RNA–Protein interactions for RNA: ENST00000638680.1

SCARB2-213, Transcript of scavenger receptor class B member 2, humanhuman

TSL 5

Gene SCARB2, Length 5,817 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB2-213ENST00000638680 DCAF8L2P0C7V8 631 aa31.38■■■□□ 2.61
SCARB2-213ENST00000638680 SUPT5HO00267 1087 aaKnown RBP30.32■■■□□ 2.44
SCARB2-213ENST00000638680 SHROOM4Q9ULL8 1493 aa29.64■■■□□ 2.34
SCARB2-213ENST00000638680 NISCHQ9Y2I1 1504 aa29.62■■■□□ 2.33
SCARB2-213ENST00000638680 EHMT2Q96KQ7 1210 aa29.49■■■□□ 2.31
SCARB2-213ENST00000638680 PELP1Q8IZL8 1130 aaKnown RBP29.42■■■□□ 2.3
SCARB2-213ENST00000638680 PCGF6Q9BYE7 350 aa28.87■■■□□ 2.21
SCARB2-213ENST00000638680 APLP2Q06481 763 aa28.77■■■□□ 2.2
SCARB2-213ENST00000638680 FAM9AQ8IZU1 332 aaPredicted RBP28.64■■■□□ 2.18
SCARB2-213ENST00000638680 TTBK1Q5TCY1 1321 aaPredicted RBP28.59■■■□□ 2.17
SCARB2-213ENST00000638680 CENPBP07199 599 aaPredicted RBP28.48■■■□□ 2.15
SCARB2-213ENST00000638680 ZEB1P37275 1124 aaPredicted RBP28.35■■■□□ 2.13
SCARB2-213ENST00000638680 ERICH6Q7L0X2 663 aa28.32■■■□□ 2.12
SCARB2-213ENST00000638680 CCER1Q8TC90 406 aaPredicted RBP28.21■■■□□ 2.11
SCARB2-213ENST00000638680 RANGAP1P46060 587 aaPredicted RBP28.01■■■□□ 2.07
SCARB2-213ENST00000638680 TRIM41Q8WV44 630 aa27.98■■■□□ 2.07
SCARB2-213ENST00000638680 YTHDC1Q96MU7 727 aaKnown RBP27.92■■■□□ 2.06
SCARB2-213ENST00000638680 MYT1Q01538 1121 aa27.89■■■□□ 2.06
SCARB2-213ENST00000638680 NEFLP07196 543 aa27.74■■■□□ 2.03
SCARB2-213ENST00000638680 ATP1B4Q9UN42 357 aaPredicted RBP27.66■■■□□ 2.02
SCARB2-213ENST00000638680 UBTFP17480 764 aaKnown RBP27.65■■■□□ 2.02
SCARB2-213ENST00000638680 PPARGC1BQ86YN6 1023 aaKnown RBP27.56■■■□□ 2
SCARB2-213ENST00000638680 HRCP23327 699 aa27.5■■□□□ 1.99
SCARB2-213ENST00000638680 TRIM26Q12899 539 aaPredicted RBP27.49■■□□□ 1.99
SCARB2-213ENST00000638680 LOC105371045A0A1W2PR82 267 aa27.06■■□□□ 1.92
SCARB2-213ENST00000638680 ITGAEP38570 1179 aa26.94■■□□□ 1.9
SCARB2-213ENST00000638680 DAXXQ9UER7 740 aaPredicted RBP26.93■■□□□ 1.9
SCARB2-213ENST00000638680 CHIC1Q5VXU3 224 aa26.89■■□□□ 1.9
SCARB2-213ENST00000638680 HNRNPUL2Q1KMD3 747 aaKnown RBP26.85■■□□□ 1.89
SCARB2-213ENST00000638680 POLR3GLQ9BT43 218 aa26.82■■□□□ 1.88
SCARB2-213ENST00000638680 DIEXFQ68CQ4 756 aaKnown RBP26.73■■□□□ 1.87
SCARB2-213ENST00000638680 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.71■■□□□ 1.87
SCARB2-213ENST00000638680 CNGB1Q14028 1251 aaPredicted RBP26.66■■□□□ 1.86
SCARB2-213ENST00000638680 RTL5Q5HYW3 569 aaPredicted RBP26.5■■□□□ 1.83
SCARB2-213ENST00000638680 GTF3C3Q9Y5Q9 886 aa26.43■■□□□ 1.82
SCARB2-213ENST00000638680 MYT1LQ9UL68 1186 aa26.38■■□□□ 1.81
SCARB2-213ENST00000638680 ZNF316A6NFI3 1004 aaPredicted RBP26.36■■□□□ 1.81
SCARB2-213ENST00000638680 BCANQ96GW7 911 aa26.32■■□□□ 1.8
SCARB2-213ENST00000638680 CLSPNQ9HAW4 1339 aa26.26■■□□□ 1.79
SCARB2-213ENST00000638680 FAM50AQ14320 339 aaKnown RBP26.16■■□□□ 1.78
SCARB2-213ENST00000638680 SLC4A1APQ9BWU0 796 aaKnown RBP26.14■■□□□ 1.77
SCARB2-213ENST00000638680 NEUROD1Q13562 356 aa26.13■■□□□ 1.77
SCARB2-213ENST00000638680 CDK11AQ9UQ88 783 aaPredicted RBP26.04■■□□□ 1.76
SCARB2-213ENST00000638680 TRIM52Q96A61 297 aa26.01■■□□□ 1.75
SCARB2-213ENST00000638680 ANP32CO43423 234 aa26■■□□□ 1.75
SCARB2-213ENST00000638680 ACIN1Q9UKV3 1341 aaKnown RBP26■■□□□ 1.75
SCARB2-213ENST00000638680 ZNF326Q5BKZ1 582 aaKnown RBP25.78■■□□□ 1.72
SCARB2-213ENST00000638680 ANP32AP39687 249 aaKnown RBP25.61■■□□□ 1.69
SCARB2-213ENST00000638680 ZBTB47Q9UFB7 747 aaPredicted RBP25.55■■□□□ 1.68
SCARB2-213ENST00000638680 CANXP27824 592 aaKnown RBP25.55■■□□□ 1.68
SCARB2-213ENST00000638680 NPM2Q86SE8 214 aaKnown RBP25.52■■□□□ 1.68
SCARB2-213ENST00000638680 FKBP8Q14318 412 aa25.51■■□□□ 1.67
SCARB2-213ENST00000638680 PABPN1Q86U42 306 aaKnown RBP eCLIP25.46■■□□□ 1.67
SCARB2-213ENST00000638680 BCL11AQ9H165 835 aa25.46■■□□□ 1.67
SCARB2-213ENST00000638680 CSRNP3Q8WYN3 585 aa25.35■■□□□ 1.65
SCARB2-213ENST00000638680 P3H3Q8IVL6 736 aa25.34■■□□□ 1.65
SCARB2-213ENST00000638680 EIF5BO60841 1220 aaKnown RBP25.32■■□□□ 1.64
SCARB2-213ENST00000638680 DCAF1Q9Y4B6 1507 aa25.27■■□□□ 1.64
SCARB2-213ENST00000638680 ABCC9O60706 1549 aa25.27■■□□□ 1.64
SCARB2-213ENST00000638680 HNRNPUQ00839 825 aaKnown RBP eCLIP25.26■■□□□ 1.63
SCARB2-213ENST00000638680 SCAF1Q9H7N4 1312 aaKnown RBP25.25■■□□□ 1.63
SCARB2-213ENST00000638680 ARID3CA6NKF2 412 aa25.24■■□□□ 1.63
SCARB2-213ENST00000638680 SLC24A1O60721 1099 aa25.22■■□□□ 1.63
SCARB2-213ENST00000638680 DDX10Q13206 875 aaKnown RBP25.21■■□□□ 1.63
SCARB2-213ENST00000638680 NEFMP07197 916 aa25.19■■□□□ 1.62
SCARB2-213ENST00000638680 FAM9BQ8IZU0 186 aa25.17■■□□□ 1.62
SCARB2-213ENST00000638680 TONSLQ96HA7 1378 aa25.16■■□□□ 1.62
SCARB2-213ENST00000638680 FBLN2P98095 1184 aa25.15■■□□□ 1.62
SCARB2-213ENST00000638680 NBR1Q14596 966 aa25.13■■□□□ 1.61
SCARB2-213ENST00000638680 ZNF777Q9ULD5 760 aaPredicted RBP25.1■■□□□ 1.61
SCARB2-213ENST00000638680 ANP32BQ92688 251 aaKnown RBP25.1■■□□□ 1.61
SCARB2-213ENST00000638680 HSP90AA1P07900 732 aaKnown RBP25.04■■□□□ 1.6
SCARB2-213ENST00000638680 MIER1Q8N108 512 aa25.03■■□□□ 1.6
SCARB2-213ENST00000638680 CCDC136Q96JN2 1154 aa25.02■■□□□ 1.6
SCARB2-213ENST00000638680 SALL2Q9Y467 1007 aaPredicted RBP25.02■■□□□ 1.6
SCARB2-213ENST00000638680 UPF2Q9HAU5 1272 aaKnown RBP25.01■■□□□ 1.59
SCARB2-213ENST00000638680 IRX6P78412 446 aaPredicted RBP24.93■■□□□ 1.58
SCARB2-213ENST00000638680 GLIPR1L2Q4G1C9 344 aa24.91■■□□□ 1.58
SCARB2-213ENST00000638680 TMC1Q8TDI8 760 aa24.88■■□□□ 1.57
SCARB2-213ENST00000638680 ARXQ96QS3 562 aa24.87■■□□□ 1.57
SCARB2-213ENST00000638680 MRS2Q9HD23 443 aa24.85■■□□□ 1.57
SCARB2-213ENST00000638680 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.78■■□□□ 1.56
SCARB2-213ENST00000638680 HIRIP3Q9BW71 556 aaPredicted RBP24.78■■□□□ 1.56
SCARB2-213ENST00000638680 CHIC2Q9UKJ5 165 aa24.78■■□□□ 1.56
SCARB2-213ENST00000638680 CHGAP10645 457 aaKnown RBP24.73■■□□□ 1.55
SCARB2-213ENST00000638680 WDR43Q15061 677 aaKnown RBP eCLIP24.71■■□□□ 1.55
SCARB2-213ENST00000638680 SCRIBQ14160 1630 aa24.69■■□□□ 1.54
SCARB2-213ENST00000638680 MYO15BQ96JP2 1530 aa24.65■■□□□ 1.54
SCARB2-213ENST00000638680 ANP32EQ9BTT0 268 aa24.65■■□□□ 1.54
SCARB2-213ENST00000638680 KDM2AQ9Y2K7 1162 aa24.62■■□□□ 1.53
SCARB2-213ENST00000638680 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.58■■□□□ 1.53
SCARB2-213ENST00000638680 DDRGK1Q96HY6 314 aa24.56■■□□□ 1.52
SCARB2-213ENST00000638680 EIF4G2P78344 907 aaKnown RBP eCLIP24.55■■□□□ 1.52
SCARB2-213ENST00000638680 STAG3Q9UJ98 1225 aa24.54■■□□□ 1.52
SCARB2-213ENST00000638680 ZCCHC6Q5VYS8 1495 aaKnown RBP24.54■■□□□ 1.52
SCARB2-213ENST00000638680 CLIP1P30622 1438 aa24.53■■□□□ 1.52
SCARB2-213ENST00000638680 MTUS2Q5JR59 1369 aa24.48■■□□□ 1.51
SCARB2-213ENST00000638680 BECN1Q14457 450 aa24.48■■□□□ 1.51
SCARB2-213ENST00000638680 SUPT16HQ9Y5B9 1047 aaKnown RBP24.47■■□□□ 1.51
SCARB2-213ENST00000638680 CCDC180Q9P1Z9 1646 aa24.45■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms