8Q09428 1581 aa30.9■■■□□ 2.54
PDLIM7-208ENST00000493815 DNMBPQ6XZF7 1577 aa30.9■■■□□ 2.54
PDLIM7-208ENST00000493815 CUX1P39880 1505 aa30.88■■■□□ 2.53
PDLIM7-208ENST00000493815 WRNQ14191 1432 aaPredicted RBP eCLIP30.81■■■□□ 2.52
PDLIM7-208ENST00000493815 SYNJ1O43426 1573 aa30.73■■■□□ 2.51
PDLIM7-208ENST00000493815 POLA1P09884 1462 aaPredicted RBP30.72■■■□□ 2.51
PDLIM7-208ENST00000493815 FGD5Q6ZNL6 1462 aa30.71■■■□□ 2.51
PDLIM7-208ENST00000493815 TOP2BQ02880 1626 aa30.66■■■□□ 2.5
PDLIM7-208ENST00000493815 RAD54L2Q9Y4B4 1467 aa30.64■■■□□ 2.5
PDLIM7-208ENST00000493815 BIVM-ERCC5R4GMW8 1640 aa30.63■■■□□ 2.49
PDLIM7-208ENST00000493815 IFT140Q96RY7 1462 aa30.62■■■□□ 2.49
PDLIM7-208ENST00000493815 SOGA1O94964 1423 aa30.61■■■□□ 2.49
PDLIM7-208ENST00000493815 TARBP1Q13395 1621 aaKnown RBP30.56■■■□□ 2.48
PDLIM7-208ENST00000493815 ZNF608Q9ULD9 1512 aaPredicted RBP30.55■■■□□ 2.48
PDLIM7-208ENST00000493815 TDRD9Q8NDG6 1382 aaKnown RBP30.45■■■□□ 2.47
PDLIM7-208ENST00000493815 AQRO60306 1485 aaKnown RBP eCLIP30.44■■■□□ 2.466e-8■■■■■ 29.2
PDLIM7-208ENST00000493815 TRIM41Q8WV44 630 aa30.42■■■□□ 2.46
PDLIM7-208ENST00000493815 ABCA10Q8WWZ4 1543 aa30.38■■■□□ 2.45
PDLIM7-208ENST00000493815 EIF4G3O43432 1585 aaKnown RBP30.37■■■□□ 2.45
PDLIM7-208ENST00000493815 WDR97A6NE52 1622 aa30.35■■■□□ 2.45
PDLIM7-208ENST00000493815 CHIC1Q5VXU3 224 aa30.31■■■□□ 2.44
PDLIM7-208ENST00000493815 GAPVD1Q14C86 1478 aa30.25■■■□□ 2.43
PDLIM7-208ENST00000493815 ABCA5Q8WWZ7 1642 aa30.22■■■□□ 2.43
PDLIM7-208ENST00000493815 GRIN2BQ13224 1484 aa30.17■■■□□ 2.42
PDLIM7-208ENST00000493815 SNAPC4Q5SXM2 1469 aa30.12■■■□□ 2.41
PDLIM7-208ENST00000493815 KIF27Q86VH2 1401 aa30.12■■■□□ 2.41
PDLIM7-208ENST00000493815 PBRM1Q86U86 1689 aa30.11■■■□□ 2.41
PDLIM7-208ENST00000493815 RUSC2Q8N2Y8 1516 aa30.08■■■□□ 2.41
PDLIM7-208ENST00000493815 FBLN2P98095 1184 aa30.04■■■□□ 2.4
PDLIM7-208ENST00000493815 MAGI1Q96QZ7 1491 aaPredicted RBP30.02■■■□□ 2.4
PDLIM7-208ENST00000493815 ERICH3Q5RHP9 1530 aa30.01■■■□□ 2.39
PDLIM7-208ENST00000493815 IGF1RP08069 1367 aa29.99■■■□□ 2.39
PDLIM7-208ENST00000493815 CHMP7Q8WUX9 453 aaPredicted RBP29.96■■■□□ 2.39
PDLIM7-208ENST00000493815 SYNJ2O15056 1496 aa29.93■■■□□ 2.38
PDLIM7-208ENST00000493815 ADAMTS12P58397 1594 aa29.92■■■□□ 2.38
PDLIM7-208ENST00000493815 CHD1O14646 1710 aa29.91■■■□□ 2.38
PDLIM7-208ENST00000493815 FHAD1B1AJZ9 1412 aa29.89■■■□□ 2.38
PDLIM7-208ENST00000493815 FAM9AQ8IZU1 332 aaPredicted RBP29.89■■■□□ 2.38
PDLIM7-208ENST00000493815 OSCARQ8IYS5 282 aa29.87■■■□□ 2.37
PDLIM7-208ENST00000493815 CARMIL1Q5VZK9 1371 aa29.81■■■□□ 2.36
PDLIM7-208ENST00000493815 GRIN2AQ12879 1464 aa29.79■■■□□ 2.36
PDLIM7-208ENST00000493815 CUL7Q14999 1698 aa29.79■■■□□ 2.36
PDLIM7-208ENST00000493815 CSRNP3Q8WYN3 585 aa29.76■■■□□ 2.35
PDLIM7-208ENST00000493815 EEA1Q15075 1411 aa29.74■■■□□ 2.35
PDLIM7-208ENST00000493815 DNAJC5Q9H3Z4 198 aa29.68■■■□□ 2.34
PDLIM7-208ENST00000493815 RAPGEF2Q9Y4G8 1499 aa29.66■■■□□ 2.34
PDLIM7-208ENST00000493815 CEP170Q5SW79 1584 aa29.65■■■□□ 2.34
PDLIM7-208ENST00000493815 PRXQ9BXM0 1461 aa29.64■■■□□ 2.34
PDLIM7-208ENST00000493815 NUP160Q12769 1436 aa29.63■■■□□ 2.33
PDLIM7-208ENST00000493815 CLASP1Q7Z460 1538 aa29.57■■■□□ 2.32
PDLIM7-208ENST00000493815 EHMT2Q96KQ7 1210 aa29.56■■■□□ 2.32
PDLIM7-208ENST00000493815 KIAA0586Q9BVV6 1533 aa29.44■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms