RNA–Protein interactions for RNA: ENST00000486828.6

PDLIM7-207, Transcript of PDZ and LIM domain 7, humanhuman

TSL 1 (best)

Gene PDLIM7, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-207ENST00000486828 NISCHQ9Y2I1 1504 aa38.31■■■■□ 3.72
PDLIM7-207ENST00000486828 CCDC180Q9P1Z9 1646 aa33.21■■■□□ 2.91
PDLIM7-207ENST00000486828 ZCCHC6Q5VYS8 1495 aaKnown RBP32.38■■■□□ 2.77
PDLIM7-207ENST00000486828 SHROOM4Q9ULL8 1493 aa32.11■■■□□ 2.73
PDLIM7-207ENST00000486828 ABCC9O60706 1549 aa31.99■■■□□ 2.71
PDLIM7-207ENST00000486828 DCAF1Q9Y4B6 1507 aa31.6■■■□□ 2.65
PDLIM7-207ENST00000486828 DCAF8L2P0C7V8 631 aa31.47■■■□□ 2.63
PDLIM7-207ENST00000486828 SUPT5HO00267 1087 aaKnown RBP31.36■■■□□ 2.61
PDLIM7-207ENST00000486828 MYO15BQ96JP2 1530 aa31.12■■■□□ 2.57
PDLIM7-207ENST00000486828 NACADO15069 1562 aa31.08■■■□□ 2.57
PDLIM7-207ENST00000486828 RB1CC1Q8TDY2 1594 aa30.94■■■□□ 2.54
PDLIM7-207ENST00000486828 SCRIBQ14160 1630 aa30.51■■■□□ 2.47
PDLIM7-207ENST00000486828 CHIC1Q5VXU3 224 aa30.48■■■□□ 2.47
PDLIM7-207ENST00000486828 UNC13AQ9UPW8 1703 aa30.26■■■□□ 2.44
PDLIM7-207ENST00000486828 RSF1Q96T23 1441 aaPredicted RBP30.13■■■□□ 2.41
PDLIM7-207ENST00000486828 PABPN1Q86U42 306 aaKnown RBP eCLIP30.04■■■□□ 2.43e-7■■■■■ 28.5
PDLIM7-207ENST00000486828 BICRAQ9NZM4 1560 aa30.02■■■□□ 2.4
PDLIM7-207ENST00000486828 CECR2Q9BXF3 1484 aa29.78■■■□□ 2.36
PDLIM7-207ENST00000486828 MROH2BQ7Z745 1585 aa29.69■■■□□ 2.34
PDLIM7-207ENST00000486828 WIZO95785 1651 aa29.51■■■□□ 2.32
PDLIM7-207ENST00000486828 BAZ1AQ9NRL2 1556 aaPredicted RBP29.48■■■□□ 2.31
PDLIM7-207ENST00000486828 LOC105371045A0A1W2PR82 267 aa29.42■■■□□ 2.3
PDLIM7-207ENST00000486828 TRIM41Q8WV44 630 aa29.34■■■□□ 2.29
PDLIM7-207ENST00000486828 SMARCA4P51532 1647 aa29.25■■■□□ 2.27
PDLIM7-207ENST00000486828 TOP2AP11388 1531 aaKnown RBP29.17■■■□□ 2.26
PDLIM7-207ENST00000486828 EIF4G1Q04637 1599 aaKnown RBP29.16■■■□□ 2.26
PDLIM7-207ENST00000486828 DNAJC5BQ9UF47 199 aa29.13■■■□□ 2.25
PDLIM7-207ENST00000486828 PCGF6Q9BYE7 350 aa29.1■■■□□ 2.25
PDLIM7-207ENST00000486828 HRCP23327 699 aa29.02■■■□□ 2.24
PDLIM7-207ENST00000486828 SMARCA2P51531 1590 aa28.95■■■□□ 2.22
PDLIM7-207ENST00000486828 CCDC88BA6NC98 1476 aa28.94■■■□□ 2.22
PDLIM7-207ENST00000486828 FAM9AQ8IZU1 332 aaPredicted RBP28.93■■■□□ 2.22
PDLIM7-207ENST00000486828 CC2D2AQ9P2K1 1620 aa28.92■■■□□ 2.22
PDLIM7-207ENST00000486828 PEG3Q9GZU2 1588 aa28.85■■■□□ 2.21
PDLIM7-207ENST00000486828 ATAD2BQ9ULI0 1458 aa28.84■■■□□ 2.21
PDLIM7-207ENST00000486828 TRIM26Q12899 539 aaPredicted RBP28.77■■■□□ 2.2
PDLIM7-207ENST00000486828 NCAPD3P42695 1498 aa28.7■■■□□ 2.19
PDLIM7-207ENST00000486828 ABCC8Q09428 1581 aa28.69■■■□□ 2.18
PDLIM7-207ENST00000486828 BAZ1BQ9UIG0 1483 aaKnown RBP28.64■■■□□ 2.18
PDLIM7-207ENST00000486828 HMGXB3Q12766 1538 aa28.6■■■□□ 2.17
PDLIM7-207ENST00000486828 EHMT2Q96KQ7 1210 aa28.55■■■□□ 2.16
PDLIM7-207ENST00000486828 EEA1Q15075 1411 aa28.37■■■□□ 2.13
PDLIM7-207ENST00000486828 SOGA1O94964 1423 aa28.35■■■□□ 2.13
PDLIM7-207ENST00000486828 WRNQ14191 1432 aaPredicted RBP eCLIP28.33■■■□□ 2.13
PDLIM7-207ENST00000486828 PPARGC1BQ86YN6 1023 aaKnown RBP28.28■■■□□ 2.12
PDLIM7-207ENST00000486828 RUSC2Q8N2Y8 1516 aa28.2■■■□□ 2.11
PDLIM7-207ENST00000486828 SYNJ1O43426 1573 aa28.2■■■□□ 2.1
PDLIM7-207ENST00000486828 CSRNP3Q8WYN3 585 aa28.2■■■□□ 2.1
PDLIM7-207ENST00000486828 TNIKQ9UKE5 1360 aa28.18■■■□□ 2.1
PDLIM7-207ENST00000486828 CEP162Q5TB80 1403 aa28.13■■■□□ 2.09
PDLIM7-207ENST00000486828 ZEB1P37275 1124 aaPredicted RBP28.08■■■□□ 2.09
PDLIM7-207ENST00000486828 GOLGA3Q08378 1498 aa28.08■■■□□ 2.09
PDLIM7-207ENST00000486828 KIF21BO75037 1637 aa27.98■■■□□ 2.07
PDLIM7-207ENST00000486828 CEP164Q9UPV0 1460 aa27.96■■■□□ 2.07
PDLIM7-207ENST00000486828 TOP2BQ02880 1626 aa27.96■■■□□ 2.07
PDLIM7-207ENST00000486828 UBTFP17480 764 aaKnown RBP27.96■■■□□ 2.07
PDLIM7-207ENST00000486828 CADPSQ9ULU8 1353 aa27.93■■■□□ 2.06
PDLIM7-207ENST00000486828 CFTRP13569 1480 aa27.91■■■□□ 2.06
PDLIM7-207ENST00000486828 BIVM-ERCC5R4GMW8 1640 aa27.9■■■□□ 2.06
PDLIM7-207ENST00000486828 NESP48681 1621 aa27.86■■■□□ 2.05
PDLIM7-207ENST00000486828 LAMC3Q9Y6N6 1575 aa27.8■■■□□ 2.04
PDLIM7-207ENST00000486828 RAPGEF2Q9Y4G8 1499 aa27.71■■■□□ 2.03
PDLIM7-207ENST00000486828 CUX1P39880 1505 aa27.69■■■□□ 2.02
PDLIM7-207ENST00000486828 CLIP1P30622 1438 aa27.68■■■□□ 2.02
PDLIM7-207ENST00000486828 PRDM2Q13029 1718 aa27.68■■■□□ 2.02
PDLIM7-207ENST00000486828 PDS5BQ9NTI5 1447 aa27.62■■■□□ 2.01
PDLIM7-207ENST00000486828 FANCD2Q9BXW9 1451 aa27.6■■■□□ 2.01
PDLIM7-207ENST00000486828 ERICH3Q5RHP9 1530 aa27.6■■■□□ 2.01
PDLIM7-207ENST00000486828 TTBK1Q5TCY1 1321 aaPredicted RBP27.6■■■□□ 2.01
PDLIM7-207ENST00000486828 PRXQ9BXM0 1461 aa27.57■■■□□ 2
PDLIM7-207ENST00000486828 VPS8Q8N3P4 1428 aa27.57■■■□□ 2
PDLIM7-207ENST00000486828 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.54■■■□□ 2
PDLIM7-207ENST00000486828 CCER1Q8TC90 406 aaPredicted RBP27.51■■■□□ 2
PDLIM7-207ENST00000486828 KIF27Q86VH2 1401 aa27.5■■□□□ 1.99
PDLIM7-207ENST00000486828 KIF21AQ7Z4S6 1674 aa27.48■■□□□ 1.99
PDLIM7-207ENST00000486828 ERCC6Q03468 1493 aa27.46■■□□□ 1.99
PDLIM7-207ENST00000486828 APLP2Q06481 763 aa27.33■■□□□ 1.97
PDLIM7-207ENST00000486828 RANGAP1P46060 587 aaPredicted RBP27.31■■□□□ 1.96
PDLIM7-207ENST00000486828 ARAP1Q96P48 1450 aa27.3■■□□□ 1.96
PDLIM7-207ENST00000486828 URB2Q14146 1524 aaKnown RBP27.29■■□□□ 1.96
PDLIM7-207ENST00000486828 MRC2Q9UBG0 1479 aa27.29■■□□□ 1.96
PDLIM7-207ENST00000486828 CUX2O14529 1486 aa27.25■■□□□ 1.95
PDLIM7-207ENST00000486828 DNMBPQ6XZF7 1577 aa27.24■■□□□ 1.95
PDLIM7-207ENST00000486828 THOC2Q8NI27 1593 aaKnown RBP27.24■■□□□ 1.95
PDLIM7-207ENST00000486828 TOPBP1Q92547 1522 aa27.24■■□□□ 1.95
PDLIM7-207ENST00000486828 FGD5Q6ZNL6 1462 aa27.24■■□□□ 1.95
PDLIM7-207ENST00000486828 IGF1RP08069 1367 aa27.19■■□□□ 1.94
PDLIM7-207ENST00000486828 WDR62O43379 1518 aa27.17■■□□□ 1.94
PDLIM7-207ENST00000486828 ARHGAP35Q9NRY4 1499 aa27.12■■□□□ 1.93
PDLIM7-207ENST00000486828 HNRNPUL2Q1KMD3 747 aaKnown RBP27.1■■□□□ 1.93
PDLIM7-207ENST00000486828 POLA1P09884 1462 aaPredicted RBP27.07■■□□□ 1.92
PDLIM7-207ENST00000486828 CARMIL1Q5VZK9 1371 aa27.06■■□□□ 1.92
PDLIM7-207ENST00000486828 KANK4Q5T7N3 995 aaPredicted RBP26.98■■□□□ 1.91
PDLIM7-207ENST00000486828 ABCA10Q8WWZ4 1543 aa26.98■■□□□ 1.91
PDLIM7-207ENST00000486828 RAD54L2Q9Y4B4 1467 aa26.97■■□□□ 1.91
PDLIM7-207ENST00000486828 RRBP1Q9P2E9 1410 aaKnown RBP26.9■■□□□ 1.9
PDLIM7-207ENST00000486828 TARBP1Q13395 1621 aaKnown RBP26.87■■□□□ 1.89
PDLIM7-207ENST00000486828 IFT140Q96RY7 1462 aa26.87■■□□□ 1.89
PDLIM7-207ENST00000486828 MAP3K1Q13233 1512 aa26.86■■□□□ 1.89
PDLIM7-207ENST00000486828 CUL7Q14999 1698 aa26.83■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms