RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 AEBP2Q6ZN18 517 aaPredicted RBP24.77■■□□□ 1.56
SCFD1-209ENST00000553280 CHIC1Q5VXU3 224 aa23.81■■□□□ 1.4
SCFD1-209ENST00000553280 SENP3Q9H4L4 574 aaPredicted RBP21.02■□□□□ 0.96
SCFD1-209ENST00000553280 PHF23Q9BUL5 403 aaPredicted RBP20.94■□□□□ 0.94
SCFD1-209ENST00000553280 FOXD1Q16676 465 aa19.59■□□□□ 0.73
SCFD1-209ENST00000553280 PLPPR3Q6T4P5 718 aa19.18■□□□□ 0.66
SCFD1-209ENST00000553280 PPP6R1Q9UPN7 881 aa18.61■□□□□ 0.57
SCFD1-209ENST00000553280 ADRA2BP18089 450 aa18.58■□□□□ 0.56
SCFD1-209ENST00000553280 PIAS4Q8N2W9 510 aaPredicted RBP18.41■□□□□ 0.54
SCFD1-209ENST00000553280 MSH5O43196 834 aa18.15■□□□□ 0.5
SCFD1-209ENST00000553280 POTEDQ86YR6 584 aa17.61■□□□□ 0.41
SCFD1-209ENST00000553280 MAPK8IP2Q13387 824 aaPredicted RBP16.98■□□□□ 0.31
SCFD1-209ENST00000553280 SCAF1Q9H7N4 1312 aaKnown RBP16.93■□□□□ 0.3
SCFD1-209ENST00000553280 PPP4R3CPQ6ZMV5 832 aa16.89■□□□□ 0.29
SCFD1-209ENST00000553280 DMRT2Q9Y5R5 561 aa16.73■□□□□ 0.27
SCFD1-209ENST00000553280 CNKSR2Q8WXI2 1034 aa16.46■□□□□ 0.23
SCFD1-209ENST00000553280 NCBP3Q53F19 620 aaKnown RBP16.31■□□□□ 0.2
SCFD1-209ENST00000553280 HOXD11P31277 338 aaPredicted RBP16.23■□□□□ 0.19
SCFD1-209ENST00000553280 RNF216Q9NWF9 866 aaPredicted RBP16.21■□□□□ 0.19
SCFD1-209ENST00000553280 KCNA4P22459 653 aa16.13■□□□□ 0.17
SCFD1-209ENST00000553280 DCAF8L1A6NGE4 600 aa16.12■□□□□ 0.17
SCFD1-209ENST00000553280 NPM3O75607 178 aaKnown RBP16.1■□□□□ 0.17
SCFD1-209ENST00000553280 RNF39Q9H2S5 420 aa15.54■□□□□ 0.08
SCFD1-209ENST00000553280 DNAJC5BQ9UF47 199 aa15.54■□□□□ 0.08
SCFD1-209ENST00000553280 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.53■□□□□ 0.08
SCFD1-209ENST00000553280 CACNB1Q02641 598 aaPredicted RBP15.43■□□□□ 0.06
SCFD1-209ENST00000553280 C1QBPQ07021 282 aaKnown RBP15.31■□□□□ 0.04
SCFD1-209ENST00000553280 SLC4A2P04920 1241 aa15.29■□□□□ 0.04
SCFD1-209ENST00000553280 SLC4A1APQ9BWU0 796 aaKnown RBP15.28■□□□□ 0.04
SCFD1-209ENST00000553280 U3KPZ7 1027 aaPredicted RBP15.22■□□□□ 0.03
SCFD1-209ENST00000553280 SPINK5Q9NQ38 1064 aaPredicted RBP14.94□□□□□ -0.02
SCFD1-209ENST00000553280 FOXD4L1Q9NU39 408 aa14.91□□□□□ -0.02
SCFD1-209ENST00000553280 CAPN15O75808 1086 aa14.89□□□□□ -0.03
SCFD1-209ENST00000553280 MYCNP04198 464 aaPredicted RBP14.87□□□□□ -0.03
SCFD1-209ENST00000553280 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.85□□□□□ -0.03
SCFD1-209ENST00000553280 HNRNPUL2Q1KMD3 747 aaKnown RBP14.85□□□□□ -0.03
SCFD1-209ENST00000553280 ZBTB22O15209 634 aa14.84□□□□□ -0.03
SCFD1-209ENST00000553280 SAMD1Q6SPF0 538 aaPredicted RBP14.8□□□□□ -0.04
SCFD1-209ENST00000553280 APLP2Q06481 763 aa14.77□□□□□ -0.05
SCFD1-209ENST00000553280 TRHP20396 242 aaPredicted RBP14.75□□□□□ -0.05
SCFD1-209ENST00000553280 EHMT2Q96KQ7 1210 aa14.72□□□□□ -0.05
SCFD1-209ENST00000553280 DSG3P32926 999 aa14.69□□□□□ -0.06
SCFD1-209ENST00000553280 ZNF219Q9P2Y4 722 aaPredicted RBP14.66□□□□□ -0.06
SCFD1-209ENST00000553280 ABCB7O75027 752 aa14.61□□□□□ -0.07
SCFD1-209ENST00000553280 ATF5Q9Y2D1 282 aaPredicted RBP14.55□□□□□ -0.08
SCFD1-209ENST00000553280 CSRNP3Q8WYN3 585 aa14.45□□□□□ -0.1
SCFD1-209ENST00000553280 POLA2Q14181 598 aa14.41□□□□□ -0.1
SCFD1-209ENST00000553280 ATXN8OSP0DMR3 200 aa14.36□□□□□ -0.11
SCFD1-209ENST00000553280 ZBTB12Q9Y330 459 aaPredicted RBP14.07□□□□□ -0.16
SCFD1-209ENST00000553280 RBM42Q9BTD8 480 aaKnown RBP13.97□□□□□ -0.17
SCFD1-209ENST00000553280 OSCARQ8IYS5 282 aa13.95□□□□□ -0.18
SCFD1-209ENST00000553280 FBLN2P98095 1184 aa13.91□□□□□ -0.18
SCFD1-209ENST00000553280 MKRN4PQ13434 485 aaPredicted RBP13.87□□□□□ -0.19
SCFD1-209ENST00000553280 POTEHQ6S545 545 aa13.8□□□□□ -0.2
SCFD1-209ENST00000553280 AKT1S1Q96B36 256 aa13.73□□□□□ -0.21
SCFD1-209ENST00000553280 SPDYE2BA6NHP3 402 aa13.69□□□□□ -0.22
SCFD1-209ENST00000553280 SPDYE6P0CI01 402 aa13.69□□□□□ -0.22
SCFD1-209ENST00000553280 SPDYE2Q495Y8 402 aa13.69□□□□□ -0.22
SCFD1-209ENST00000553280 REM2Q8IYK8 340 aaPredicted RBP13.63□□□□□ -0.23
SCFD1-209ENST00000553280 ZNF692Q9BU19 519 aaPredicted RBP13.62□□□□□ -0.23
SCFD1-209ENST00000553280 CHRDL2Q6WN34 429 aa13.56□□□□□ -0.24
SCFD1-209ENST00000553280 SSUH2Q9Y2M2 353 aa13.54□□□□□ -0.24
SCFD1-209ENST00000553280 PITPNM1O00562 1244 aa13.49□□□□□ -0.25
SCFD1-209ENST00000553280 PABPN1Q86U42 306 aaKnown RBP eCLIP13.44□□□□□ -0.26
SCFD1-209ENST00000553280 CLEC11AQ9Y240 323 aa13.41□□□□□ -0.26
SCFD1-209ENST00000553280 SPDYE4A6NLX3 237 aa13.4□□□□□ -0.26
SCFD1-209ENST00000553280 SPDYE1Q8NFV5 336 aaPredicted RBP13.37□□□□□ -0.27
SCFD1-209ENST00000553280 PIP4P2Q8N4L2 257 aa13.33□□□□□ -0.28
SCFD1-209ENST00000553280 FXR2P51116 673 aaKnown RBP eCLIP13.27□□□□□ -0.29
SCFD1-209ENST00000553280 PRR29P0C7W0 189 aa13.2□□□□□ -0.3
SCFD1-209ENST00000553280 PRKAR2AP13861 404 aaKnown RBP13.16□□□□□ -0.3
SCFD1-209ENST00000553280 FKBP8Q14318 412 aa13.12□□□□□ -0.31
SCFD1-209ENST00000553280 CHADLQ6NUI6 762 aa13.12□□□□□ -0.31
SCFD1-209ENST00000553280 STAG3Q9UJ98 1225 aa13.08□□□□□ -0.32
SCFD1-209ENST00000553280 PROM2Q8N271 834 aa13.05□□□□□ -0.32
SCFD1-209ENST00000553280 HAX1O00165 279 aa13.01□□□□□ -0.33
SCFD1-209ENST00000553280 CREBZFQ9NS37 354 aa12.94□□□□□ -0.34
SCFD1-209ENST00000553280 FARP1Q9Y4F1 1045 aaPredicted RBP12.9□□□□□ -0.34
SCFD1-209ENST00000553280 EVX2Q03828 476 aa12.89□□□□□ -0.35
SCFD1-209ENST00000553280 SP7Q8TDD2 431 aaPredicted RBP12.88□□□□□ -0.35
SCFD1-209ENST00000553280 AMER1Q5JTC6 1135 aaPredicted RBP12.85□□□□□ -0.35
SCFD1-209ENST00000553280 C19orf67A6NJJ6 358 aa12.84□□□□□ -0.35
SCFD1-209ENST00000553280 RTN4Q9NQC3 1192 aaKnown RBP12.83□□□□□ -0.36
SCFD1-209ENST00000553280 CD44P16070 742 aaKnown RBP12.76□□□□□ -0.37
SCFD1-209ENST00000553280 MIER1Q8N108 512 aa12.76□□□□□ -0.37
SCFD1-209ENST00000553280 MNX1P50219 401 aaPredicted RBP12.74□□□□□ -0.37
SCFD1-209ENST00000553280 PLCD3Q8N3E9 789 aa12.7□□□□□ -0.38
SCFD1-209ENST00000553280 PLEKHG5O94827 1062 aa12.69□□□□□ -0.38
SCFD1-209ENST00000553280 NPM1P06748 294 aaKnown RBP eCLIP12.69□□□□□ -0.38
SCFD1-209ENST00000553280 FBXO3Q9UK99 471 aa12.67□□□□□ -0.38
SCFD1-209ENST00000553280 ZRANB1Q9UGI0 708 aa12.64□□□□□ -0.39
SCFD1-209ENST00000553280 SLC24A1O60721 1099 aa12.6□□□□□ -0.39
SCFD1-209ENST00000553280 GABBR2O75899 941 aa12.59□□□□□ -0.39
SCFD1-209ENST00000553280 PAK3O75914 559 aaPredicted RBP12.58□□□□□ -0.4
SCFD1-209ENST00000553280 TSPYL2Q9H2G4 693 aaPredicted RBP12.55□□□□□ -0.4
SCFD1-209ENST00000553280 VASPP50552 380 aaPredicted RBP12.54□□□□□ -0.4
SCFD1-209ENST00000553280 ZNF579Q8NAF0 562 aaKnown RBP12.53□□□□□ -0.4
SCFD1-209ENST00000553280 PHF12Q96QT6 1004 aa12.51□□□□□ -0.41
SCFD1-209ENST00000553280 ZBTB47Q9UFB7 747 aaPredicted RBP12.51□□□□□ -0.41
SCFD1-209ENST00000553280 RASEFQ8IZ41 740 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms