Protein–RNA interactions for Protein: P23396

RPS3, 40S ribosomal protein S3, humanhuman

Known RBP eCLIP

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3P23396 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.293e-7■■■■□ 23.6
RPS3P23396 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.46■□□□□ 0.713e-7■■■■□ 23.6
RPS3P23396 RFC2-203ENST00000463194 853 ntTSL 318.93■□□□□ 0.623e-7■■■■□ 23.6
RPS3P23396 RFC2-207ENST00000480432 871 ntTSL 318.93■□□□□ 0.623e-7■■■■□ 23.6
RPS3P23396 RFC2-210ENST00000493156 782 ntTSL 518.93■□□□□ 0.623e-7■■■■□ 23.6
RPS3P23396 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.83■□□□□ 0.613e-7■■■■□ 23.6
RPS3P23396 RFC2-211ENST00000494019 730 ntTSL 39.91□□□□□ -0.823e-7■■■■□ 23.6
RPS3P23396 RFC2-205ENST00000473493 304 ntTSL 39.52□□□□□ -0.893e-7■■■■□ 23.6
RPS3P23396 RFC2-206ENST00000479105 957 ntTSL 58.85□□□□□ -0.993e-7■■■■□ 23.6
RPS3P23396 NUP107-205ENST00000535718 2655 ntTSL 1 (best)10.52□□□□□ -0.722e-6■■■■□ 23.6
RPS3P23396 NUP107-201ENST00000229179 6457 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.122e-6■■■■□ 23.6
RPS3P23396 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC6.57□□□□□ -1.362e-6■■■■□ 23.6
RPS3P23396 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.06□□□□□ -1.62e-6■■■■□ 23.6
RPS3P23396 CCT7-204ENST00000409924 567 ntTSL 319.61■□□□□ 0.734e-8■■■■□ 23.6
RPS3P23396 ALDOA-208ENST00000562679 906 ntTSL 514.04□□□□□ -0.167e-61■■■■□ 23.6
RPS3P23396 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.633e-7■■■■□ 23.6
RPS3P23396 SDC2-205ENST00000520233 563 ntTSL 417.59■□□□□ 0.411e-17■■■■□ 23.6
RPS3P23396 SDC2-203ENST00000519587 557 ntTSL 413.97□□□□□ -0.171e-17■■■■□ 23.6
RPS3P23396 NUCB1-207ENST00000452087 864 ntTSL 318.32■□□□□ 0.522e-7■■■■□ 23.6
RPS3P23396 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC14.3□□□□□ -0.121e-6■■■■□ 23.6
RPS3P23396 PCSK9-202ENST00000490692 3891 ntTSL 211.32□□□□□ -0.68e-13■■■■□ 23.6
RPS3P23396 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.595e-9■■■■□ 23.6
RPS3P23396 SLC38A2-213ENST00000553252 846 ntTSL 216.99■□□□□ 0.314e-15■■■■□ 23.6
RPS3P23396 WDR12-206ENST00000477723 706 ntTSL 315.53■□□□□ 0.085e-9■■■■□ 23.6
RPS3P23396 SLC38A2-210ENST00000551405 526 ntTSL 415.22■□□□□ 0.036e-21■■■■□ 23.6
RPS3P23396 PDHA1-205ENST00000417819 471 ntTSL 314.64□□□□□ -0.075e-9■■■■□ 23.6
RPS3P23396 CEP85-202ENST00000451429 4061 ntTSL 2 BASIC11.41□□□□□ -0.585e-9■■■■□ 23.6
RPS3P23396 PSMD4-207ENST00000461434 801 ntTSL 210.37□□□□□ -0.755e-9■■■■□ 23.6
RPS3P23396 CEP85-206ENST00000476272 3507 ntTSL 29.07□□□□□ -0.965e-9■■■■□ 23.6
RPS3P23396 DOCK1-206ENST00000623213 5761 ntTSL 1 (best) BASIC8.87□□□□□ -0.995e-9■■■■□ 23.6
RPS3P23396 DOCK1-201ENST00000280333 6797 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.075e-9■■■■□ 23.6
RPS3P23396 CEP85-209ENST00000640292 2286 ntAPPRIS ALT1 TSL 5 BASIC8.29□□□□□ -1.085e-9■■■■□ 23.6
RPS3P23396 HBBP1-201ENST00000433329 439 ntBASIC7.38□□□□□ -1.235e-9■■■■□ 23.6
RPS3P23396 CEP85-201ENST00000252992 3935 ntAPPRIS P3 TSL 1 (best) BASIC7.33□□□□□ -1.245e-9■■■■□ 23.6
RPS3P23396 CHURC1-207ENST00000556089 571 ntTSL 25.59□□□□□ -1.515e-9■■■■□ 23.6
RPS3P23396 PARP1-208ENST00000491816 416 ntTSL 25.06□□□□□ -1.65e-9■■■■□ 23.6
RPS3P23396 CHURC1-201ENST00000547625 326 ntTSL 3-2.47□□□□□ -2.85e-9■■■■□ 23.6
RPS3P23396 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.012e-12■■■■□ 23.6
RPS3P23396 ENO1-206ENST00000497492 647 ntTSL 212.01□□□□□ -0.491e-40■■■■□ 23.6
RPS3P23396 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC13.66□□□□□ -0.222e-6■■■■□ 23.6
RPS3P23396 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.175e-7■■■■□ 23.6
RPS3P23396 LMNA-216ENST00000496738 2405 ntTSL 216.69■□□□□ 0.266e-9■■■■□ 23.6
RPS3P23396 TCTN3-204ENST00000430368 1778 ntTSL 2 BASIC11.77□□□□□ -0.535e-10■■■■□ 23.5
RPS3P23396 TCTN3-201ENST00000265993 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.715e-10■■■■□ 23.5
RPS3P23396 TCTN3-202ENST00000371209 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.765e-10■■■■□ 23.5
RPS3P23396 TCTN3-206ENST00000497399 800 ntTSL 59.72□□□□□ -0.855e-10■■■■□ 23.5
RPS3P23396 TCTN3-203ENST00000371217 2514 ntAPPRIS P2 TSL 1 (best) BASIC9.64□□□□□ -0.875e-10■■■■□ 23.5
RPS3P23396 TCTN3-207ENST00000614499 2739 ntAPPRIS P2 TSL 1 (best) BASIC9.05□□□□□ -0.965e-10■■■■□ 23.5
RPS3P23396 TCTN3-205ENST00000478245 557 ntTSL 28.67□□□□□ -1.025e-10■■■■□ 23.5
RPS3P23396 MYL4-205ENST00000570772 582 ntTSL 39.61□□□□□ -0.879e-9■■■■□ 23.5
RPS3P23396 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.294e-8■■■■□ 23.5
RPS3P23396 ILVBL-206ENST00000533086 4248 ntTSL 210.84□□□□□ -0.674e-7■■■■□ 23.5
RPS3P23396 SERPINH1-203ENST00000525492 529 ntTSL 410.15□□□□□ -0.782e-8■■■■□ 23.5
RPS3P23396 EPCAM-203ENST00000419334 609 ntTSL 317.3■□□□□ 0.363e-11■■■■□ 23.5
RPS3P23396 NDUFB4-202ENST00000461682 821 ntTSL 314.91□□□□□ -0.022e-13■■■■□ 23.5
RPS3P23396 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.71■□□□□ 0.591e-10■■■■□ 23.5
RPS3P23396 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC17.97■□□□□ 0.471e-10■■■■□ 23.5
RPS3P23396 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC17.62■□□□□ 0.411e-10■■■■□ 23.5
RPS3P23396 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.381e-10■■■■□ 23.5
RPS3P23396 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.161e-10■■■■□ 23.5
RPS3P23396 SELENOF-205ENST00000469566 831 ntTSL 29.22□□□□□ -0.931e-10■■■■□ 23.5
RPS3P23396 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18.55■□□□□ 0.562e-8■■■■□ 23.5
RPS3P23396 ILVBL-202ENST00000524779 771 ntTSL 217.9■□□□□ 0.463e-10■■■■□ 23.5
RPS3P23396 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.011e-7■■■■□ 23.5
RPS3P23396 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.264e-8■■■■□ 23.5
RPS3P23396 CD63-209ENST00000550050 829 ntTSL 514.63□□□□□ -0.074e-8■■■■□ 23.5
RPS3P23396 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.194e-8■■■■□ 23.5
RPS3P23396 PSMA1-214ENST00000533331 575 ntTSL 42.72□□□□□ -1.972e-8■■■■□ 23.5
RPS3P23396 PHB-209ENST00000508009 451 ntTSL 56.87□□□□□ -1.313e-11■■■■□ 23.5
RPS3P23396 LOX-204ENST00000508067 561 ntTSL 42.39□□□□□ -2.031e-7■■■■□ 23.5
RPS3P23396 NDUFS1-209ENST00000457011 2171 ntTSL 2 BASIC9.49□□□□□ -0.891e-6■■■■□ 23.5
RPS3P23396 NDUFS1-203ENST00000432169 2080 ntTSL 2 BASIC9.42□□□□□ -0.91e-6■■■■□ 23.5
RPS3P23396 NDUFS1-202ENST00000423725 2631 ntTSL 2 BASIC9.35□□□□□ -0.911e-6■■■■□ 23.5
RPS3P23396 NDUFS1-204ENST00000440274 2394 ntTSL 2 BASIC7.57□□□□□ -1.21e-6■■■■□ 23.5
RPS3P23396 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.31e-6■■■■□ 23.5
RPS3P23396 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.391e-6■■■■□ 23.5
RPS3P23396 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.48□□□□□ -1.531e-6■■■■□ 23.5
RPS3P23396 PRDX2-204ENST00000477555 699 ntTSL 210.86□□□□□ -0.677e-8■■■■□ 23.5
RPS3P23396 SSR2-217ENST00000531917 555 ntTSL 514.44□□□□□ -0.19e-11■■■■□ 23.5
RPS3P23396 SSR2-206ENST00000472898 711 ntTSL 210.24□□□□□ -0.779e-11■■■■□ 23.5
RPS3P23396 SSR2-203ENST00000466905 666 ntTSL 58.89□□□□□ -0.999e-11■■■■□ 23.5
RPS3P23396 SSR2-208ENST00000474377 639 ntTSL 58.45□□□□□ -1.069e-11■■■■□ 23.5
RPS3P23396 SSR2-202ENST00000368311 5166 ntTSL 1 (best)8.12□□□□□ -1.119e-11■■■■□ 23.5
RPS3P23396 RETSAT-202ENST00000409984 765 ntTSL 212.54□□□□□ -0.44e-7■■■■□ 23.5
RPS3P23396 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.456e-8■■■■□ 23.5
RPS3P23396 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.89■□□□□ 0.456e-8■■■■□ 23.5
RPS3P23396 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.09■□□□□ 0.336e-8■■■■□ 23.5
RPS3P23396 COPE-202ENST00000349893 948 ntTSL 2 BASIC14.76□□□□□ -0.056e-8■■■■□ 23.5
RPS3P23396 SLC39A4-203ENST00000526658 583 ntTSL 319.16■□□□□ 0.664e-9■■■■□ 23.5
RPS3P23396 HSPA8-212ENST00000528292 1112 ntTSL 25.89□□□□□ -1.471e-10■■■■□ 23.5
RPS3P23396 CTSC-202ENST00000393301 598 ntTSL 211.86□□□□□ -0.515e-20■■■■□ 23.5
RPS3P23396 CTSC-209ENST00000534131 583 ntTSL 211.64□□□□□ -0.555e-20■■■■□ 23.5
RPS3P23396 CTSC-206ENST00000529974 747 ntTSL 1 (best) BASIC10.75□□□□□ -0.695e-20■■■■□ 23.5
RPS3P23396 CTSC-203ENST00000524463 6125 ntTSL 1 (best) BASIC9.93□□□□□ -0.825e-20■■■■□ 23.5
RPS3P23396 FKBP9-213ENST00000494374 1549 ntTSL 518.47■□□□□ 0.552e-7■■■■□ 23.4
RPS3P23396 FKBP9-204ENST00000464334 541 ntTSL 516.77■□□□□ 0.282e-7■■■■□ 23.4
RPS3P23396 FKBP9-206ENST00000469202 711 ntTSL 415.29■□□□□ 0.042e-7■■■■□ 23.4
RPS3P23396 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.052e-7■■■■□ 23.4
RPS3P23396 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC14.06□□□□□ -0.162e-7■■■■□ 23.4
RPS3P23396 IMPDH2-207ENST00000472328 469 ntTSL 317.15■□□□□ 0.343e-6■■■■□ 23.4
Retrieved 100 of 24,271 protein–RNA pairs in 225.4 ms