RNA–Protein interactions for RNA: ENST00000640900.1

SCARB2-225, Transcript of scavenger receptor class B member 2, humanhuman

TSL 2

Gene SCARB2, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB2-225ENST00000640900 NISCHQ9Y2I1 1504 aa21.72■■□□□ 1.07
SCARB2-225ENST00000640900 AEBP2Q6ZN18 517 aaPredicted RBP19.91■□□□□ 0.78
SCARB2-225ENST00000640900 CHIC1Q5VXU3 224 aa19.54■□□□□ 0.72
SCARB2-225ENST00000640900 CCDC180Q9P1Z9 1646 aa19.14■□□□□ 0.65
SCARB2-225ENST00000640900 ABCC9O60706 1549 aa18.29■□□□□ 0.52
SCARB2-225ENST00000640900 ZCCHC6Q5VYS8 1495 aaKnown RBP18.18■□□□□ 0.5
SCARB2-225ENST00000640900 DCAF1Q9Y4B6 1507 aa18.05■□□□□ 0.48
SCARB2-225ENST00000640900 MYO15BQ96JP2 1530 aa18.02■□□□□ 0.47
SCARB2-225ENST00000640900 NACADO15069 1562 aa17.91■□□□□ 0.46
SCARB2-225ENST00000640900 RB1CC1Q8TDY2 1594 aa17.8■□□□□ 0.44
SCARB2-225ENST00000640900 DCAF8L2P0C7V8 631 aa17.78■□□□□ 0.44
SCARB2-225ENST00000640900 UNC13AQ9UPW8 1703 aa17.41■□□□□ 0.38
SCARB2-225ENST00000640900 SCRIBQ14160 1630 aa17.4■□□□□ 0.38
SCARB2-225ENST00000640900 BICRAQ9NZM4 1560 aa17.32■□□□□ 0.36
SCARB2-225ENST00000640900 SHROOM4Q9ULL8 1493 aa17.2■□□□□ 0.34
SCARB2-225ENST00000640900 PABPN1Q86U42 306 aaKnown RBP eCLIP17.15■□□□□ 0.34
SCARB2-225ENST00000640900 SENP3Q9H4L4 574 aaPredicted RBP17.13■□□□□ 0.33
SCARB2-225ENST00000640900 PHF23Q9BUL5 403 aaPredicted RBP17.06■□□□□ 0.32
SCARB2-225ENST00000640900 CECR2Q9BXF3 1484 aa16.86■□□□□ 0.29
SCARB2-225ENST00000640900 EIF4G1Q04637 1599 aaKnown RBP16.78■□□□□ 0.28
SCARB2-225ENST00000640900 BAZ1AQ9NRL2 1556 aaPredicted RBP16.77■□□□□ 0.28
SCARB2-225ENST00000640900 SMARCA4P51532 1647 aa16.74■□□□□ 0.27
SCARB2-225ENST00000640900 MROH2BQ7Z745 1585 aa16.72■□□□□ 0.27
SCARB2-225ENST00000640900 RSF1Q96T23 1441 aaPredicted RBP16.69■□□□□ 0.26
SCARB2-225ENST00000640900 PEG3Q9GZU2 1588 aa16.66■□□□□ 0.26
SCARB2-225ENST00000640900 CC2D2AQ9P2K1 1620 aa16.61■□□□□ 0.25
SCARB2-225ENST00000640900 ATAD2BQ9ULI0 1458 aa16.59■□□□□ 0.25
SCARB2-225ENST00000640900 SMARCA2P51531 1590 aa16.56■□□□□ 0.24
SCARB2-225ENST00000640900 NCAPD3P42695 1498 aa16.56■□□□□ 0.24
SCARB2-225ENST00000640900 DNAJC5BQ9UF47 199 aa16.56■□□□□ 0.24
SCARB2-225ENST00000640900 WIZO95785 1651 aa16.52■□□□□ 0.23
SCARB2-225ENST00000640900 HMGXB3Q12766 1538 aa16.49■□□□□ 0.23
SCARB2-225ENST00000640900 BAZ1BQ9UIG0 1483 aaKnown RBP16.42■□□□□ 0.22
SCARB2-225ENST00000640900 TOP2AP11388 1531 aaKnown RBP16.4■□□□□ 0.22
SCARB2-225ENST00000640900 SUPT5HO00267 1087 aaKnown RBP16.36■□□□□ 0.21
SCARB2-225ENST00000640900 CCDC88BA6NC98 1476 aa16.21■□□□□ 0.19
SCARB2-225ENST00000640900 CFTRP13569 1480 aa16.07■□□□□ 0.16
SCARB2-225ENST00000640900 CADPSQ9ULU8 1353 aa16.06■□□□□ 0.16
SCARB2-225ENST00000640900 LAMC3Q9Y6N6 1575 aa16.01■□□□□ 0.15
SCARB2-225ENST00000640900 PLPPR3Q6T4P5 718 aa15.97■□□□□ 0.15
SCARB2-225ENST00000640900 NESP48681 1621 aa15.97■□□□□ 0.15
SCARB2-225ENST00000640900 PRDM2Q13029 1718 aa15.91■□□□□ 0.14
SCARB2-225ENST00000640900 PDS5BQ9NTI5 1447 aa15.87■□□□□ 0.13
SCARB2-225ENST00000640900 FANCD2Q9BXW9 1451 aa15.84■□□□□ 0.13
SCARB2-225ENST00000640900 KIF21AQ7Z4S6 1674 aa15.77■□□□□ 0.12
SCARB2-225ENST00000640900 FOXD1Q16676 465 aa15.77■□□□□ 0.12
SCARB2-225ENST00000640900 CEP164Q9UPV0 1460 aa15.77■□□□□ 0.11
SCARB2-225ENST00000640900 ERCC6Q03468 1493 aa15.7■□□□□ 0.1
SCARB2-225ENST00000640900 URB2Q14146 1524 aaKnown RBP15.69■□□□□ 0.1
SCARB2-225ENST00000640900 MRC2Q9UBG0 1479 aa15.69■□□□□ 0.1
SCARB2-225ENST00000640900 THOC2Q8NI27 1593 aaKnown RBP15.68■□□□□ 0.1
SCARB2-225ENST00000640900 CUX1P39880 1505 aa15.68■□□□□ 0.1
SCARB2-225ENST00000640900 ABCC8Q09428 1581 aa15.67■□□□□ 0.1
SCARB2-225ENST00000640900 WRNQ14191 1432 aaPredicted RBP eCLIP15.67■□□□□ 0.1
SCARB2-225ENST00000640900 WDR62O43379 1518 aa15.66■□□□□ 0.1
SCARB2-225ENST00000640900 DNMBPQ6XZF7 1577 aa15.65■□□□□ 0.1
SCARB2-225ENST00000640900 TOPBP1Q92547 1522 aa15.64■□□□□ 0.09
SCARB2-225ENST00000640900 TOP2BQ02880 1626 aa15.63■□□□□ 0.09
SCARB2-225ENST00000640900 SYNJ1O43426 1573 aa15.62■□□□□ 0.09
SCARB2-225ENST00000640900 BIVM-ERCC5R4GMW8 1640 aa15.62■□□□□ 0.09
SCARB2-225ENST00000640900 POLA1P09884 1462 aaPredicted RBP15.54■□□□□ 0.08
SCARB2-225ENST00000640900 CUX2O14529 1486 aa15.53■□□□□ 0.08
SCARB2-225ENST00000640900 FGD5Q6ZNL6 1462 aa15.52■□□□□ 0.08
SCARB2-225ENST00000640900 TRIM41Q8WV44 630 aa15.48■□□□□ 0.07
SCARB2-225ENST00000640900 TARBP1Q13395 1621 aaKnown RBP15.47■□□□□ 0.07
SCARB2-225ENST00000640900 IFT140Q96RY7 1462 aa15.46■□□□□ 0.06
SCARB2-225ENST00000640900 SOGA1O94964 1423 aa15.45■□□□□ 0.06
SCARB2-225ENST00000640900 ABCA10Q8WWZ4 1543 aa15.44■□□□□ 0.06
SCARB2-225ENST00000640900 RAD54L2Q9Y4B4 1467 aa15.44■□□□□ 0.06
SCARB2-225ENST00000640900 WDR97A6NE52 1622 aa15.42■□□□□ 0.06
SCARB2-225ENST00000640900 ZNF608Q9ULD9 1512 aaPredicted RBP15.35■□□□□ 0.05
SCARB2-225ENST00000640900 ABCA5Q8WWZ7 1642 aa15.33■□□□□ 0.04
SCARB2-225ENST00000640900 KIF27Q86VH2 1401 aa15.31■□□□□ 0.04
SCARB2-225ENST00000640900 TDRD9Q8NDG6 1382 aaKnown RBP15.3■□□□□ 0.04
SCARB2-225ENST00000640900 RUSC2Q8N2Y8 1516 aa15.29■□□□□ 0.04
SCARB2-225ENST00000640900 AQRO60306 1485 aaKnown RBP eCLIP15.29■□□□□ 0.04
SCARB2-225ENST00000640900 GAPVD1Q14C86 1478 aa15.29■□□□□ 0.04
SCARB2-225ENST00000640900 EIF4G3O43432 1585 aaKnown RBP15.28■□□□□ 0.04
SCARB2-225ENST00000640900 EEA1Q15075 1411 aa15.28■□□□□ 0.04
SCARB2-225ENST00000640900 IGF1RP08069 1367 aa15.26■□□□□ 0.03
SCARB2-225ENST00000640900 ERICH3Q5RHP9 1530 aa15.26■□□□□ 0.03
SCARB2-225ENST00000640900 GRIN2BQ13224 1484 aa15.24■□□□□ 0.03
SCARB2-225ENST00000640900 PBRM1Q86U86 1689 aa15.19■□□□□ 0.02
SCARB2-225ENST00000640900 MAGI1Q96QZ7 1491 aaPredicted RBP15.19■□□□□ 0.02
SCARB2-225ENST00000640900 CSRNP3Q8WYN3 585 aa15.18■□□□□ 0.02
SCARB2-225ENST00000640900 PRXQ9BXM0 1461 aa15.18■□□□□ 0.02
SCARB2-225ENST00000640900 ADRA2BP18089 450 aa15.17■□□□□ 0.02
SCARB2-225ENST00000640900 SNAPC4Q5SXM2 1469 aa15.15■□□□□ 0.02
SCARB2-225ENST00000640900 CUL7Q14999 1698 aa15.15■□□□□ 0.02
SCARB2-225ENST00000640900 FHAD1B1AJZ9 1412 aa15.14■□□□□ 0.01
SCARB2-225ENST00000640900 ADAMTS12P58397 1594 aa15.14■□□□□ 0.01
SCARB2-225ENST00000640900 CARMIL1Q5VZK9 1371 aa15.13■□□□□ 0.01
SCARB2-225ENST00000640900 SYNJ2O15056 1496 aa15.11■□□□□ 0.01
SCARB2-225ENST00000640900 KIF21BO75037 1637 aa15.1■□□□□ 0.01
SCARB2-225ENST00000640900 FAM9AQ8IZU1 332 aaPredicted RBP15.08■□□□□ 0
SCARB2-225ENST00000640900 PPP6R1Q9UPN7 881 aa15.08■□□□□ 0
SCARB2-225ENST00000640900 RAPGEF2Q9Y4G8 1499 aa15.08■□□□□ 0
SCARB2-225ENST00000640900 GRIN2AQ12879 1464 aa15.05■□□□□ -0
SCARB2-225ENST00000640900 NUP160Q12769 1436 aa15.02■□□□□ -0
SCARB2-225ENST00000640900 PIAS4Q8N2W9 510 aaPredicted RBP15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 101.4 ms