RNA–Protein interactions for RNA: ENST00000640640.1

SCARB2-223, Transcript of scavenger receptor class B member 2, humanhuman

TSL 5 BASIC

Gene SCARB2, Length 4,608 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB2-223ENST00000640640 NISCHQ9Y2I1 1504 aa31.45■■■□□ 2.63
SCARB2-223ENST00000640640 DCAF8L2P0C7V8 631 aa31■■■□□ 2.55
SCARB2-223ENST00000640640 SUPT5HO00267 1087 aaKnown RBP29.72■■■□□ 2.35
SCARB2-223ENST00000640640 SHROOM4Q9ULL8 1493 aa29.48■■■□□ 2.31
SCARB2-223ENST00000640640 EHMT2Q96KQ7 1210 aa28.29■■■□□ 2.12
SCARB2-223ENST00000640640 FAM9AQ8IZU1 332 aaPredicted RBP27.88■■■□□ 2.05
SCARB2-223ENST00000640640 PCGF6Q9BYE7 350 aa27.58■■■□□ 2.01
SCARB2-223ENST00000640640 TRIM41Q8WV44 630 aa27.58■■■□□ 2
SCARB2-223ENST00000640640 APLP2Q06481 763 aa27.56■■■□□ 2
SCARB2-223ENST00000640640 TTBK1Q5TCY1 1321 aaPredicted RBP27.31■■□□□ 1.96
SCARB2-223ENST00000640640 RANGAP1P46060 587 aaPredicted RBP27.09■■□□□ 1.93
SCARB2-223ENST00000640640 UBTFP17480 764 aaKnown RBP27.02■■□□□ 1.92
SCARB2-223ENST00000640640 CHIC1Q5VXU3 224 aa26.96■■□□□ 1.91
SCARB2-223ENST00000640640 ZEB1P37275 1124 aaPredicted RBP26.89■■□□□ 1.89
SCARB2-223ENST00000640640 CCER1Q8TC90 406 aaPredicted RBP26.84■■□□□ 1.89
SCARB2-223ENST00000640640 LOC105371045A0A1W2PR82 267 aa26.72■■□□□ 1.87
SCARB2-223ENST00000640640 ATP1B4Q9UN42 357 aaPredicted RBP26.68■■□□□ 1.86
SCARB2-223ENST00000640640 PPARGC1BQ86YN6 1023 aaKnown RBP26.66■■□□□ 1.86
SCARB2-223ENST00000640640 ABCC9O60706 1549 aa26.62■■□□□ 1.85
SCARB2-223ENST00000640640 TRIM26Q12899 539 aaPredicted RBP26.61■■□□□ 1.85
SCARB2-223ENST00000640640 PELP1Q8IZL8 1130 aaKnown RBP26.6■■□□□ 1.85
SCARB2-223ENST00000640640 CENPBP07199 599 aaPredicted RBP26.37■■□□□ 1.81
SCARB2-223ENST00000640640 HRCP23327 699 aa26.35■■□□□ 1.81
SCARB2-223ENST00000640640 PABPN1Q86U42 306 aaKnown RBP eCLIP26.29■■□□□ 1.8
SCARB2-223ENST00000640640 ZCCHC6Q5VYS8 1495 aaKnown RBP26.13■■□□□ 1.77
SCARB2-223ENST00000640640 ITGAEP38570 1179 aa26.01■■□□□ 1.75
SCARB2-223ENST00000640640 HNRNPUL2Q1KMD3 747 aaKnown RBP26■■□□□ 1.75
SCARB2-223ENST00000640640 YTHDC1Q96MU7 727 aaKnown RBP25.94■■□□□ 1.74
SCARB2-223ENST00000640640 CCDC180Q9P1Z9 1646 aa25.86■■□□□ 1.73
SCARB2-223ENST00000640640 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.8■■□□□ 1.72
SCARB2-223ENST00000640640 SCRIBQ14160 1630 aa25.73■■□□□ 1.71
SCARB2-223ENST00000640640 NEFLP07196 543 aa25.62■■□□□ 1.69
SCARB2-223ENST00000640640 CSRNP3Q8WYN3 585 aa25.56■■□□□ 1.68
SCARB2-223ENST00000640640 FAM50AQ14320 339 aaKnown RBP25.45■■□□□ 1.66
SCARB2-223ENST00000640640 DIEXFQ68CQ4 756 aaKnown RBP25.42■■□□□ 1.66
SCARB2-223ENST00000640640 ERICH6Q7L0X2 663 aa25.38■■□□□ 1.65
SCARB2-223ENST00000640640 MYT1LQ9UL68 1186 aa25.37■■□□□ 1.65
SCARB2-223ENST00000640640 POLR3GLQ9BT43 218 aa25.34■■□□□ 1.65
SCARB2-223ENST00000640640 RSF1Q96T23 1441 aaPredicted RBP25.18■■□□□ 1.62
SCARB2-223ENST00000640640 DCAF1Q9Y4B6 1507 aa25.17■■□□□ 1.62
SCARB2-223ENST00000640640 NEUROD1Q13562 356 aa25.15■■□□□ 1.62
SCARB2-223ENST00000640640 P3H3Q8IVL6 736 aa25.15■■□□□ 1.62
SCARB2-223ENST00000640640 TRIM52Q96A61 297 aa25.15■■□□□ 1.62
SCARB2-223ENST00000640640 CNGB1Q14028 1251 aaPredicted RBP25.14■■□□□ 1.61
SCARB2-223ENST00000640640 RB1CC1Q8TDY2 1594 aa25.09■■□□□ 1.61
SCARB2-223ENST00000640640 FBLN2P98095 1184 aa25.08■■□□□ 1.6
SCARB2-223ENST00000640640 NACADO15069 1562 aa25.01■■□□□ 1.59
SCARB2-223ENST00000640640 ZNF316A6NFI3 1004 aaPredicted RBP24.99■■□□□ 1.59
SCARB2-223ENST00000640640 MYO15BQ96JP2 1530 aa24.98■■□□□ 1.59
SCARB2-223ENST00000640640 ARID3CA6NKF2 412 aa24.89■■□□□ 1.58
SCARB2-223ENST00000640640 ZNF326Q5BKZ1 582 aaKnown RBP24.78■■□□□ 1.56
SCARB2-223ENST00000640640 ANP32CO43423 234 aa24.75■■□□□ 1.55
SCARB2-223ENST00000640640 GTF3C3Q9Y5Q9 886 aa24.73■■□□□ 1.55
SCARB2-223ENST00000640640 CECR2Q9BXF3 1484 aa24.71■■□□□ 1.55
SCARB2-223ENST00000640640 CDK11AQ9UQ88 783 aaPredicted RBP24.7■■□□□ 1.54
SCARB2-223ENST00000640640 SLC4A1APQ9BWU0 796 aaKnown RBP24.7■■□□□ 1.54
SCARB2-223ENST00000640640 EEA1Q15075 1411 aa24.69■■□□□ 1.54
SCARB2-223ENST00000640640 CLIP1P30622 1438 aa24.68■■□□□ 1.54
SCARB2-223ENST00000640640 WRNQ14191 1432 aaPredicted RBP eCLIP24.65■■□□□ 1.54
SCARB2-223ENST00000640640 ZNF777Q9ULD5 760 aaPredicted RBP24.65■■□□□ 1.54
SCARB2-223ENST00000640640 MYT1Q01538 1121 aa24.64■■□□□ 1.53
SCARB2-223ENST00000640640 BAZ1AQ9NRL2 1556 aaPredicted RBP24.64■■□□□ 1.53
SCARB2-223ENST00000640640 BAZ1BQ9UIG0 1483 aaKnown RBP24.61■■□□□ 1.53
SCARB2-223ENST00000640640 CEP162Q5TB80 1403 aa24.59■■□□□ 1.53
SCARB2-223ENST00000640640 GOLGA3Q08378 1498 aa24.57■■□□□ 1.52
SCARB2-223ENST00000640640 ACIN1Q9UKV3 1341 aaKnown RBP24.54■■□□□ 1.52
SCARB2-223ENST00000640640 DAXXQ9UER7 740 aaPredicted RBP24.53■■□□□ 1.52
SCARB2-223ENST00000640640 BCANQ96GW7 911 aa24.49■■□□□ 1.51
SCARB2-223ENST00000640640 TONSLQ96HA7 1378 aa24.48■■□□□ 1.51
SCARB2-223ENST00000640640 TNIKQ9UKE5 1360 aa24.46■■□□□ 1.51
SCARB2-223ENST00000640640 MTUS2Q5JR59 1369 aa24.42■■□□□ 1.5
SCARB2-223ENST00000640640 CHIC2Q9UKJ5 165 aa24.4■■□□□ 1.5
SCARB2-223ENST00000640640 MROH2BQ7Z745 1585 aa24.4■■□□□ 1.5
SCARB2-223ENST00000640640 CEP164Q9UPV0 1460 aa24.38■■□□□ 1.49
SCARB2-223ENST00000640640 KIF27Q86VH2 1401 aa24.37■■□□□ 1.49
SCARB2-223ENST00000640640 DDX10Q13206 875 aaKnown RBP24.33■■□□□ 1.48
SCARB2-223ENST00000640640 CHMP7Q8WUX9 453 aaPredicted RBP24.29■■□□□ 1.48
SCARB2-223ENST00000640640 CLSPNQ9HAW4 1339 aa24.27■■□□□ 1.48
SCARB2-223ENST00000640640 SOGA1O94964 1423 aa24.25■■□□□ 1.47
SCARB2-223ENST00000640640 CCDC88BA6NC98 1476 aa24.21■■□□□ 1.47
SCARB2-223ENST00000640640 TSPY4P0CV99 314 aa24.18■■□□□ 1.46
SCARB2-223ENST00000640640 TSPY10P0CW01 314 aa24.18■■□□□ 1.46
SCARB2-223ENST00000640640 MIER1Q8N108 512 aa24.12■■□□□ 1.45
SCARB2-223ENST00000640640 RRP7BPQ9NSQ0 103 aa24.12■■□□□ 1.45
SCARB2-223ENST00000640640 ABCC8Q09428 1581 aa24.09■■□□□ 1.45
SCARB2-223ENST00000640640 HNRNPUQ00839 825 aaKnown RBP eCLIP24.09■■□□□ 1.45
SCARB2-223ENST00000640640 NPM1P06748 294 aaKnown RBP eCLIP24.08■■□□□ 1.45
SCARB2-223ENST00000640640 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.07■■□□□ 1.44
SCARB2-223ENST00000640640 HIRIP3Q9BW71 556 aaPredicted RBP24.06■■□□□ 1.44
SCARB2-223ENST00000640640 RTL5Q5HYW3 569 aaPredicted RBP24.05■■□□□ 1.44
SCARB2-223ENST00000640640 WIZO95785 1651 aa24.02■■□□□ 1.44
SCARB2-223ENST00000640640 CHGAP10645 457 aaKnown RBP24.02■■□□□ 1.44
SCARB2-223ENST00000640640 FAM9BQ8IZU0 186 aa24.02■■□□□ 1.44
SCARB2-223ENST00000640640 FKBP8Q14318 412 aa24.01■■□□□ 1.43
SCARB2-223ENST00000640640 CUX2O14529 1486 aa24.01■■□□□ 1.43
SCARB2-223ENST00000640640 CARMIL1Q5VZK9 1371 aa24■■□□□ 1.43
SCARB2-223ENST00000640640 PLEKHD1A6NEE1 506 aa23.99■■□□□ 1.43
SCARB2-223ENST00000640640 SMARCA2P51531 1590 aa23.98■■□□□ 1.43
SCARB2-223ENST00000640640 KDM2AQ9Y2K7 1162 aa23.97■■□□□ 1.43
SCARB2-223ENST00000640640 TOP2AP11388 1531 aaKnown RBP23.94■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms