RNA–Protein interactions for RNA: ENST00000578501.5

CSNK1D-208, Transcript of casein kinase 1 delta, humanhuman

TSL 2

Gene CSNK1D, Length 1,124 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1D-208ENST00000578501 NISCHQ9Y2I1 1504 aa33.34■■■□□ 2.93
CSNK1D-208ENST00000578501 ABCC9O60706 1549 aa29.91■■■□□ 2.38
CSNK1D-208ENST00000578501 CCDC180Q9P1Z9 1646 aa29.67■■■□□ 2.34
CSNK1D-208ENST00000578501 DNAJC5BQ9UF47 199 aa28.54■■■□□ 2.16
CSNK1D-208ENST00000578501 RB1CC1Q8TDY2 1594 aa28.28■■■□□ 2.12
CSNK1D-208ENST00000578501 NACADO15069 1562 aa27.97■■■□□ 2.07
CSNK1D-208ENST00000578501 DCAF8L2P0C7V8 631 aa27.84■■■□□ 2.05
CSNK1D-208ENST00000578501 MYO15BQ96JP2 1530 aa27.81■■■□□ 2.04
CSNK1D-208ENST00000578501 PABPN1Q86U42 306 aaKnown RBP eCLIP27.78■■■□□ 2.043e-7■■■□□ 17.8
CSNK1D-208ENST00000578501 ZCCHC6Q5VYS8 1495 aaKnown RBP27.74■■■□□ 2.03
CSNK1D-208ENST00000578501 DCAF1Q9Y4B6 1507 aa27.62■■■□□ 2.01
CSNK1D-208ENST00000578501 UNC13AQ9UPW8 1703 aa27.48■■□□□ 1.99
CSNK1D-208ENST00000578501 BICRAQ9NZM4 1560 aa27.39■■□□□ 1.97
CSNK1D-208ENST00000578501 SHROOM4Q9ULL8 1493 aa27.11■■□□□ 1.93
CSNK1D-208ENST00000578501 CECR2Q9BXF3 1484 aa27.05■■□□□ 1.92
CSNK1D-208ENST00000578501 SCRIBQ14160 1630 aa27.01■■□□□ 1.91
CSNK1D-208ENST00000578501 CC2D2AQ9P2K1 1620 aa26.98■■□□□ 1.91
CSNK1D-208ENST00000578501 EIF4G1Q04637 1599 aaKnown RBP26.8■■□□□ 1.88
CSNK1D-208ENST00000578501 DNAJC5Q9H3Z4 198 aa26.72■■□□□ 1.87
CSNK1D-208ENST00000578501 CUX2O14529 1486 aa26.08■■□□□ 1.77
CSNK1D-208ENST00000578501 ERCC6Q03468 1493 aa25.93■■□□□ 1.74
CSNK1D-208ENST00000578501 SMARCA4P51532 1647 aa25.86■■□□□ 1.73
CSNK1D-208ENST00000578501 BAZ1AQ9NRL2 1556 aaPredicted RBP25.84■■□□□ 1.73
CSNK1D-208ENST00000578501 NCAPD3P42695 1498 aa25.84■■□□□ 1.73
CSNK1D-208ENST00000578501 ATAD2BQ9ULI0 1458 aa25.79■■□□□ 1.72
CSNK1D-208ENST00000578501 SMARCA2P51531 1590 aa25.75■■□□□ 1.71
CSNK1D-208ENST00000578501 MROH2BQ7Z745 1585 aa25.66■■□□□ 1.7
CSNK1D-208ENST00000578501 PEG3Q9GZU2 1588 aa25.66■■□□□ 1.7
CSNK1D-208ENST00000578501 HMGXB3Q12766 1538 aa25.65■■□□□ 1.7
CSNK1D-208ENST00000578501 BAZ1BQ9UIG0 1483 aaKnown RBP25.54■■□□□ 1.68
CSNK1D-208ENST00000578501 NESP48681 1621 aa25.51■■□□□ 1.67
CSNK1D-208ENST00000578501 RSF1Q96T23 1441 aaPredicted RBP25.36■■□□□ 1.65
CSNK1D-208ENST00000578501 THOC2Q8NI27 1593 aaKnown RBP25.35■■□□□ 1.65
CSNK1D-208ENST00000578501 WIZO95785 1651 aa25.35■■□□□ 1.65
CSNK1D-208ENST00000578501 LAMC3Q9Y6N6 1575 aa25.31■■□□□ 1.64
CSNK1D-208ENST00000578501 TRIM41Q8WV44 630 aa25.28■■□□□ 1.64
CSNK1D-208ENST00000578501 PDS5BQ9NTI5 1447 aa25.25■■□□□ 1.63
CSNK1D-208ENST00000578501 KIF21AQ7Z4S6 1674 aa25.13■■□□□ 1.61
CSNK1D-208ENST00000578501 TOP2AP11388 1531 aaKnown RBP25.12■■□□□ 1.61
CSNK1D-208ENST00000578501 CADPSQ9ULU8 1353 aa25.05■■□□□ 1.6
CSNK1D-208ENST00000578501 MRC2Q9UBG0 1479 aa25.01■■□□□ 1.59
CSNK1D-208ENST00000578501 WDR62O43379 1518 aa24.93■■□□□ 1.58
CSNK1D-208ENST00000578501 CFTRP13569 1480 aa24.88■■□□□ 1.57
CSNK1D-208ENST00000578501 OSCARQ8IYS5 282 aa24.86■■□□□ 1.57
CSNK1D-208ENST00000578501 CCDC88BA6NC98 1476 aa24.83■■□□□ 1.56
CSNK1D-208ENST00000578501 CEP164Q9UPV0 1460 aa24.8■■□□□ 1.56
CSNK1D-208ENST00000578501 FANCD2Q9BXW9 1451 aa24.73■■□□□ 1.55
CSNK1D-208ENST00000578501 PRDM2Q13029 1718 aa24.6■■□□□ 1.53
CSNK1D-208ENST00000578501 SUPT5HO00267 1087 aaKnown RBP24.57■■□□□ 1.52
CSNK1D-208ENST00000578501 URB2Q14146 1524 aaKnown RBP24.5■■□□□ 1.51
CSNK1D-208ENST00000578501 RIMBP3CA6NJZ7 1639 aa24.45■■□□□ 1.5
CSNK1D-208ENST00000578501 RIMBP3BA6NNM3 1639 aa24.45■■□□□ 1.5
CSNK1D-208ENST00000578501 RIMBP3Q9UFD9 1639 aa24.45■■□□□ 1.5
CSNK1D-208ENST00000578501 ABCC8Q09428 1581 aa24.37■■□□□ 1.49
CSNK1D-208ENST00000578501 ARHGEF11O15085 1522 aa24.35■■□□□ 1.49
CSNK1D-208ENST00000578501 IFT140Q96RY7 1462 aa24.34■■□□□ 1.49
CSNK1D-208ENST00000578501 TOPBP1Q92547 1522 aa24.32■■□□□ 1.48
CSNK1D-208ENST00000578501 ZNF608Q9ULD9 1512 aaPredicted RBP24.28■■□□□ 1.48
CSNK1D-208ENST00000578501 CYB5RLQ6IPT4 315 aa24.27■■□□□ 1.48
CSNK1D-208ENST00000578501 DNMBPQ6XZF7 1577 aa24.27■■□□□ 1.48
CSNK1D-208ENST00000578501 TRHP20396 242 aaPredicted RBP24.2■■□□□ 1.46
CSNK1D-208ENST00000578501 EIF4G3O43432 1585 aaKnown RBP24.11■■□□□ 1.45
CSNK1D-208ENST00000578501 POLA1P09884 1462 aaPredicted RBP24.1■■□□□ 1.45
CSNK1D-208ENST00000578501 CUX1P39880 1505 aa24.09■■□□□ 1.45
CSNK1D-208ENST00000578501 ARAP1Q96P48 1450 aa24.06■■□□□ 1.44
CSNK1D-208ENST00000578501 FBLN2P98095 1184 aa24.05■■□□□ 1.44
CSNK1D-208ENST00000578501 TARBP1Q13395 1621 aaKnown RBP24.05■■□□□ 1.44
CSNK1D-208ENST00000578501 SOGA1O94964 1423 aa24.02■■□□□ 1.44
CSNK1D-208ENST00000578501 AQRO60306 1485 aaKnown RBP eCLIP24.02■■□□□ 1.442e-7■■■■■ 38.3
CSNK1D-208ENST00000578501 FGD5Q6ZNL6 1462 aa24.01■■□□□ 1.43
CSNK1D-208ENST00000578501 CHD1O14646 1710 aa24■■□□□ 1.43
CSNK1D-208ENST00000578501 RAD54L2Q9Y4B4 1467 aa23.98■■□□□ 1.43
CSNK1D-208ENST00000578501 AEBP2Q6ZN18 517 aaPredicted RBP23.95■■□□□ 1.42
CSNK1D-208ENST00000578501 WDR97A6NE52 1622 aa23.91■■□□□ 1.42
CSNK1D-208ENST00000578501 WRNQ14191 1432 aaPredicted RBP eCLIP23.9■■□□□ 1.42
CSNK1D-208ENST00000578501 TDRD9Q8NDG6 1382 aaKnown RBP23.87■■□□□ 1.41
CSNK1D-208ENST00000578501 TOP2BQ02880 1626 aa23.85■■□□□ 1.41
CSNK1D-208ENST00000578501 BIVM-ERCC5R4GMW8 1640 aa23.84■■□□□ 1.41
CSNK1D-208ENST00000578501 ABCA10Q8WWZ4 1543 aa23.81■■□□□ 1.4
CSNK1D-208ENST00000578501 CHMP7Q8WUX9 453 aaPredicted RBP23.81■■□□□ 1.4
CSNK1D-208ENST00000578501 SYNJ1O43426 1573 aa23.81■■□□□ 1.4
CSNK1D-208ENST00000578501 CLASP1Q7Z460 1538 aa23.76■■□□□ 1.39
CSNK1D-208ENST00000578501 GRIN2BQ13224 1484 aa23.75■■□□□ 1.39
CSNK1D-208ENST00000578501 SNAPC4Q5SXM2 1469 aa23.75■■□□□ 1.39
CSNK1D-208ENST00000578501 GAPVD1Q14C86 1478 aa23.74■■□□□ 1.39
CSNK1D-208ENST00000578501 MAGI1Q96QZ7 1491 aaPredicted RBP23.73■■□□□ 1.39
CSNK1D-208ENST00000578501 ABCA5Q8WWZ7 1642 aa23.7■■□□□ 1.38
CSNK1D-208ENST00000578501 SYNJ2O15056 1496 aa23.65■■□□□ 1.38
CSNK1D-208ENST00000578501 PBRM1Q86U86 1689 aa23.63■■□□□ 1.37
CSNK1D-208ENST00000578501 ERICH3Q5RHP9 1530 aa23.53■■□□□ 1.36
CSNK1D-208ENST00000578501 FHAD1B1AJZ9 1412 aa23.47■■□□□ 1.35
CSNK1D-208ENST00000578501 ADAMTS12P58397 1594 aa23.47■■□□□ 1.35
CSNK1D-208ENST00000578501 GRIN2AQ12879 1464 aa23.43■■□□□ 1.34
CSNK1D-208ENST00000578501 KIF27Q86VH2 1401 aa23.43■■□□□ 1.34
CSNK1D-208ENST00000578501 NUP160Q12769 1436 aa23.36■■□□□ 1.33
CSNK1D-208ENST00000578501 IGF1RP08069 1367 aa23.36■■□□□ 1.33
CSNK1D-208ENST00000578501 CEP170Q5SW79 1584 aa23.3■■□□□ 1.32
CSNK1D-208ENST00000578501 ERCC6L2Q5T890 1561 aa23.3■■□□□ 1.32
CSNK1D-208ENST00000578501 CUL7Q14999 1698 aa23.26■■□□□ 1.31
CSNK1D-208ENST00000578501 CARMIL1Q5VZK9 1371 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms