RNA–Protein interactions for RNA: ENST00000639300.1

SCARB2-216, Transcript of scavenger receptor class B member 2, humanhuman

TSL 5

Gene SCARB2, Length 4,554 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB2-216ENST00000639300 NISCHQ9Y2I1 1504 aa25.45■■□□□ 1.66
SCARB2-216ENST00000639300 DCAF8L2P0C7V8 631 aa25.43■■□□□ 1.66
SCARB2-216ENST00000639300 SUPT5HO00267 1087 aaKnown RBP24.54■■□□□ 1.52
SCARB2-216ENST00000639300 SHROOM4Q9ULL8 1493 aa24.31■■□□□ 1.48
SCARB2-216ENST00000639300 EHMT2Q96KQ7 1210 aa23.53■■□□□ 1.36
SCARB2-216ENST00000639300 FAM9AQ8IZU1 332 aaPredicted RBP23.08■■□□□ 1.28
SCARB2-216ENST00000639300 PCGF6Q9BYE7 350 aa22.97■■□□□ 1.27
SCARB2-216ENST00000639300 TTBK1Q5TCY1 1321 aaPredicted RBP22.7■■□□□ 1.22
SCARB2-216ENST00000639300 TRIM41Q8WV44 630 aa22.62■■□□□ 1.21
SCARB2-216ENST00000639300 APLP2Q06481 763 aa22.51■■□□□ 1.19
SCARB2-216ENST00000639300 RANGAP1P46060 587 aaPredicted RBP22.39■■□□□ 1.17
SCARB2-216ENST00000639300 CHIC1Q5VXU3 224 aa22.26■■□□□ 1.15
SCARB2-216ENST00000639300 PPARGC1BQ86YN6 1023 aaKnown RBP22.22■■□□□ 1.15
SCARB2-216ENST00000639300 LOC105371045A0A1W2PR82 267 aa22.22■■□□□ 1.15
SCARB2-216ENST00000639300 CCER1Q8TC90 406 aaPredicted RBP22.18■■□□□ 1.14
SCARB2-216ENST00000639300 UBTFP17480 764 aaKnown RBP22.17■■□□□ 1.14
SCARB2-216ENST00000639300 ZEB1P37275 1124 aaPredicted RBP22.08■■□□□ 1.13
SCARB2-216ENST00000639300 TRIM26Q12899 539 aaPredicted RBP21.96■■□□□ 1.11
SCARB2-216ENST00000639300 HRCP23327 699 aa21.94■■□□□ 1.1
SCARB2-216ENST00000639300 ATP1B4Q9UN42 357 aaPredicted RBP21.91■■□□□ 1.1
SCARB2-216ENST00000639300 PELP1Q8IZL8 1130 aaKnown RBP21.83■■□□□ 1.08
SCARB2-216ENST00000639300 CENPBP07199 599 aaPredicted RBP21.78■■□□□ 1.08
SCARB2-216ENST00000639300 YTHDC1Q96MU7 727 aaKnown RBP21.64■■□□□ 1.06
SCARB2-216ENST00000639300 ABCC9O60706 1549 aa21.55■■□□□ 1.04
SCARB2-216ENST00000639300 HNRNPUL2Q1KMD3 747 aaKnown RBP21.51■■□□□ 1.03
SCARB2-216ENST00000639300 ITGAEP38570 1179 aa21.48■■□□□ 1.03
SCARB2-216ENST00000639300 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.45■■□□□ 1.02
SCARB2-216ENST00000639300 PABPN1Q86U42 306 aaKnown RBP eCLIP21.45■■□□□ 1.02
SCARB2-216ENST00000639300 ZCCHC6Q5VYS8 1495 aaKnown RBP21.12■□□□□ 0.97
SCARB2-216ENST00000639300 NEFLP07196 543 aa21.11■□□□□ 0.97
SCARB2-216ENST00000639300 DIEXFQ68CQ4 756 aaKnown RBP21.09■□□□□ 0.97
SCARB2-216ENST00000639300 ERICH6Q7L0X2 663 aa20.99■□□□□ 0.95
SCARB2-216ENST00000639300 POLR3GLQ9BT43 218 aa20.93■□□□□ 0.94
SCARB2-216ENST00000639300 CNGB1Q14028 1251 aaPredicted RBP20.92■□□□□ 0.94
SCARB2-216ENST00000639300 CSRNP3Q8WYN3 585 aa20.92■□□□□ 0.94
SCARB2-216ENST00000639300 FAM50AQ14320 339 aaKnown RBP20.9■□□□□ 0.94
SCARB2-216ENST00000639300 SCRIBQ14160 1630 aa20.85■□□□□ 0.93
SCARB2-216ENST00000639300 NEUROD1Q13562 356 aa20.78■□□□□ 0.92
SCARB2-216ENST00000639300 MYO15BQ96JP2 1530 aa20.71■□□□□ 0.91
SCARB2-216ENST00000639300 P3H3Q8IVL6 736 aa20.69■□□□□ 0.9
SCARB2-216ENST00000639300 MYT1LQ9UL68 1186 aa20.69■□□□□ 0.9
SCARB2-216ENST00000639300 GTF3C3Q9Y5Q9 886 aa20.68■□□□□ 0.9
SCARB2-216ENST00000639300 ZNF316A6NFI3 1004 aaPredicted RBP20.65■□□□□ 0.9
SCARB2-216ENST00000639300 DCAF1Q9Y4B6 1507 aa20.64■□□□□ 0.89
SCARB2-216ENST00000639300 TRIM52Q96A61 297 aa20.63■□□□□ 0.89
SCARB2-216ENST00000639300 CCDC180Q9P1Z9 1646 aa20.62■□□□□ 0.89
SCARB2-216ENST00000639300 RSF1Q96T23 1441 aaPredicted RBP20.52■□□□□ 0.87
SCARB2-216ENST00000639300 ARID3CA6NKF2 412 aa20.51■□□□□ 0.87
SCARB2-216ENST00000639300 BCANQ96GW7 911 aa20.47■□□□□ 0.87
SCARB2-216ENST00000639300 ACIN1Q9UKV3 1341 aaKnown RBP20.45■□□□□ 0.86
SCARB2-216ENST00000639300 FBLN2P98095 1184 aa20.45■□□□□ 0.86
SCARB2-216ENST00000639300 ZNF326Q5BKZ1 582 aaKnown RBP20.41■□□□□ 0.86
SCARB2-216ENST00000639300 MYT1Q01538 1121 aa20.41■□□□□ 0.86
SCARB2-216ENST00000639300 ANP32CO43423 234 aa20.36■□□□□ 0.85
SCARB2-216ENST00000639300 SLC4A1APQ9BWU0 796 aaKnown RBP20.27■□□□□ 0.84
SCARB2-216ENST00000639300 ZNF777Q9ULD5 760 aaPredicted RBP20.19■□□□□ 0.82
SCARB2-216ENST00000639300 DAXXQ9UER7 740 aaPredicted RBP20.19■□□□□ 0.82
SCARB2-216ENST00000639300 CECR2Q9BXF3 1484 aa20.17■□□□□ 0.82
SCARB2-216ENST00000639300 CLIP1P30622 1438 aa20.17■□□□□ 0.82
SCARB2-216ENST00000639300 DDX10Q13206 875 aaKnown RBP20.16■□□□□ 0.82
SCARB2-216ENST00000639300 CEP162Q5TB80 1403 aa20.13■□□□□ 0.81
SCARB2-216ENST00000639300 MIER1Q8N108 512 aa20.1■□□□□ 0.81
SCARB2-216ENST00000639300 CHIC2Q9UKJ5 165 aa20.09■□□□□ 0.81
SCARB2-216ENST00000639300 RB1CC1Q8TDY2 1594 aa20.06■□□□□ 0.8
SCARB2-216ENST00000639300 SCAF1Q9H7N4 1312 aaKnown RBP20.06■□□□□ 0.8
SCARB2-216ENST00000639300 TONSLQ96HA7 1378 aa20.05■□□□□ 0.8
SCARB2-216ENST00000639300 HIRIP3Q9BW71 556 aaPredicted RBP20.04■□□□□ 0.8
SCARB2-216ENST00000639300 WRNQ14191 1432 aaPredicted RBP eCLIP20.04■□□□□ 0.8
SCARB2-216ENST00000639300 CDK11AQ9UQ88 783 aaPredicted RBP20.01■□□□□ 0.79
SCARB2-216ENST00000639300 CLSPNQ9HAW4 1339 aa20.01■□□□□ 0.79
SCARB2-216ENST00000639300 NACADO15069 1562 aa20.01■□□□□ 0.79
SCARB2-216ENST00000639300 GOLGA3Q08378 1498 aa19.97■□□□□ 0.79
SCARB2-216ENST00000639300 EEA1Q15075 1411 aa19.97■□□□□ 0.79
SCARB2-216ENST00000639300 FKBP8Q14318 412 aa19.97■□□□□ 0.79
SCARB2-216ENST00000639300 TNIKQ9UKE5 1360 aa19.96■□□□□ 0.79
SCARB2-216ENST00000639300 HNRNPUQ00839 825 aaKnown RBP eCLIP19.93■□□□□ 0.78
SCARB2-216ENST00000639300 MTUS2Q5JR59 1369 aa19.9■□□□□ 0.78
SCARB2-216ENST00000639300 SOGA1O94964 1423 aa19.9■□□□□ 0.78
SCARB2-216ENST00000639300 RTL5Q5HYW3 569 aaPredicted RBP19.88■□□□□ 0.77
SCARB2-216ENST00000639300 FAM9BQ8IZU0 186 aa19.88■□□□□ 0.77
SCARB2-216ENST00000639300 BAZ1BQ9UIG0 1483 aaKnown RBP19.86■□□□□ 0.77
SCARB2-216ENST00000639300 MROH2BQ7Z745 1585 aa19.85■□□□□ 0.77
SCARB2-216ENST00000639300 BAZ1AQ9NRL2 1556 aaPredicted RBP19.85■□□□□ 0.77
SCARB2-216ENST00000639300 RRP7BPQ9NSQ0 103 aa19.84■□□□□ 0.77
SCARB2-216ENST00000639300 CEP164Q9UPV0 1460 aa19.79■□□□□ 0.76
SCARB2-216ENST00000639300 SALL2Q9Y467 1007 aaPredicted RBP19.78■□□□□ 0.76
SCARB2-216ENST00000639300 KIF27Q86VH2 1401 aa19.76■□□□□ 0.75
SCARB2-216ENST00000639300 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.75■□□□□ 0.75
SCARB2-216ENST00000639300 KDM2AQ9Y2K7 1162 aa19.74■□□□□ 0.75
SCARB2-216ENST00000639300 SIN3AQ96ST3 1273 aa19.72■□□□□ 0.75
SCARB2-216ENST00000639300 CHMP7Q8WUX9 453 aaPredicted RBP19.71■□□□□ 0.75
SCARB2-216ENST00000639300 ABCC8Q09428 1581 aa19.7■□□□□ 0.74
SCARB2-216ENST00000639300 CCDC88BA6NC98 1476 aa19.7■□□□□ 0.74
SCARB2-216ENST00000639300 MRS2Q9HD23 443 aa19.69■□□□□ 0.74
SCARB2-216ENST00000639300 TSPY4P0CV99 314 aa19.69■□□□□ 0.74
SCARB2-216ENST00000639300 TSPY10P0CW01 314 aa19.69■□□□□ 0.74
SCARB2-216ENST00000639300 IRX6P78412 446 aaPredicted RBP19.69■□□□□ 0.74
SCARB2-216ENST00000639300 CHGAP10645 457 aaKnown RBP19.67■□□□□ 0.74
SCARB2-216ENST00000639300 BCL11AQ9H165 835 aa19.67■□□□□ 0.74
SCARB2-216ENST00000639300 TMC1Q8TDI8 760 aa19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms