Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.673e-7■■■□□ 19
SUB1P53999 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC19.04■□□□□ 0.643e-7■■■□□ 19
SUB1P53999 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.573e-7■■■□□ 19
SUB1P53999 RCCD1-208ENST00000557266 2110 ntTSL 1 (best)18.19■□□□□ 0.53e-7■■■□□ 19
SUB1P53999 SCARB2-212ENST00000638663 1922 ntTSL 517.3■□□□□ 0.363e-7■■■□□ 19
SUB1P53999 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.293e-7■■■□□ 19
SUB1P53999 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC16.81■□□□□ 0.283e-7■■■□□ 19
SUB1P53999 CDC34-205ENST00000606065 1062 ntTSL 516.7■□□□□ 0.263e-7■■■□□ 19
SUB1P53999 SCARB2-213ENST00000638680 5817 ntTSL 516.7■□□□□ 0.263e-7■■■□□ 19
SUB1P53999 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC16.29■□□□□ 0.23e-7■■■□□ 19
SUB1P53999 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.113e-7■■■□□ 19
SUB1P53999 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.093e-7■■■□□ 19
SUB1P53999 RCCD1-205ENST00000556333 735 ntTSL 1 (best)15.55■□□□□ 0.083e-7■■■□□ 19
SUB1P53999 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC15.45■□□□□ 0.063e-7■■■□□ 19
SUB1P53999 CDC34-206ENST00000606400 899 ntTSL 214.81□□□□□ -0.043e-7■■■□□ 19
SUB1P53999 RCCD1-204ENST00000555737 3157 ntTSL 1 (best)14.26□□□□□ -0.133e-7■■■□□ 19
SUB1P53999 CDC34-202ENST00000586283 1147 ntTSL 313.95□□□□□ -0.183e-7■■■□□ 19
SUB1P53999 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.243e-7■■■□□ 19
SUB1P53999 ITGA5-213ENST00000553071 1013 ntTSL 1 (best)13.48□□□□□ -0.253e-7■■■□□ 19
SUB1P53999 LSM14A-208ENST00000590416 699 ntTSL 213□□□□□ -0.333e-7■■■□□ 19
SUB1P53999 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.383e-7■■■□□ 19
SUB1P53999 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.393e-7■■■□□ 19
SUB1P53999 SCARB2-208ENST00000638372 4811 ntTSL 512.62□□□□□ -0.393e-7■■■□□ 19
SUB1P53999 SCARB2-216ENST00000639300 4554 ntTSL 512.57□□□□□ -0.43e-7■■■□□ 19
SUB1P53999 CCNG1-204ENST00000506186 580 ntTSL 212.3□□□□□ -0.442e-13■■■□□ 19
SUB1P53999 SCARB2-215ENST00000639145 4471 ntAPPRIS ALT1 TSL 5 BASIC11.96□□□□□ -0.53e-7■■■□□ 19
SUB1P53999 SCARB2-221ENST00000640341 3403 ntTSL 511.77□□□□□ -0.533e-7■■■□□ 19
SUB1P53999 USP24-201ENST00000294383 10549 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.583e-7■■■□□ 19
SUB1P53999 HSPG2-214ENST00000635682 921 ntTSL 511.39□□□□□ -0.592e-10■■■□□ 19
SUB1P53999 ITGA5-201ENST00000293379 4444 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.593e-7■■■□□ 19
SUB1P53999 ITGA5-202ENST00000435631 1240 ntTSL 211.35□□□□□ -0.593e-7■■■□□ 19
SUB1P53999 RCCD1-207ENST00000556774 139 ntTSL 311.32□□□□□ -0.63e-7■■■□□ 19
SUB1P53999 LSM14A-203ENST00000544216 3596 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.613e-7■■■□□ 19
SUB1P53999 LSM14A-201ENST00000433627 3424 ntAPPRIS ALT1 TSL 1 (best) BASIC11.06□□□□□ -0.643e-7■■■□□ 19
SUB1P53999 XPO7-202ENST00000433566 4519 ntTSL 5 BASIC9.92□□□□□ -0.823e-7■■■□□ 19
SUB1P53999 SCARB2-202ENST00000452464 1495 ntTSL 2 BASIC8.74□□□□□ -1.013e-7■■■□□ 19
SUB1P53999 LSM14A-206ENST00000588582 3601 ntTSL 28.56□□□□□ -1.043e-7■■■□□ 19
SUB1P53999 SCARB2-225ENST00000640900 531 ntTSL 27.08□□□□□ -1.283e-7■■■□□ 19
SUB1P53999 SCARB2-211ENST00000638603 4284 ntTSL 5 BASIC6.68□□□□□ -1.343e-7■■■□□ 19
SUB1P53999 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC5.97□□□□□ -1.453e-7■■■□□ 19
SUB1P53999 SCARB2-224ENST00000640880 554 ntTSL 44.93□□□□□ -1.623e-7■■■□□ 19
SUB1P53999 SCARB2-218ENST00000639715 4355 ntTSL 54.78□□□□□ -1.643e-7■■■□□ 19
SUB1P53999 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC13.01□□□□□ -0.332e-7■■■□□ 18.9
SUB1P53999 G3BP1-208ENST00000520177 2700 ntTSL 1 (best)11.95□□□□□ -0.51e-6■■■□□ 18.9
SUB1P53999 G3BP1-201ENST00000356245 2803 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.861e-6■■■□□ 18.9
SUB1P53999 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.571e-6■■■□□ 18.9
SUB1P53999 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.421e-12■■■□□ 18.9
SUB1P53999 NPM1-204ENST00000517671 1338 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.511e-12■■■□□ 18.9
SUB1P53999 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC4.31□□□□□ -1.721e-12■■■□□ 18.9
SUB1P53999 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.513e-7■■■□□ 18.9
SUB1P53999 PSMA1-211ENST00000531156 574 ntTSL 47.24□□□□□ -1.252e-23■■■□□ 18.9
SUB1P53999 PSMA1-204ENST00000526443 569 ntTSL 25.09□□□□□ -1.592e-23■■■□□ 18.9
SUB1P53999 PSMA1-214ENST00000533331 575 ntTSL 42.9□□□□□ -1.952e-23■■■□□ 18.9
SUB1P53999 PSMA1-208ENST00000529524 743 ntTSL 32.12□□□□□ -2.072e-23■■■□□ 18.9
SUB1P53999 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.141e-6■■■□□ 18.9
SUB1P53999 WDR18-210ENST00000591997 577 ntTSL 314.83□□□□□ -0.041e-6■■■□□ 18.9
SUB1P53999 WDR18-209ENST00000591985 1498 ntTSL 514.61□□□□□ -0.071e-6■■■□□ 18.9
SUB1P53999 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.131e-6■■■□□ 18.9
SUB1P53999 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC13.31□□□□□ -0.281e-6■■■□□ 18.9
SUB1P53999 WDR18-211ENST00000607440 1397 ntTSL 512.85□□□□□ -0.351e-6■■■□□ 18.9
SUB1P53999 WDR18-201ENST00000251289 1501 ntTSL 511.85□□□□□ -0.511e-6■■■□□ 18.9
SUB1P53999 WDR18-205ENST00000590354 678 ntTSL 211.57□□□□□ -0.561e-6■■■□□ 18.9
SUB1P53999 WDR18-207ENST00000591155 417 ntTSL 211.11□□□□□ -0.631e-6■■■□□ 18.9
SUB1P53999 XRCC5-209ENST00000485763 616 ntTSL 25.23□□□□□ -1.572e-10■■■□□ 18.9
SUB1P53999 XRCC5-206ENST00000460284 2962 ntTSL 1 (best)4.67□□□□□ -1.662e-10■■■□□ 18.9
SUB1P53999 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.415e-17■■■□□ 18.9
SUB1P53999 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.475e-17■■■□□ 18.9
SUB1P53999 FKBP5-202ENST00000536438 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.565e-17■■■□□ 18.9
SUB1P53999 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC16.67■□□□□ 0.263e-23■■■□□ 18.9
SUB1P53999 LRRC75A-AS1-224ENST00000581718 574 ntTSL 214.84□□□□□ -0.033e-23■■■□□ 18.9
SUB1P53999 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC14.84□□□□□ -0.033e-23■■■□□ 18.9
SUB1P53999 LRRC75A-AS1-229ENST00000584177 574 ntTSL 412.78□□□□□ -0.363e-23■■■□□ 18.9
SUB1P53999 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC10.76□□□□□ -0.693e-23■■■□□ 18.9
SUB1P53999 LRRC75A-AS1-217ENST00000497774 1662 ntTSL 510.54□□□□□ -0.723e-23■■■□□ 18.9
SUB1P53999 LRRC75A-AS1-206ENST00000477249 891 ntTSL 59.46□□□□□ -0.93e-23■■■□□ 18.9
SUB1P53999 LRRC75A-AS1-227ENST00000583400 712 ntTSL 47.51□□□□□ -1.213e-23■■■□□ 18.9
SUB1P53999 LRRC75A-AS1-223ENST00000581361 843 ntTSL 1 (best) BASIC7.41□□□□□ -1.223e-23■■■□□ 18.9
SUB1P53999 LRRC75A-AS1-222ENST00000580770 572 ntTSL 47.02□□□□□ -1.293e-23■■■□□ 18.9
SUB1P53999 LRRC75A-AS1-220ENST00000579473 585 ntTSL 4 BASIC5.6□□□□□ -1.513e-23■■■□□ 18.9
SUB1P53999 LRRC75A-AS1-210ENST00000481898 993 ntTSL 1 (best)4.72□□□□□ -1.653e-23■■■□□ 18.9
SUB1P53999 HNRNPU-209ENST00000476241 4844 ntTSL 514.29□□□□□ -0.122e-13■■■□□ 18.9
SUB1P53999 HNRNPU-224ENST00000640056 2045 ntTSL 58.04□□□□□ -1.122e-13■■■□□ 18.9
SUB1P53999 HNRNPU-218ENST00000639064 2625 ntTSL 57.13□□□□□ -1.272e-13■■■□□ 18.9
SUB1P53999 HNRNPU-207ENST00000468690 5273 ntTSL 56.84□□□□□ -1.312e-13■■■□□ 18.9
SUB1P53999 HNRNPU-223ENST00000640001 4227 ntTSL 5 BASIC6.44□□□□□ -1.382e-13■■■□□ 18.9
SUB1P53999 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.572e-6■■■□□ 18.9
SUB1P53999 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.452e-6■■■□□ 18.9
SUB1P53999 AKT1-205ENST00000553506 2830 ntTSL 215.69■□□□□ 0.12e-6■■■□□ 18.9
SUB1P53999 AKT1-218ENST00000557552 8396 ntTSL 515.39■□□□□ 0.052e-6■■■□□ 18.9
SUB1P53999 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.332e-6■■■□□ 18.9
SUB1P53999 AKT1-219ENST00000610370 3187 ntTSL 211.02□□□□□ -0.652e-6■■■□□ 18.9
SUB1P53999 AKT1-208ENST00000554581 3916 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.772e-6■■■□□ 18.9
SUB1P53999 AKT1-213ENST00000555458 705 ntTSL 210.11□□□□□ -0.792e-6■■■□□ 18.9
SUB1P53999 AKT1-202ENST00000402615 3913 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.862e-6■■■□□ 18.9
SUB1P53999 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC21.84■■□□□ 1.093e-7■■■□□ 18.9
SUB1P53999 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC21.49■■□□□ 1.033e-7■■■□□ 18.9
SUB1P53999 LARP4B-212ENST00000614908 1826 ntTSL 416.53■□□□□ 0.243e-7■■■□□ 18.9
SUB1P53999 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.073e-7■■■□□ 18.9
SUB1P53999 TBC1D7-208ENST00000421203 1544 ntTSL 214.97□□□□□ -0.013e-7■■■□□ 18.9
SUB1P53999 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.043e-7■■■□□ 18.9
Retrieved 100 of 11,644 protein–RNA pairs in 123.5 ms