RNA–Protein interactions for RNA: ENST00000490692.1

PCSK9-202, Transcript of proprotein convertase subtilisin/kexin type 9, humanhuman

TSL 2

Gene PCSK9, Length 3,891 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCSK9-202ENST00000490692 NISCHQ9Y2I1 1504 aa21.1■□□□□ 0.97
PCSK9-202ENST00000490692 SUPT5HO00267 1087 aaKnown RBP19.21■□□□□ 0.67
PCSK9-202ENST00000490692 PCGF6Q9BYE7 350 aa19.05■□□□□ 0.64
PCSK9-202ENST00000490692 SHROOM4Q9ULL8 1493 aa18.98■□□□□ 0.63
PCSK9-202ENST00000490692 PELP1Q8IZL8 1130 aaKnown RBP18.9■□□□□ 0.62
PCSK9-202ENST00000490692 DCAF8L2P0C7V8 631 aa18.88■□□□□ 0.61
PCSK9-202ENST00000490692 HRCP23327 699 aa18.86■□□□□ 0.61
PCSK9-202ENST00000490692 PPARGC1BQ86YN6 1023 aaKnown RBP18.82■□□□□ 0.6
PCSK9-202ENST00000490692 MYT1Q01538 1121 aa18.53■□□□□ 0.56
PCSK9-202ENST00000490692 EHMT2Q96KQ7 1210 aa18.37■□□□□ 0.53
PCSK9-202ENST00000490692 LOC105371045A0A1W2PR82 267 aa18.09■□□□□ 0.49
PCSK9-202ENST00000490692 CHIC1Q5VXU3 224 aa18.07■□□□□ 0.48
PCSK9-202ENST00000490692 FAM9AQ8IZU1 332 aaPredicted RBP18■□□□□ 0.47
PCSK9-202ENST00000490692 ZEB1P37275 1124 aaPredicted RBP17.99■□□□□ 0.47
PCSK9-202ENST00000490692 TRIM26Q12899 539 aaPredicted RBP17.98■□□□□ 0.47
PCSK9-202ENST00000490692 CENPBP07199 599 aaPredicted RBP17.95■□□□□ 0.46
PCSK9-202ENST00000490692 SCAF1Q9H7N4 1312 aaKnown RBP17.93■□□□□ 0.46
PCSK9-202ENST00000490692 YTHDC1Q96MU7 727 aaKnown RBP17.89■□□□□ 0.45
PCSK9-202ENST00000490692 TTBK1Q5TCY1 1321 aaPredicted RBP17.88■□□□□ 0.45
PCSK9-202ENST00000490692 CCER1Q8TC90 406 aaPredicted RBP17.8■□□□□ 0.44
PCSK9-202ENST00000490692 GTF3C3Q9Y5Q9 886 aa17.77■□□□□ 0.43
PCSK9-202ENST00000490692 CCDC180Q9P1Z9 1646 aa17.73■□□□□ 0.43
PCSK9-202ENST00000490692 ZCCHC6Q5VYS8 1495 aaKnown RBP17.72■□□□□ 0.43
PCSK9-202ENST00000490692 MYO15BQ96JP2 1530 aa17.64■□□□□ 0.41
PCSK9-202ENST00000490692 ACIN1Q9UKV3 1341 aaKnown RBP17.61■□□□□ 0.41
PCSK9-202ENST00000490692 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.57■□□□□ 0.4
PCSK9-202ENST00000490692 NEUROD1Q13562 356 aa17.57■□□□□ 0.4
PCSK9-202ENST00000490692 DIEXFQ68CQ4 756 aaKnown RBP17.52■□□□□ 0.4
PCSK9-202ENST00000490692 TRIM41Q8WV44 630 aa17.52■□□□□ 0.39
PCSK9-202ENST00000490692 ABCC9O60706 1549 aa17.44■□□□□ 0.38
PCSK9-202ENST00000490692 PRKCSHP14314 528 aaPredicted RBP17.31■□□□□ 0.36
PCSK9-202ENST00000490692 DCAF1Q9Y4B6 1507 aa17.27■□□□□ 0.36
PCSK9-202ENST00000490692 BCL11AQ9H165 835 aa17.23■□□□□ 0.35
PCSK9-202ENST00000490692 ERICH6Q7L0X2 663 aa17.12■□□□□ 0.33
PCSK9-202ENST00000490692 SCRIBQ14160 1630 aa17.07■□□□□ 0.32
PCSK9-202ENST00000490692 RANGAP1P46060 587 aaPredicted RBP17.04■□□□□ 0.32
PCSK9-202ENST00000490692 BCANQ96GW7 911 aa17.03■□□□□ 0.32
PCSK9-202ENST00000490692 HNRNPUL2Q1KMD3 747 aaKnown RBP17.01■□□□□ 0.31
PCSK9-202ENST00000490692 ZNF316A6NFI3 1004 aaPredicted RBP16.98■□□□□ 0.31
PCSK9-202ENST00000490692 PABPN1Q86U42 306 aaKnown RBP eCLIP16.98■□□□□ 0.31
PCSK9-202ENST00000490692 APLP2Q06481 763 aa16.96■□□□□ 0.3
PCSK9-202ENST00000490692 UBTFP17480 764 aaKnown RBP16.93■□□□□ 0.3
PCSK9-202ENST00000490692 MIER1Q8N108 512 aa16.89■□□□□ 0.29
PCSK9-202ENST00000490692 NEFLP07196 543 aa16.88■□□□□ 0.29
PCSK9-202ENST00000490692 RSF1Q96T23 1441 aaPredicted RBP16.74■□□□□ 0.27
PCSK9-202ENST00000490692 ANP32EQ9BTT0 268 aa16.73■□□□□ 0.27
PCSK9-202ENST00000490692 CECR2Q9BXF3 1484 aa16.66■□□□□ 0.26
PCSK9-202ENST00000490692 NACADO15069 1562 aa16.63■□□□□ 0.25
PCSK9-202ENST00000490692 ITGAEP38570 1179 aa16.62■□□□□ 0.25
PCSK9-202ENST00000490692 FKBP8Q14318 412 aa16.59■□□□□ 0.25
PCSK9-202ENST00000490692 CSRNP3Q8WYN3 585 aa16.58■□□□□ 0.24
PCSK9-202ENST00000490692 SUPT16HQ9Y5B9 1047 aaKnown RBP16.56■□□□□ 0.24
PCSK9-202ENST00000490692 RB1CC1Q8TDY2 1594 aa16.52■□□□□ 0.23
PCSK9-202ENST00000490692 MROH2BQ7Z745 1585 aa16.49■□□□□ 0.23
PCSK9-202ENST00000490692 TSHZ2Q9NRE2 1034 aa16.46■□□□□ 0.23
PCSK9-202ENST00000490692 SLC24A1O60721 1099 aa16.42■□□□□ 0.22
PCSK9-202ENST00000490692 WIZO95785 1651 aa16.37■□□□□ 0.21
PCSK9-202ENST00000490692 CLSPNQ9HAW4 1339 aa16.37■□□□□ 0.21
PCSK9-202ENST00000490692 TRIM52Q96A61 297 aa16.36■□□□□ 0.21
PCSK9-202ENST00000490692 CDK11AQ9UQ88 783 aaPredicted RBP16.35■□□□□ 0.21
PCSK9-202ENST00000490692 CNGB1Q14028 1251 aaPredicted RBP16.34■□□□□ 0.21
PCSK9-202ENST00000490692 ATP1B4Q9UN42 357 aaPredicted RBP16.31■□□□□ 0.2
PCSK9-202ENST00000490692 IRX6P78412 446 aaPredicted RBP16.3■□□□□ 0.2
PCSK9-202ENST00000490692 NBR1Q14596 966 aa16.3■□□□□ 0.2
PCSK9-202ENST00000490692 RTL5Q5HYW3 569 aaPredicted RBP16.3■□□□□ 0.2
PCSK9-202ENST00000490692 DDX10Q13206 875 aaKnown RBP16.28■□□□□ 0.2
PCSK9-202ENST00000490692 RBM19Q9Y4C8 960 aaKnown RBP16.25■□□□□ 0.19
PCSK9-202ENST00000490692 BAZ1AQ9NRL2 1556 aaPredicted RBP16.23■□□□□ 0.19
PCSK9-202ENST00000490692 HIRIP3Q9BW71 556 aaPredicted RBP16.2■□□□□ 0.18
PCSK9-202ENST00000490692 ANP32CO43423 234 aa16.19■□□□□ 0.18
PCSK9-202ENST00000490692 EIF5BO60841 1220 aaKnown RBP16.18■□□□□ 0.18
PCSK9-202ENST00000490692 KCNH8Q96L42 1107 aa16.14■□□□□ 0.17
PCSK9-202ENST00000490692 RTN4Q9NQC3 1192 aaKnown RBP16.12■□□□□ 0.17
PCSK9-202ENST00000490692 ANO8Q9HCE9 1232 aaPredicted RBP16.12■□□□□ 0.17
PCSK9-202ENST00000490692 CCDC88BA6NC98 1476 aa16.1■□□□□ 0.17
PCSK9-202ENST00000490692 HNRNPUQ00839 825 aaKnown RBP eCLIP16.09■□□□□ 0.173e-7■■□□□ 11.4
PCSK9-202ENST00000490692 ABCC8Q09428 1581 aa16.09■□□□□ 0.17
PCSK9-202ENST00000490692 CEP162Q5TB80 1403 aa16.09■□□□□ 0.17
PCSK9-202ENST00000490692 POLR3GLQ9BT43 218 aa16.07■□□□□ 0.16
PCSK9-202ENST00000490692 SMARCA4P51532 1647 aa16.07■□□□□ 0.16
PCSK9-202ENST00000490692 DEKP35659 375 aaKnown RBP16.06■□□□□ 0.16
PCSK9-202ENST00000490692 NPM2Q86SE8 214 aaKnown RBP16.04■□□□□ 0.16
PCSK9-202ENST00000490692 FAM50AQ14320 339 aaKnown RBP16.02■□□□□ 0.16
PCSK9-202ENST00000490692 CCDC136Q96JN2 1154 aa16.01■□□□□ 0.15
PCSK9-202ENST00000490692 UNC13AQ9UPW8 1703 aa16.01■□□□□ 0.15
PCSK9-202ENST00000490692 TOP2AP11388 1531 aaKnown RBP16■□□□□ 0.15
PCSK9-202ENST00000490692 ANP32AP39687 249 aaKnown RBP15.96■□□□□ 0.15
PCSK9-202ENST00000490692 SOGA1O94964 1423 aa15.95■□□□□ 0.14
PCSK9-202ENST00000490692 DAXXQ9UER7 740 aaPredicted RBP15.95■□□□□ 0.14
PCSK9-202ENST00000490692 MYT1LQ9UL68 1186 aa15.94■□□□□ 0.14
PCSK9-202ENST00000490692 SMARCA2P51531 1590 aa15.92■□□□□ 0.14
PCSK9-202ENST00000490692 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.92■□□□□ 0.14
PCSK9-202ENST00000490692 BICRAQ9NZM4 1560 aa15.92■□□□□ 0.14
PCSK9-202ENST00000490692 FAM9BQ8IZU0 186 aa15.9■□□□□ 0.14
PCSK9-202ENST00000490692 SENP3-EIF4A1A0A087X0R7 540 aa15.9■□□□□ 0.14
PCSK9-202ENST00000490692 BAZ1BQ9UIG0 1483 aaKnown RBP15.89■□□□□ 0.13
PCSK9-202ENST00000490692 ZBTB47Q9UFB7 747 aaPredicted RBP15.87■□□□□ 0.13
PCSK9-202ENST00000490692 B4GALNT3Q6L9W6 998 aa15.87■□□□□ 0.13
PCSK9-202ENST00000490692 RUSC2Q8N2Y8 1516 aa15.85■□□□□ 0.13
PCSK9-202ENST00000490692 WRNQ14191 1432 aaPredicted RBP eCLIP15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms