RNA–Protein interactions for RNA: ENST00000581737.1

CSNK1D-220, Transcript of casein kinase 1 delta, humanhuman

TSL 2

Gene CSNK1D, Length 631 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1D-220ENST00000581737 NISCHQ9Y2I1 1504 aa32.16■■■□□ 2.74
CSNK1D-220ENST00000581737 ABCC9O60706 1549 aa29.47■■■□□ 2.31
CSNK1D-220ENST00000581737 CCDC180Q9P1Z9 1646 aa28.88■■■□□ 2.21
CSNK1D-220ENST00000581737 DNAJC5BQ9UF47 199 aa28.14■■■□□ 2.1
CSNK1D-220ENST00000581737 RB1CC1Q8TDY2 1594 aa27.73■■■□□ 2.03
CSNK1D-220ENST00000581737 NACADO15069 1562 aa27.45■■□□□ 1.99
CSNK1D-220ENST00000581737 PABPN1Q86U42 306 aaKnown RBP eCLIP27.44■■□□□ 1.983e-7■■■□□ 17.8
CSNK1D-220ENST00000581737 DCAF8L2P0C7V8 631 aa27.37■■□□□ 1.97
CSNK1D-220ENST00000581737 UNC13AQ9UPW8 1703 aa27.12■■□□□ 1.93
CSNK1D-220ENST00000581737 BICRAQ9NZM4 1560 aa27.07■■□□□ 1.92
CSNK1D-220ENST00000581737 MYO15BQ96JP2 1530 aa26.92■■□□□ 1.9
CSNK1D-220ENST00000581737 ZCCHC6Q5VYS8 1495 aaKnown RBP26.8■■□□□ 1.88
CSNK1D-220ENST00000581737 DCAF1Q9Y4B6 1507 aa26.61■■□□□ 1.85
CSNK1D-220ENST00000581737 CECR2Q9BXF3 1484 aa26.55■■□□□ 1.84
CSNK1D-220ENST00000581737 CC2D2AQ9P2K1 1620 aa26.54■■□□□ 1.84
CSNK1D-220ENST00000581737 SHROOM4Q9ULL8 1493 aa26.48■■□□□ 1.83
CSNK1D-220ENST00000581737 SCRIBQ14160 1630 aa26.43■■□□□ 1.82
CSNK1D-220ENST00000581737 EIF4G1Q04637 1599 aaKnown RBP26.39■■□□□ 1.82
CSNK1D-220ENST00000581737 DNAJC5Q9H3Z4 198 aa25.99■■□□□ 1.75
CSNK1D-220ENST00000581737 CUX2O14529 1486 aa25.44■■□□□ 1.66
CSNK1D-220ENST00000581737 NCAPD3P42695 1498 aa25.42■■□□□ 1.66
CSNK1D-220ENST00000581737 ERCC6Q03468 1493 aa25.38■■□□□ 1.65
CSNK1D-220ENST00000581737 ATAD2BQ9ULI0 1458 aa25.32■■□□□ 1.64
CSNK1D-220ENST00000581737 NESP48681 1621 aa25.24■■□□□ 1.63
CSNK1D-220ENST00000581737 SMARCA4P51532 1647 aa25.14■■□□□ 1.61
CSNK1D-220ENST00000581737 HMGXB3Q12766 1538 aa25.13■■□□□ 1.61
CSNK1D-220ENST00000581737 SMARCA2P51531 1590 aa25.11■■□□□ 1.61
CSNK1D-220ENST00000581737 BAZ1BQ9UIG0 1483 aaKnown RBP24.99■■□□□ 1.59
CSNK1D-220ENST00000581737 THOC2Q8NI27 1593 aaKnown RBP24.97■■□□□ 1.59
CSNK1D-220ENST00000581737 BAZ1AQ9NRL2 1556 aaPredicted RBP24.92■■□□□ 1.58
CSNK1D-220ENST00000581737 PEG3Q9GZU2 1588 aa24.88■■□□□ 1.57
CSNK1D-220ENST00000581737 LAMC3Q9Y6N6 1575 aa24.83■■□□□ 1.57
CSNK1D-220ENST00000581737 MROH2BQ7Z745 1585 aa24.82■■□□□ 1.56
CSNK1D-220ENST00000581737 KIF21AQ7Z4S6 1674 aa24.78■■□□□ 1.56
CSNK1D-220ENST00000581737 PDS5BQ9NTI5 1447 aa24.73■■□□□ 1.55
CSNK1D-220ENST00000581737 TRIM41Q8WV44 630 aa24.71■■□□□ 1.55
CSNK1D-220ENST00000581737 CADPSQ9ULU8 1353 aa24.64■■□□□ 1.53
CSNK1D-220ENST00000581737 MRC2Q9UBG0 1479 aa24.57■■□□□ 1.52
CSNK1D-220ENST00000581737 WDR62O43379 1518 aa24.53■■□□□ 1.52
CSNK1D-220ENST00000581737 RSF1Q96T23 1441 aaPredicted RBP24.51■■□□□ 1.51
CSNK1D-220ENST00000581737 WIZO95785 1651 aa24.47■■□□□ 1.51
CSNK1D-220ENST00000581737 CEP164Q9UPV0 1460 aa24.38■■□□□ 1.49
CSNK1D-220ENST00000581737 FANCD2Q9BXW9 1451 aa24.35■■□□□ 1.49
CSNK1D-220ENST00000581737 CFTRP13569 1480 aa24.27■■□□□ 1.48
CSNK1D-220ENST00000581737 TOP2AP11388 1531 aaKnown RBP24.26■■□□□ 1.47
CSNK1D-220ENST00000581737 OSCARQ8IYS5 282 aa24.26■■□□□ 1.47
CSNK1D-220ENST00000581737 URB2Q14146 1524 aaKnown RBP24.22■■□□□ 1.47
CSNK1D-220ENST00000581737 SUPT5HO00267 1087 aaKnown RBP24.05■■□□□ 1.44
CSNK1D-220ENST00000581737 ZNF608Q9ULD9 1512 aaPredicted RBP24.03■■□□□ 1.44
CSNK1D-220ENST00000581737 RIMBP3CA6NJZ7 1639 aa23.99■■□□□ 1.43
CSNK1D-220ENST00000581737 RIMBP3BA6NNM3 1639 aa23.99■■□□□ 1.43
CSNK1D-220ENST00000581737 RIMBP3Q9UFD9 1639 aa23.99■■□□□ 1.43
CSNK1D-220ENST00000581737 CCDC88BA6NC98 1476 aa23.91■■□□□ 1.42
CSNK1D-220ENST00000581737 IFT140Q96RY7 1462 aa23.9■■□□□ 1.42
CSNK1D-220ENST00000581737 ARHGEF11O15085 1522 aa23.89■■□□□ 1.42
CSNK1D-220ENST00000581737 TOPBP1Q92547 1522 aa23.85■■□□□ 1.41
CSNK1D-220ENST00000581737 PRDM2Q13029 1718 aa23.81■■□□□ 1.4
CSNK1D-220ENST00000581737 CYB5RLQ6IPT4 315 aa23.79■■□□□ 1.4
CSNK1D-220ENST00000581737 EIF4G3O43432 1585 aaKnown RBP23.78■■□□□ 1.4
CSNK1D-220ENST00000581737 AQRO60306 1485 aaKnown RBP eCLIP23.75■■□□□ 1.393e-7■■■■□ 23.2
CSNK1D-220ENST00000581737 DNMBPQ6XZF7 1577 aa23.68■■□□□ 1.38
CSNK1D-220ENST00000581737 ARAP1Q96P48 1450 aa23.67■■□□□ 1.38
CSNK1D-220ENST00000581737 TARBP1Q13395 1621 aaKnown RBP23.66■■□□□ 1.38
CSNK1D-220ENST00000581737 ABCC8Q09428 1581 aa23.65■■□□□ 1.38
CSNK1D-220ENST00000581737 CHD1O14646 1710 aa23.63■■□□□ 1.37
CSNK1D-220ENST00000581737 FBLN2P98095 1184 aa23.63■■□□□ 1.37
CSNK1D-220ENST00000581737 TRHP20396 242 aaPredicted RBP23.61■■□□□ 1.37
CSNK1D-220ENST00000581737 POLA1P09884 1462 aaPredicted RBP23.6■■□□□ 1.37
CSNK1D-220ENST00000581737 RAD54L2Q9Y4B4 1467 aa23.58■■□□□ 1.37
CSNK1D-220ENST00000581737 TDRD9Q8NDG6 1382 aaKnown RBP23.53■■□□□ 1.36
CSNK1D-220ENST00000581737 SOGA1O94964 1423 aa23.47■■□□□ 1.35
CSNK1D-220ENST00000581737 SNAPC4Q5SXM2 1469 aa23.44■■□□□ 1.34
CSNK1D-220ENST00000581737 CLASP1Q7Z460 1538 aa23.41■■□□□ 1.34
CSNK1D-220ENST00000581737 FGD5Q6ZNL6 1462 aa23.39■■□□□ 1.34
CSNK1D-220ENST00000581737 CHMP7Q8WUX9 453 aaPredicted RBP23.35■■□□□ 1.33
CSNK1D-220ENST00000581737 CUX1P39880 1505 aa23.33■■□□□ 1.33
CSNK1D-220ENST00000581737 MAGI1Q96QZ7 1491 aaPredicted RBP23.29■■□□□ 1.32
CSNK1D-220ENST00000581737 SYNJ1O43426 1573 aa23.27■■□□□ 1.32
CSNK1D-220ENST00000581737 GRIN2BQ13224 1484 aa23.27■■□□□ 1.32
CSNK1D-220ENST00000581737 SYNJ2O15056 1496 aa23.25■■□□□ 1.31
CSNK1D-220ENST00000581737 WDR97A6NE52 1622 aa23.25■■□□□ 1.31
CSNK1D-220ENST00000581737 GAPVD1Q14C86 1478 aa23.19■■□□□ 1.3
CSNK1D-220ENST00000581737 AEBP2Q6ZN18 517 aaPredicted RBP23.14■■□□□ 1.29
CSNK1D-220ENST00000581737 WRNQ14191 1432 aaPredicted RBP eCLIP23.14■■□□□ 1.29
CSNK1D-220ENST00000581737 ERCC6L2Q5T890 1561 aa23.11■■□□□ 1.29
CSNK1D-220ENST00000581737 PBRM1Q86U86 1689 aa23.11■■□□□ 1.29
CSNK1D-220ENST00000581737 BIVM-ERCC5R4GMW8 1640 aa23.09■■□□□ 1.29
CSNK1D-220ENST00000581737 TOP2BQ02880 1626 aa23.08■■□□□ 1.29
CSNK1D-220ENST00000581737 ABCA5Q8WWZ7 1642 aa23.07■■□□□ 1.28
CSNK1D-220ENST00000581737 ABCA10Q8WWZ4 1543 aa23.07■■□□□ 1.28
CSNK1D-220ENST00000581737 GRIN2AQ12879 1464 aa22.99■■□□□ 1.27
CSNK1D-220ENST00000581737 CEP170Q5SW79 1584 aa22.96■■□□□ 1.27
CSNK1D-220ENST00000581737 NUP160Q12769 1436 aa22.95■■□□□ 1.26
CSNK1D-220ENST00000581737 ADAMTS12P58397 1594 aa22.93■■□□□ 1.26
CSNK1D-220ENST00000581737 SHROOM2Q13796 1616 aa22.86■■□□□ 1.25
CSNK1D-220ENST00000581737 FHAD1B1AJZ9 1412 aa22.83■■□□□ 1.25
CSNK1D-220ENST00000581737 PRG4Q92954 1404 aaPredicted RBP22.77■■□□□ 1.24
CSNK1D-220ENST00000581737 KIF13AQ9H1H9 1805 aa22.75■■□□□ 1.23
CSNK1D-220ENST00000581737 ERICH3Q5RHP9 1530 aa22.73■■□□□ 1.23
CSNK1D-220ENST00000581737 JPH4Q96JJ6 628 aa22.72■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms