Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC14.19□□□□□ -0.141e-7■■■■□ 20.1
SUB1P53999 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC14.01□□□□□ -0.171e-7■■■■□ 20.1
SUB1P53999 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC13.85□□□□□ -0.191e-7■■■■□ 20.1
SUB1P53999 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC13.84□□□□□ -0.191e-7■■■■□ 20.1
SUB1P53999 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC13.39□□□□□ -0.271e-7■■■■□ 20.1
SUB1P53999 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC13.03□□□□□ -0.321e-7■■■■□ 20.1
SUB1P53999 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC12.91□□□□□ -0.341e-7■■■■□ 20.1
SUB1P53999 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC12.64□□□□□ -0.391e-7■■■■□ 20.1
SUB1P53999 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC12.54□□□□□ -0.41e-7■■■■□ 20.1
SUB1P53999 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC12.39□□□□□ -0.431e-7■■■■□ 20.1
SUB1P53999 LY6E-204ENST00000519546 971 ntTSL 2 BASIC12.13□□□□□ -0.471e-7■■■■□ 20.1
SUB1P53999 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.531e-7■■■■□ 20.1
SUB1P53999 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC11.61□□□□□ -0.551e-7■■■■□ 20.1
SUB1P53999 ADIPOR1-204ENST00000426229 879 ntTSL 211.42□□□□□ -0.581e-7■■■■□ 20.1
SUB1P53999 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC11.34□□□□□ -0.591e-7■■■■□ 20.1
SUB1P53999 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.61e-7■■■■□ 20.1
SUB1P53999 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC11.23□□□□□ -0.611e-7■■■■□ 20.1
SUB1P53999 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.621e-7■■■■□ 20.1
SUB1P53999 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC10.84□□□□□ -0.671e-7■■■■□ 20.1
SUB1P53999 NGLY1-205ENST00000417874 2062 ntTSL 2 BASIC10.84□□□□□ -0.671e-7■■■■□ 20.1
SUB1P53999 KIFC3-216ENST00000564136 3071 ntTSL 210.79□□□□□ -0.681e-7■■■■□ 20.1
SUB1P53999 ADIPOR1-203ENST00000417068 1058 ntTSL 310.78□□□□□ -0.681e-7■■■■□ 20.1
SUB1P53999 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC9.88□□□□□ -0.831e-7■■■■□ 20.1
SUB1P53999 CETN3-201ENST00000283122 2432 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.841e-7■■■■□ 20.1
SUB1P53999 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC9.69□□□□□ -0.861e-7■■■■□ 20.1
SUB1P53999 CETN3-203ENST00000522083 1026 ntTSL 2 BASIC9.11□□□□□ -0.951e-7■■■■□ 20.1
SUB1P53999 SCFD1-201ENST00000311943 2016 ntTSL 29.03□□□□□ -0.961e-7■■■■□ 20.1
SUB1P53999 LY6E-215ENST00000523847 427 ntTSL 3 BASIC8.99□□□□□ -0.971e-7■■■■□ 20.1
SUB1P53999 API5-201ENST00000378852 3714 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.011e-7■■■■□ 20.1
SUB1P53999 SCFD1-206ENST00000484733 2308 ntTSL 58.42□□□□□ -1.061e-7■■■■□ 20.1
SUB1P53999 SPIN4-201ENST00000374884 4117 ntAPPRIS P1 BASIC8.21□□□□□ -1.091e-7■■■■□ 20.1
SUB1P53999 UTP11-201ENST00000373014 2019 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.111e-7■■■■□ 20.1
SUB1P53999 RPAP3-201ENST00000005386 4370 ntAPPRIS P1 TSL 2 BASIC7.98□□□□□ -1.131e-7■■■■□ 20.1
SUB1P53999 HTT-208ENST00000510626 14438 ntTSL 1 (best)7.75□□□□□ -1.171e-7■■■■□ 20.1
SUB1P53999 HTT-201ENST00000355072 13474 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.21e-7■■■■□ 20.1
SUB1P53999 DSCR8-203ENST00000465532 791 ntTSL 25.91□□□□□ -1.461e-7■■■■□ 20.1
SUB1P53999 SCFD1-202ENST00000396629 2021 ntTSL 2 BASIC5.89□□□□□ -1.471e-7■■■■□ 20.1
SUB1P53999 ORC3-206ENST00000546266 2470 ntTSL 2 BASIC5.88□□□□□ -1.471e-7■■■■□ 20.1
SUB1P53999 DSCR8-207ENST00000495344 606 ntTSL 25.7□□□□□ -1.51e-7■■■■□ 20.1
SUB1P53999 DSCR8-205ENST00000472602 766 ntTSL 35.66□□□□□ -1.51e-7■■■■□ 20.1
SUB1P53999 SCFD1-222ENST00000556768 1829 ntTSL 1 (best)5.54□□□□□ -1.521e-7■■■■□ 20.1
SUB1P53999 TMPO-213ENST00000556678 713 ntTSL 55.16□□□□□ -1.581e-7■■■■□ 20.1
SUB1P53999 DSCR8-206ENST00000478613 716 ntTSL 24.81□□□□□ -1.641e-7■■■■□ 20.1
SUB1P53999 CETN3-206ENST00000522864 738 ntTSL 3 BASIC4.39□□□□□ -1.711e-7■■■■□ 20.1
SUB1P53999 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC4.31□□□□□ -1.721e-7■■■■□ 20.1
SUB1P53999 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.721e-7■■■■□ 20.1
SUB1P53999 DSCR8-204ENST00000469658 437 ntTSL 24.31□□□□□ -1.721e-7■■■■□ 20.1
SUB1P53999 UTP11-204ENST00000488453 1895 ntTSL 24.05□□□□□ -1.761e-7■■■■□ 20.1
SUB1P53999 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC3.77□□□□□ -1.811e-7■■■■□ 20.1
SUB1P53999 SCFD1-209ENST00000553280 574 ntTSL 23.61□□□□□ -1.831e-7■■■■□ 20.1
SUB1P53999 SCFD1-211ENST00000554437 688 ntTSL 33.41□□□□□ -1.861e-7■■■■□ 20.1
SUB1P53999 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.871e-7■■■■□ 20.1
SUB1P53999 SCFD1-204ENST00000463622 1943 ntTSL 22.66□□□□□ -1.981e-7■■■■□ 20.1
SUB1P53999 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC2.57□□□□□ -21e-7■■■■□ 20.1
SUB1P53999 RPAP3-205ENST00000548211 555 ntTSL 22.28□□□□□ -2.041e-7■■■■□ 20.1
SUB1P53999 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.11□□□□□ -2.071e-7■■■■□ 20.1
SUB1P53999 TMPO-211ENST00000552831 743 ntTSL 21.96□□□□□ -2.11e-7■■■■□ 20.1
SUB1P53999 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.54□□□□□ -2.161e-7■■■■□ 20.1
SUB1P53999 RPL24-204ENST00000470961 572 ntTSL 27.45□□□□□ -1.225e-59■■■■□ 20
SUB1P53999 RPL17-206ENST00000579495 914 ntTSL 214.3□□□□□ -0.122e-21■■■■□ 20
SUB1P53999 RPL17-211ENST00000581305 593 ntTSL 57.87□□□□□ -1.152e-21■■■■□ 20
SUB1P53999 RPL17-215ENST00000582782 562 ntTSL 33.42□□□□□ -1.862e-21■■■■□ 20
SUB1P53999 RPL17-203ENST00000578966 563 ntTSL 1 (best)2.27□□□□□ -2.052e-21■■■■□ 20
SUB1P53999 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.189e-26■■■■□ 20
SUB1P53999 HSPG2-211ENST00000486901 3586 ntTSL 29.87□□□□□ -0.833e-6■■■■□ 20
SUB1P53999 CCT6A-203ENST00000462133 665 ntTSL 38.09□□□□□ -1.114e-9■■■■□ 20
SUB1P53999 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.22e-9■■■■□ 20
SUB1P53999 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC9.82□□□□□ -0.842e-9■■■■□ 20
SUB1P53999 GGCT-203ENST00000409144 836 ntTSL 2 BASIC9.82□□□□□ -0.842e-9■■■■□ 20
SUB1P53999 GGCT-207ENST00000440082 1012 ntTSL 28.63□□□□□ -1.032e-9■■■■□ 20
SUB1P53999 GGCT-206ENST00000426081 889 ntTSL 33.36□□□□□ -1.872e-9■■■■□ 20
SUB1P53999 MRPL18-204ENST00000480842 1075 ntTSL 311.02□□□□□ -0.652e-6■■■■□ 20
SUB1P53999 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.832e-6■■■■□ 20
SUB1P53999 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.432e-13■■■■□ 19.9
SUB1P53999 TAF11-202ENST00000420584 1465 ntTSL 2 BASIC10.22□□□□□ -0.772e-13■■■■□ 19.9
SUB1P53999 HNRNPH1-248ENST00000524179 598 ntTSL 211.34□□□□□ -0.594e-19■■■■□ 19.9
SUB1P53999 HNRNPH1-246ENST00000523449 793 ntTSL 39.4□□□□□ -0.94e-19■■■■□ 19.9
SUB1P53999 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC14.06□□□□□ -0.164e-10■■■■□ 19.9
SUB1P53999 TBCD-222ENST00000576677 1926 ntTSL 1 (best)17.63■□□□□ 0.413e-6■■■■□ 19.8
SUB1P53999 TBCD-223ENST00000576691 929 ntTSL 313.19□□□□□ -0.33e-6■■■■□ 19.8
SUB1P53999 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC12.4□□□□□ -0.423e-6■■■■□ 19.8
SUB1P53999 TBCD-220ENST00000576432 684 ntTSL 211.81□□□□□ -0.523e-6■■■■□ 19.8
SUB1P53999 TBCD-226ENST00000577051 979 ntTSL 511.23□□□□□ -0.613e-6■■■■□ 19.8
SUB1P53999 TBCD-201ENST00000355528 7168 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.743e-6■■■■□ 19.8
SUB1P53999 EIF1-202ENST00000462917 2170 ntTSL 1 (best)14.94□□□□□ -0.022e-19■■■■□ 19.8
SUB1P53999 EIF1-201ENST00000310837 1120 ntTSL 1 (best)6.48□□□□□ -1.372e-19■■■■□ 19.8
SUB1P53999 EIF1-203ENST00000469257 2330 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.572e-19■■■■□ 19.8
SUB1P53999 EIF1-205ENST00000482111 1428 ntTSL 24.83□□□□□ -1.642e-19■■■■□ 19.8
SUB1P53999 SSR2-204ENST00000467041 577 ntTSL 316.89■□□□□ 0.293e-7■■■■□ 19.8
SUB1P53999 SSR2-217ENST00000531917 555 ntTSL 511.25□□□□□ -0.613e-7■■■■□ 19.8
SUB1P53999 SSR2-206ENST00000472898 711 ntTSL 28.1□□□□□ -1.113e-7■■■■□ 19.8
SUB1P53999 SSR2-202ENST00000368311 5166 ntTSL 1 (best)7.48□□□□□ -1.213e-7■■■■□ 19.8
SUB1P53999 SSR2-203ENST00000466905 666 ntTSL 57.01□□□□□ -1.293e-7■■■■□ 19.8
SUB1P53999 SSR2-208ENST00000474377 639 ntTSL 56.63□□□□□ -1.353e-7■■■■□ 19.8
SUB1P53999 SSR2-214ENST00000526212 351 ntTSL 55.93□□□□□ -1.463e-7■■■■□ 19.8
SUB1P53999 SSR2-216ENST00000531790 476 ntTSL 55.53□□□□□ -1.523e-7■■■■□ 19.8
SUB1P53999 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC10.41□□□□□ -0.746e-6■■■■□ 19.8
SUB1P53999 HTATIP2-203ENST00000443524 967 ntAPPRIS P1 TSL 2 BASIC9.52□□□□□ -0.896e-6■■■■□ 19.8
SUB1P53999 MARS-226ENST00000551892 748 ntTSL 316.5■□□□□ 0.237e-7■■■■□ 19.8
SUB1P53999 MARS-227ENST00000552007 434 ntTSL 316.5■□□□□ 0.237e-7■■■■□ 19.8
Retrieved 100 of 11,644 protein–RNA pairs in 132.7 ms