RNA–Protein interactions for RNA: ENST00000359895.6

PDLIM7-203, Transcript of PDZ and LIM domain 7, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PDLIM7, Length 1,567 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-203ENST00000359895 NISCHQ9Y2I1 1504 aa40.01■■■■■ 4
PDLIM7-203ENST00000359895 CCDC180Q9P1Z9 1646 aa34.71■■■■□ 3.15
PDLIM7-203ENST00000359895 ZCCHC6Q5VYS8 1495 aaKnown RBP33.74■■■□□ 2.99
PDLIM7-203ENST00000359895 DCAF1Q9Y4B6 1507 aa33.12■■■□□ 2.89
PDLIM7-203ENST00000359895 ABCC9O60706 1549 aa33.08■■■□□ 2.89
PDLIM7-203ENST00000359895 SHROOM4Q9ULL8 1493 aa33.01■■■□□ 2.87
PDLIM7-203ENST00000359895 DCAF8L2P0C7V8 631 aa32.79■■■□□ 2.84
PDLIM7-203ENST00000359895 MYO15BQ96JP2 1530 aa32.49■■■□□ 2.79
PDLIM7-203ENST00000359895 NACADO15069 1562 aa32.13■■■□□ 2.73
PDLIM7-203ENST00000359895 SUPT5HO00267 1087 aaKnown RBP32.07■■■□□ 2.72
PDLIM7-203ENST00000359895 SCRIBQ14160 1630 aa31.93■■■□□ 2.7
PDLIM7-203ENST00000359895 RB1CC1Q8TDY2 1594 aa31.9■■■□□ 2.7
PDLIM7-203ENST00000359895 UNC13AQ9UPW8 1703 aa31.34■■■□□ 2.61
PDLIM7-203ENST00000359895 RSF1Q96T23 1441 aaPredicted RBP31.24■■■□□ 2.59
PDLIM7-203ENST00000359895 CHIC1Q5VXU3 224 aa31.03■■■□□ 2.56
PDLIM7-203ENST00000359895 CECR2Q9BXF3 1484 aa31■■■□□ 2.55
PDLIM7-203ENST00000359895 BICRAQ9NZM4 1560 aa30.98■■■□□ 2.55
PDLIM7-203ENST00000359895 PABPN1Q86U42 306 aaKnown RBP eCLIP30.92■■■□□ 2.543e-7■■■■■ 28.5
PDLIM7-203ENST00000359895 MROH2BQ7Z745 1585 aa30.92■■■□□ 2.54
PDLIM7-203ENST00000359895 BAZ1AQ9NRL2 1556 aaPredicted RBP30.87■■■□□ 2.53
PDLIM7-203ENST00000359895 WIZO95785 1651 aa30.75■■■□□ 2.51
PDLIM7-203ENST00000359895 SMARCA4P51532 1647 aa30.67■■■□□ 2.5
PDLIM7-203ENST00000359895 TOP2AP11388 1531 aaKnown RBP30.44■■■□□ 2.46
PDLIM7-203ENST00000359895 DNAJC5BQ9UF47 199 aa30.32■■■□□ 2.44
PDLIM7-203ENST00000359895 PEG3Q9GZU2 1588 aa30.26■■■□□ 2.43
PDLIM7-203ENST00000359895 SMARCA2P51531 1590 aa30.17■■■□□ 2.42
PDLIM7-203ENST00000359895 EIF4G1Q04637 1599 aaKnown RBP30.17■■■□□ 2.42
PDLIM7-203ENST00000359895 TRIM41Q8WV44 630 aa30.14■■■□□ 2.42
PDLIM7-203ENST00000359895 CCDC88BA6NC98 1476 aa30.1■■■□□ 2.41
PDLIM7-203ENST00000359895 ATAD2BQ9ULI0 1458 aa29.96■■■□□ 2.39
PDLIM7-203ENST00000359895 CC2D2AQ9P2K1 1620 aa29.94■■■□□ 2.38
PDLIM7-203ENST00000359895 BAZ1BQ9UIG0 1483 aaKnown RBP29.85■■■□□ 2.37
PDLIM7-203ENST00000359895 LOC105371045A0A1W2PR82 267 aa29.83■■■□□ 2.37
PDLIM7-203ENST00000359895 ABCC8Q09428 1581 aa29.67■■■□□ 2.34
PDLIM7-203ENST00000359895 HMGXB3Q12766 1538 aa29.66■■■□□ 2.34
PDLIM7-203ENST00000359895 NCAPD3P42695 1498 aa29.6■■■□□ 2.33
PDLIM7-203ENST00000359895 FAM9AQ8IZU1 332 aaPredicted RBP29.57■■■□□ 2.32
PDLIM7-203ENST00000359895 WRNQ14191 1432 aaPredicted RBP eCLIP29.41■■■□□ 2.3
PDLIM7-203ENST00000359895 EEA1Q15075 1411 aa29.36■■■□□ 2.29
PDLIM7-203ENST00000359895 SYNJ1O43426 1573 aa29.28■■■□□ 2.28
PDLIM7-203ENST00000359895 SOGA1O94964 1423 aa29.2■■■□□ 2.27
PDLIM7-203ENST00000359895 PRDM2Q13029 1718 aa29.18■■■□□ 2.26
PDLIM7-203ENST00000359895 TOP2BQ02880 1626 aa29.15■■■□□ 2.26
PDLIM7-203ENST00000359895 BIVM-ERCC5R4GMW8 1640 aa29.14■■■□□ 2.25
PDLIM7-203ENST00000359895 PCGF6Q9BYE7 350 aa29.13■■■□□ 2.25
PDLIM7-203ENST00000359895 CFTRP13569 1480 aa29.11■■■□□ 2.25
PDLIM7-203ENST00000359895 EHMT2Q96KQ7 1210 aa29.1■■■□□ 2.25
PDLIM7-203ENST00000359895 CSRNP3Q8WYN3 585 aa29.08■■■□□ 2.25
PDLIM7-203ENST00000359895 RUSC2Q8N2Y8 1516 aa29.06■■■□□ 2.24
PDLIM7-203ENST00000359895 TRIM26Q12899 539 aaPredicted RBP29.04■■■□□ 2.24
PDLIM7-203ENST00000359895 TNIKQ9UKE5 1360 aa28.98■■■□□ 2.23
PDLIM7-203ENST00000359895 KIF21BO75037 1637 aa28.97■■■□□ 2.23
PDLIM7-203ENST00000359895 GOLGA3Q08378 1498 aa28.96■■■□□ 2.23
PDLIM7-203ENST00000359895 CEP164Q9UPV0 1460 aa28.91■■■□□ 2.22
PDLIM7-203ENST00000359895 CUX1P39880 1505 aa28.89■■■□□ 2.21
PDLIM7-203ENST00000359895 CADPSQ9ULU8 1353 aa28.88■■■□□ 2.21
PDLIM7-203ENST00000359895 CEP162Q5TB80 1403 aa28.85■■■□□ 2.21
PDLIM7-203ENST00000359895 HRCP23327 699 aa28.84■■■□□ 2.21
PDLIM7-203ENST00000359895 UBTFP17480 764 aaKnown RBP28.77■■■□□ 2.2
PDLIM7-203ENST00000359895 NESP48681 1621 aa28.73■■■□□ 2.19
PDLIM7-203ENST00000359895 ERICH3Q5RHP9 1530 aa28.64■■■□□ 2.18
PDLIM7-203ENST00000359895 LAMC3Q9Y6N6 1575 aa28.64■■■□□ 2.18
PDLIM7-203ENST00000359895 KIF27Q86VH2 1401 aa28.62■■■□□ 2.17
PDLIM7-203ENST00000359895 RAPGEF2Q9Y4G8 1499 aa28.6■■■□□ 2.17
PDLIM7-203ENST00000359895 FANCD2Q9BXW9 1451 aa28.58■■■□□ 2.17
PDLIM7-203ENST00000359895 PRXQ9BXM0 1461 aa28.56■■■□□ 2.16
PDLIM7-203ENST00000359895 CLIP1P30622 1438 aa28.49■■■□□ 2.15
PDLIM7-203ENST00000359895 DNMBPQ6XZF7 1577 aa28.48■■■□□ 2.15
PDLIM7-203ENST00000359895 FGD5Q6ZNL6 1462 aa28.47■■■□□ 2.15
PDLIM7-203ENST00000359895 KIF21AQ7Z4S6 1674 aa28.46■■■□□ 2.15
PDLIM7-203ENST00000359895 ERCC6Q03468 1493 aa28.45■■■□□ 2.15
PDLIM7-203ENST00000359895 CUX2O14529 1486 aa28.4■■■□□ 2.14
PDLIM7-203ENST00000359895 PDS5BQ9NTI5 1447 aa28.38■■■□□ 2.13
PDLIM7-203ENST00000359895 PPARGC1BQ86YN6 1023 aaKnown RBP28.37■■■□□ 2.13
PDLIM7-203ENST00000359895 TOPBP1Q92547 1522 aa28.35■■■□□ 2.13
PDLIM7-203ENST00000359895 VPS8Q8N3P4 1428 aa28.34■■■□□ 2.13
PDLIM7-203ENST00000359895 IGF1RP08069 1367 aa28.26■■■□□ 2.11
PDLIM7-203ENST00000359895 ZEB1P37275 1124 aaPredicted RBP28.25■■■□□ 2.11
PDLIM7-203ENST00000359895 ABCA10Q8WWZ4 1543 aa28.25■■■□□ 2.11
PDLIM7-203ENST00000359895 THOC2Q8NI27 1593 aaKnown RBP28.24■■■□□ 2.11
PDLIM7-203ENST00000359895 POLA1P09884 1462 aaPredicted RBP28.24■■■□□ 2.11
PDLIM7-203ENST00000359895 URB2Q14146 1524 aaKnown RBP28.18■■■□□ 2.1
PDLIM7-203ENST00000359895 WDR97A6NE52 1622 aa28.16■■■□□ 2.1
PDLIM7-203ENST00000359895 CARMIL1Q5VZK9 1371 aa28.16■■■□□ 2.1
PDLIM7-203ENST00000359895 ARAP1Q96P48 1450 aa28.14■■■□□ 2.09
PDLIM7-203ENST00000359895 RAD54L2Q9Y4B4 1467 aa28.14■■■□□ 2.09
PDLIM7-203ENST00000359895 MRC2Q9UBG0 1479 aa28.13■■■□□ 2.09
PDLIM7-203ENST00000359895 CUL7Q14999 1698 aa28.12■■■□□ 2.09
PDLIM7-203ENST00000359895 APLP2Q06481 763 aa28.1■■■□□ 2.09
PDLIM7-203ENST00000359895 RANGAP1P46060 587 aaPredicted RBP28.07■■■□□ 2.08
PDLIM7-203ENST00000359895 WDR62O43379 1518 aa28.05■■■□□ 2.08
PDLIM7-203ENST00000359895 TTBK1Q5TCY1 1321 aaPredicted RBP28.03■■■□□ 2.08
PDLIM7-203ENST00000359895 ARHGAP35Q9NRY4 1499 aa28.02■■■□□ 2.08
PDLIM7-203ENST00000359895 ABCA5Q8WWZ7 1642 aa28■■■□□ 2.07
PDLIM7-203ENST00000359895 CTTNBP2Q8WZ74 1663 aa27.93■■■□□ 2.06
PDLIM7-203ENST00000359895 TARBP1Q13395 1621 aaKnown RBP27.9■■■□□ 2.06
PDLIM7-203ENST00000359895 GAPVD1Q14C86 1478 aa27.87■■■□□ 2.05
PDLIM7-203ENST00000359895 EFCAB5A4FU69 1503 aa27.81■■■□□ 2.04
PDLIM7-203ENST00000359895 MAP3K1Q13233 1512 aa27.79■■■□□ 2.04
PDLIM7-203ENST00000359895 TDRD9Q8NDG6 1382 aaKnown RBP27.79■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms