RNA–Protein interactions for RNA: ENST00000503827.5

PDLIM7-210, Transcript of PDZ and LIM domain 7, humanhuman

TSL 5

Gene PDLIM7, Length 451 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-210ENST00000503827 NISCHQ9Y2I1 1504 aa40.57■■■■■ 4.08
PDLIM7-210ENST00000503827 ABCC9O60706 1549 aa37.36■■■■□ 3.57
PDLIM7-210ENST00000503827 CCDC180Q9P1Z9 1646 aa36.76■■■■□ 3.48
PDLIM7-210ENST00000503827 DNAJC5BQ9UF47 199 aa35.6■■■■□ 3.29
PDLIM7-210ENST00000503827 RB1CC1Q8TDY2 1594 aa35.31■■■■□ 3.24
PDLIM7-210ENST00000503827 NACADO15069 1562 aa34.88■■■■□ 3.17
PDLIM7-210ENST00000503827 PABPN1Q86U42 306 aaKnown RBP eCLIP34.65■■■■□ 3.14
PDLIM7-210ENST00000503827 DCAF8L2P0C7V8 631 aa34.56■■■■□ 3.12
PDLIM7-210ENST00000503827 UNC13AQ9UPW8 1703 aa34.55■■■■□ 3.12
PDLIM7-210ENST00000503827 BICRAQ9NZM4 1560 aa34.26■■■■□ 3.07
PDLIM7-210ENST00000503827 MYO15BQ96JP2 1530 aa34.16■■■■□ 3.06
PDLIM7-210ENST00000503827 SHROOM4Q9ULL8 1493 aa33.76■■■□□ 2.99
PDLIM7-210ENST00000503827 CC2D2AQ9P2K1 1620 aa33.74■■■□□ 2.99
PDLIM7-210ENST00000503827 CECR2Q9BXF3 1484 aa33.73■■■□□ 2.99
PDLIM7-210ENST00000503827 EIF4G1Q04637 1599 aaKnown RBP33.49■■■□□ 2.95
PDLIM7-210ENST00000503827 DCAF1Q9Y4B6 1507 aa33.48■■■□□ 2.95
PDLIM7-210ENST00000503827 ZCCHC6Q5VYS8 1495 aaKnown RBP33.46■■■□□ 2.95
PDLIM7-210ENST00000503827 SCRIBQ14160 1630 aa33.41■■■□□ 2.94
PDLIM7-210ENST00000503827 DNAJC5Q9H3Z4 198 aa33.24■■■□□ 2.91
PDLIM7-210ENST00000503827 CUX2O14529 1486 aa32.5■■■□□ 2.79
PDLIM7-210ENST00000503827 ERCC6Q03468 1493 aa32.34■■■□□ 2.77
PDLIM7-210ENST00000503827 NCAPD3P42695 1498 aa32.18■■■□□ 2.74
PDLIM7-210ENST00000503827 ATAD2BQ9ULI0 1458 aa31.98■■■□□ 2.71
PDLIM7-210ENST00000503827 HMGXB3Q12766 1538 aa31.9■■■□□ 2.7
PDLIM7-210ENST00000503827 SMARCA2P51531 1590 aa31.9■■■□□ 2.7
PDLIM7-210ENST00000503827 NESP48681 1621 aa31.89■■■□□ 2.7
PDLIM7-210ENST00000503827 SMARCA4P51532 1647 aa31.81■■■□□ 2.68
PDLIM7-210ENST00000503827 THOC2Q8NI27 1593 aaKnown RBP31.73■■■□□ 2.67
PDLIM7-210ENST00000503827 BAZ1BQ9UIG0 1483 aaKnown RBP31.66■■■□□ 2.66
PDLIM7-210ENST00000503827 LAMC3Q9Y6N6 1575 aa31.61■■■□□ 2.65
PDLIM7-210ENST00000503827 BAZ1AQ9NRL2 1556 aaPredicted RBP31.56■■■□□ 2.64
PDLIM7-210ENST00000503827 KIF21AQ7Z4S6 1674 aa31.51■■■□□ 2.64
PDLIM7-210ENST00000503827 TRIM41Q8WV44 630 aa31.51■■■□□ 2.63
PDLIM7-210ENST00000503827 PEG3Q9GZU2 1588 aa31.49■■■□□ 2.63
PDLIM7-210ENST00000503827 PDS5BQ9NTI5 1447 aa31.43■■■□□ 2.62
PDLIM7-210ENST00000503827 MROH2BQ7Z745 1585 aa31.24■■■□□ 2.59
PDLIM7-210ENST00000503827 MRC2Q9UBG0 1479 aa31.19■■■□□ 2.58
PDLIM7-210ENST00000503827 CADPSQ9ULU8 1353 aa31.17■■■□□ 2.58
PDLIM7-210ENST00000503827 WDR62O43379 1518 aa31.14■■■□□ 2.57
PDLIM7-210ENST00000503827 CEP164Q9UPV0 1460 aa30.94■■■□□ 2.54
PDLIM7-210ENST00000503827 OSCARQ8IYS5 282 aa30.91■■■□□ 2.54
PDLIM7-210ENST00000503827 WIZO95785 1651 aa30.87■■■□□ 2.53
PDLIM7-210ENST00000503827 FANCD2Q9BXW9 1451 aa30.83■■■□□ 2.53
PDLIM7-210ENST00000503827 CFTRP13569 1480 aa30.67■■■□□ 2.5
PDLIM7-210ENST00000503827 URB2Q14146 1524 aaKnown RBP30.6■■■□□ 2.49
PDLIM7-210ENST00000503827 RIMBP3CA6NJZ7 1639 aa30.59■■■□□ 2.49
PDLIM7-210ENST00000503827 RIMBP3BA6NNM3 1639 aa30.59■■■□□ 2.49
PDLIM7-210ENST00000503827 RIMBP3Q9UFD9 1639 aa30.59■■■□□ 2.49
PDLIM7-210ENST00000503827 TOP2AP11388 1531 aaKnown RBP30.42■■■□□ 2.46
PDLIM7-210ENST00000503827 PRDM2Q13029 1718 aa30.42■■■□□ 2.46
PDLIM7-210ENST00000503827 ARHGEF11O15085 1522 aa30.4■■■□□ 2.46
PDLIM7-210ENST00000503827 IFT140Q96RY7 1462 aa30.34■■■□□ 2.45
PDLIM7-210ENST00000503827 ZNF608Q9ULD9 1512 aaPredicted RBP30.33■■■□□ 2.45
PDLIM7-210ENST00000503827 RSF1Q96T23 1441 aaPredicted RBP30.33■■■□□ 2.45
PDLIM7-210ENST00000503827 CYB5RLQ6IPT4 315 aa30.22■■■□□ 2.43
PDLIM7-210ENST00000503827 TOPBP1Q92547 1522 aa30.17■■■□□ 2.42
PDLIM7-210ENST00000503827 EIF4G3O43432 1585 aaKnown RBP30.17■■■□□ 2.42
PDLIM7-210ENST00000503827 TRHP20396 242 aaPredicted RBP30.14■■■□□ 2.42
PDLIM7-210ENST00000503827 CHD1O14646 1710 aa30.12■■■□□ 2.41
PDLIM7-210ENST00000503827 ABCC8Q09428 1581 aa30.11■■■□□ 2.41
PDLIM7-210ENST00000503827 CCDC88BA6NC98 1476 aa30.06■■■□□ 2.4
PDLIM7-210ENST00000503827 ARAP1Q96P48 1450 aa30.04■■■□□ 2.4
PDLIM7-210ENST00000503827 DNMBPQ6XZF7 1577 aa30.02■■■□□ 2.4
PDLIM7-210ENST00000503827 AQRO60306 1485 aaKnown RBP eCLIP29.98■■■□□ 2.394e-10■■■■□ 25.6
PDLIM7-210ENST00000503827 TARBP1Q13395 1621 aaKnown RBP29.96■■■□□ 2.39
PDLIM7-210ENST00000503827 FBLN2P98095 1184 aa29.95■■■□□ 2.39
PDLIM7-210ENST00000503827 POLA1P09884 1462 aaPredicted RBP29.8■■■□□ 2.36
PDLIM7-210ENST00000503827 AEBP2Q6ZN18 517 aaPredicted RBP29.78■■■□□ 2.36
PDLIM7-210ENST00000503827 RAD54L2Q9Y4B4 1467 aa29.7■■■□□ 2.35
PDLIM7-210ENST00000503827 CLASP1Q7Z460 1538 aa29.7■■■□□ 2.34
PDLIM7-210ENST00000503827 TDRD9Q8NDG6 1382 aaKnown RBP29.69■■■□□ 2.34
PDLIM7-210ENST00000503827 SOGA1O94964 1423 aa29.68■■■□□ 2.34
PDLIM7-210ENST00000503827 SNAPC4Q5SXM2 1469 aa29.67■■■□□ 2.34
PDLIM7-210ENST00000503827 SYNJ1O43426 1573 aa29.66■■■□□ 2.34
PDLIM7-210ENST00000503827 WDR97A6NE52 1622 aa29.65■■■□□ 2.34
PDLIM7-210ENST00000503827 CHMP7Q8WUX9 453 aaPredicted RBP29.63■■■□□ 2.33
PDLIM7-210ENST00000503827 MAGI1Q96QZ7 1491 aaPredicted RBP29.57■■■□□ 2.32
PDLIM7-210ENST00000503827 FGD5Q6ZNL6 1462 aa29.54■■■□□ 2.32
PDLIM7-210ENST00000503827 GRIN2BQ13224 1484 aa29.5■■■□□ 2.31
PDLIM7-210ENST00000503827 SYNJ2O15056 1496 aa29.48■■■□□ 2.31
PDLIM7-210ENST00000503827 GAPVD1Q14C86 1478 aa29.43■■■□□ 2.3
PDLIM7-210ENST00000503827 PBRM1Q86U86 1689 aa29.4■■■□□ 2.3
PDLIM7-210ENST00000503827 CUX1P39880 1505 aa29.39■■■□□ 2.3
PDLIM7-210ENST00000503827 ABCA5Q8WWZ7 1642 aa29.19■■■□□ 2.26
PDLIM7-210ENST00000503827 ERCC6L2Q5T890 1561 aa29.17■■■□□ 2.26
PDLIM7-210ENST00000503827 ABCA10Q8WWZ4 1543 aa29.15■■■□□ 2.26
PDLIM7-210ENST00000503827 GRIN2AQ12879 1464 aa29.11■■■□□ 2.25
PDLIM7-210ENST00000503827 CEP170Q5SW79 1584 aa29.09■■■□□ 2.25
PDLIM7-210ENST00000503827 KIF13AQ9H1H9 1805 aa29.04■■■□□ 2.24
PDLIM7-210ENST00000503827 NUP160Q12769 1436 aa29.03■■■□□ 2.24
PDLIM7-210ENST00000503827 ADAMTS12P58397 1594 aa29.02■■■□□ 2.24
PDLIM7-210ENST00000503827 SHROOM2Q13796 1616 aa29.01■■■□□ 2.23
PDLIM7-210ENST00000503827 WRNQ14191 1432 aaPredicted RBP eCLIP28.92■■■□□ 2.22
PDLIM7-210ENST00000503827 FHAD1B1AJZ9 1412 aa28.91■■■□□ 2.22
PDLIM7-210ENST00000503827 PRG4Q92954 1404 aaPredicted RBP28.82■■■□□ 2.2
PDLIM7-210ENST00000503827 ERICH3Q5RHP9 1530 aa28.8■■■□□ 2.2
PDLIM7-210ENST00000503827 BIVM-ERCC5R4GMW8 1640 aa28.79■■■□□ 2.2
PDLIM7-210ENST00000503827 FAM69CQ0P6D2 419 aa28.77■■■□□ 2.2
PDLIM7-210ENST00000503827 TOP2BQ02880 1626 aa28.76■■■□□ 2.2
PDLIM7-210ENST00000503827 ABCC10Q5T3U5 1492 aa28.75■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms