RNA–Protein interactions for RNA: ENST00000467041.1

SSR2-204, Transcript of signal sequence receptor subunit 2, humanhuman

TSL 3

Gene SSR2, Length 577 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR2-204ENST00000467041 NISCHQ9Y2I1 1504 aa55.68■■■■■ 6.5
SSR2-204ENST00000467041 CCDC180Q9P1Z9 1646 aa49.66■■■■■ 5.54
SSR2-204ENST00000467041 ABCC9O60706 1549 aa49.09■■■■■ 5.45
SSR2-204ENST00000467041 RB1CC1Q8TDY2 1594 aa47■■■■■ 5.11
SSR2-204ENST00000467041 NACADO15069 1562 aa46.85■■■■■ 5.09
SSR2-204ENST00000467041 DCAF8L2P0C7V8 631 aa46.76■■■■■ 5.08
SSR2-204ENST00000467041 MYO15BQ96JP2 1530 aa46.43■■■■■ 5.02
SSR2-204ENST00000467041 ZCCHC6Q5VYS8 1495 aaKnown RBP46.26■■■■■ 5
SSR2-204ENST00000467041 DCAF1Q9Y4B6 1507 aa46.04■■■■■ 4.96
SSR2-204ENST00000467041 UNC13AQ9UPW8 1703 aa45.89■■■■■ 4.94
SSR2-204ENST00000467041 PABPN1Q86U42 306 aaKnown RBP eCLIP45.85■■■■■ 4.93
SSR2-204ENST00000467041 BICRAQ9NZM4 1560 aa45.61■■■■■ 4.89
SSR2-204ENST00000467041 DNAJC5BQ9UF47 199 aa45.58■■■■■ 4.89
SSR2-204ENST00000467041 SCRIBQ14160 1630 aa45.27■■■■■ 4.84
SSR2-204ENST00000467041 SHROOM4Q9ULL8 1493 aa45.08■■■■■ 4.81
SSR2-204ENST00000467041 EIF4G1Q04637 1599 aaKnown RBP44.43■■■■■ 4.7
SSR2-204ENST00000467041 CC2D2AQ9P2K1 1620 aa44.38■■■■■ 4.69
SSR2-204ENST00000467041 CECR2Q9BXF3 1484 aa44.18■■■■■ 4.66
SSR2-204ENST00000467041 SMARCA4P51532 1647 aa43.28■■■■■ 4.52
SSR2-204ENST00000467041 NCAPD3P42695 1498 aa43.26■■■■■ 4.52
SSR2-204ENST00000467041 ATAD2BQ9ULI0 1458 aa43.2■■■■■ 4.51
SSR2-204ENST00000467041 BAZ1AQ9NRL2 1556 aaPredicted RBP43.17■■■■■ 4.5
SSR2-204ENST00000467041 SMARCA2P51531 1590 aa43.1■■■■■ 4.49
SSR2-204ENST00000467041 HMGXB3Q12766 1538 aa42.96■■■■■ 4.47
SSR2-204ENST00000467041 MROH2BQ7Z745 1585 aa42.9■■■■■ 4.46
SSR2-204ENST00000467041 PEG3Q9GZU2 1588 aa42.88■■■■■ 4.45
SSR2-204ENST00000467041 BAZ1BQ9UIG0 1483 aaKnown RBP42.8■■■■■ 4.44
SSR2-204ENST00000467041 WIZO95785 1651 aa42.39■■■■■ 4.38
SSR2-204ENST00000467041 NESP48681 1621 aa42.35■■■■■ 4.37
SSR2-204ENST00000467041 ERCC6Q03468 1493 aa42.34■■■■■ 4.37
SSR2-204ENST00000467041 RSF1Q96T23 1441 aaPredicted RBP42.26■■■■■ 4.36
SSR2-204ENST00000467041 LAMC3Q9Y6N6 1575 aa42.15■■■■■ 4.34
SSR2-204ENST00000467041 CUX2O14529 1486 aa42.08■■■■■ 4.33
SSR2-204ENST00000467041 CADPSQ9ULU8 1353 aa41.99■■■■■ 4.31
SSR2-204ENST00000467041 PDS5BQ9NTI5 1447 aa41.93■■■■■ 4.3
SSR2-204ENST00000467041 TOP2AP11388 1531 aaKnown RBP41.91■■■■■ 4.3
SSR2-204ENST00000467041 KIF21AQ7Z4S6 1674 aa41.78■■■■■ 4.28
SSR2-204ENST00000467041 THOC2Q8NI27 1593 aaKnown RBP41.77■■■■■ 4.28
SSR2-204ENST00000467041 CFTRP13569 1480 aa41.62■■■■■ 4.25
SSR2-204ENST00000467041 MRC2Q9UBG0 1479 aa41.49■■■■■ 4.23
SSR2-204ENST00000467041 FANCD2Q9BXW9 1451 aa41.47■■■■■ 4.23
SSR2-204ENST00000467041 CCDC88BA6NC98 1476 aa41.47■■■■■ 4.23
SSR2-204ENST00000467041 CEP164Q9UPV0 1460 aa41.45■■■■■ 4.23
SSR2-204ENST00000467041 DNAJC5Q9H3Z4 198 aa41.42■■■■■ 4.22
SSR2-204ENST00000467041 WDR62O43379 1518 aa41.37■■■■■ 4.21
SSR2-204ENST00000467041 PRDM2Q13029 1718 aa41.17■■■■■ 4.18
SSR2-204ENST00000467041 URB2Q14146 1524 aaKnown RBP41.09■■■■■ 4.17
SSR2-204ENST00000467041 SUPT5HO00267 1087 aaKnown RBP40.85■■■■■ 4.13
SSR2-204ENST00000467041 TOPBP1Q92547 1522 aa40.75■■■■■ 4.11
SSR2-204ENST00000467041 ABCC8Q09428 1581 aa40.74■■■■■ 4.11
SSR2-204ENST00000467041 DNMBPQ6XZF7 1577 aa40.65■■■■■ 4.1
SSR2-204ENST00000467041 IFT140Q96RY7 1462 aa40.62■■■■■ 4.09
SSR2-204ENST00000467041 ZNF608Q9ULD9 1512 aaPredicted RBP40.48■■■■■ 4.07
SSR2-204ENST00000467041 POLA1P09884 1462 aaPredicted RBP40.38■■■■■ 4.05
SSR2-204ENST00000467041 TARBP1Q13395 1621 aaKnown RBP40.33■■■■■ 4.05
SSR2-204ENST00000467041 OSCARQ8IYS5 282 aa40.31■■■■■ 4.04
SSR2-204ENST00000467041 CUX1P39880 1505 aa40.26■■■■■ 4.04
SSR2-204ENST00000467041 EIF4G3O43432 1585 aaKnown RBP40.25■■■■■ 4.03
SSR2-204ENST00000467041 SOGA1O94964 1423 aa40.23■■■■■ 4.03
SSR2-204ENST00000467041 RAD54L2Q9Y4B4 1467 aa40.22■■■■■ 4.03
SSR2-204ENST00000467041 AQRO60306 1485 aaKnown RBP eCLIP40.21■■■■■ 4.03
SSR2-204ENST00000467041 FGD5Q6ZNL6 1462 aa40.2■■■■■ 4.03
SSR2-204ENST00000467041 TDRD9Q8NDG6 1382 aaKnown RBP40.07■■■■■ 4
SSR2-204ENST00000467041 WDR97A6NE52 1622 aa39.97■■■■□ 3.99
SSR2-204ENST00000467041 WRNQ14191 1432 aaPredicted RBP eCLIP39.84■■■■□ 3.97
SSR2-204ENST00000467041 FBLN2P98095 1184 aa39.84■■■■□ 3.97
SSR2-204ENST00000467041 CHD1O14646 1710 aa39.82■■■■□ 3.97
SSR2-204ENST00000467041 TRIM41Q8WV44 630 aa39.81■■■■□ 3.96
SSR2-204ENST00000467041 GRIN2BQ13224 1484 aa39.8■■■■□ 3.96
SSR2-204ENST00000467041 ABCA10Q8WWZ4 1543 aa39.8■■■■□ 3.96
SSR2-204ENST00000467041 SNAPC4Q5SXM2 1469 aa39.79■■■■□ 3.96
SSR2-204ENST00000467041 TOP2BQ02880 1626 aa39.78■■■■□ 3.96
SSR2-204ENST00000467041 BIVM-ERCC5R4GMW8 1640 aa39.76■■■■□ 3.96
SSR2-204ENST00000467041 SYNJ1O43426 1573 aa39.74■■■■□ 3.95
SSR2-204ENST00000467041 GAPVD1Q14C86 1478 aa39.74■■■■□ 3.95
SSR2-204ENST00000467041 MAGI1Q96QZ7 1491 aaPredicted RBP39.74■■■■□ 3.95
SSR2-204ENST00000467041 CHMP7Q8WUX9 453 aaPredicted RBP39.66■■■■□ 3.94
SSR2-204ENST00000467041 ABCA5Q8WWZ7 1642 aa39.65■■■■□ 3.94
SSR2-204ENST00000467041 RIMBP3CA6NJZ7 1639 aa39.64■■■■□ 3.94
SSR2-204ENST00000467041 RIMBP3BA6NNM3 1639 aa39.64■■■■□ 3.94
SSR2-204ENST00000467041 RIMBP3Q9UFD9 1639 aa39.64■■■■□ 3.94
SSR2-204ENST00000467041 PBRM1Q86U86 1689 aa39.61■■■■□ 3.93
SSR2-204ENST00000467041 ARHGEF11O15085 1522 aa39.6■■■■□ 3.93
SSR2-204ENST00000467041 SYNJ2O15056 1496 aa39.59■■■■□ 3.93
SSR2-204ENST00000467041 CLASP1Q7Z460 1538 aa39.42■■■■□ 3.9
SSR2-204ENST00000467041 CYB5RLQ6IPT4 315 aa39.32■■■■□ 3.89
SSR2-204ENST00000467041 ERICH3Q5RHP9 1530 aa39.3■■■■□ 3.88
SSR2-204ENST00000467041 ADAMTS12P58397 1594 aa39.3■■■■□ 3.88
SSR2-204ENST00000467041 GRIN2AQ12879 1464 aa39.28■■■■□ 3.88
SSR2-204ENST00000467041 FHAD1B1AJZ9 1412 aa39.27■■■■□ 3.88
SSR2-204ENST00000467041 ARAP1Q96P48 1450 aa39.24■■■■□ 3.87
SSR2-204ENST00000467041 NUP160Q12769 1436 aa39.14■■■■□ 3.86
SSR2-204ENST00000467041 CEP170Q5SW79 1584 aa39.08■■■■□ 3.85
SSR2-204ENST00000467041 KIF27Q86VH2 1401 aa39.06■■■■□ 3.84
SSR2-204ENST00000467041 IGF1RP08069 1367 aa38.99■■■■□ 3.83
SSR2-204ENST00000467041 SHROOM2Q13796 1616 aa38.86■■■■□ 3.81
SSR2-204ENST00000467041 ERCC6L2Q5T890 1561 aa38.85■■■■□ 3.81
SSR2-204ENST00000467041 CUL7Q14999 1698 aa38.83■■■■□ 3.81
SSR2-204ENST00000467041 JPH4Q96JJ6 628 aa38.78■■■■□ 3.8
SSR2-204ENST00000467041 CARMIL1Q5VZK9 1371 aa38.73■■■■□ 3.79
Retrieved 100 of 20,778 RNA–protein pairs in 101.7 ms