RNA–Protein interactions for RNA: ENST00000341060.3

TDP2-201, Transcript of tyrosyl-DNA phosphodiesterase 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TDP2, Length 2,120 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP2-201ENST00000341060 NISCHQ9Y2I1 1504 aa30.68■■■□□ 2.5
TDP2-201ENST00000341060 CCDC180Q9P1Z9 1646 aa26.31■■□□□ 1.8
TDP2-201ENST00000341060 ZCCHC6Q5VYS8 1495 aaKnown RBP25.97■■□□□ 1.75
TDP2-201ENST00000341060 SHROOM4Q9ULL8 1493 aa25.81■■□□□ 1.72
TDP2-201ENST00000341060 DCAF1Q9Y4B6 1507 aa25.3■■□□□ 1.64
TDP2-201ENST00000341060 SUPT5HO00267 1087 aaKnown RBP25.25■■□□□ 1.63
TDP2-201ENST00000341060 DCAF8L2P0C7V8 631 aa25.19■■□□□ 1.62
TDP2-201ENST00000341060 ABCC9O60706 1549 aa25.16■■□□□ 1.62
TDP2-201ENST00000341060 MYO15BQ96JP2 1530 aa24.62■■□□□ 1.53
TDP2-201ENST00000341060 CHIC1Q5VXU3 224 aa24.62■■□□□ 1.53
TDP2-201ENST00000341060 NACADO15069 1562 aa24.53■■□□□ 1.52
TDP2-201ENST00000341060 SCRIBQ14160 1630 aa24.42■■□□□ 1.5
TDP2-201ENST00000341060 RB1CC1Q8TDY2 1594 aa24.38■■□□□ 1.49
TDP2-201ENST00000341060 RSF1Q96T23 1441 aaPredicted RBP24.17■■□□□ 1.46
TDP2-201ENST00000341060 UNC13AQ9UPW8 1703 aa23.9■■□□□ 1.42
TDP2-201ENST00000341060 CECR2Q9BXF3 1484 aa23.82■■□□□ 1.4
TDP2-201ENST00000341060 MROH2BQ7Z745 1585 aa23.79■■□□□ 1.4
TDP2-201ENST00000341060 LOC105371045A0A1W2PR82 267 aa23.77■■□□□ 1.4
TDP2-201ENST00000341060 PABPN1Q86U42 306 aaKnown RBP eCLIP23.77■■□□□ 1.4
TDP2-201ENST00000341060 HRCP23327 699 aa23.72■■□□□ 1.39
TDP2-201ENST00000341060 WIZO95785 1651 aa23.7■■□□□ 1.39
TDP2-201ENST00000341060 PCGF6Q9BYE7 350 aa23.68■■□□□ 1.38
TDP2-201ENST00000341060 BICRAQ9NZM4 1560 aa23.68■■□□□ 1.38
TDP2-201ENST00000341060 BAZ1AQ9NRL2 1556 aaPredicted RBP23.63■■□□□ 1.37
TDP2-201ENST00000341060 TRIM41Q8WV44 630 aa23.61■■□□□ 1.37
TDP2-201ENST00000341060 EIF4G1Q04637 1599 aaKnown RBP23.45■■□□□ 1.34
TDP2-201ENST00000341060 SMARCA4P51532 1647 aa23.43■■□□□ 1.34
TDP2-201ENST00000341060 TOP2AP11388 1531 aaKnown RBP23.38■■□□□ 1.33
TDP2-201ENST00000341060 TRIM26Q12899 539 aaPredicted RBP23.36■■□□□ 1.33
TDP2-201ENST00000341060 FAM9AQ8IZU1 332 aaPredicted RBP23.29■■□□□ 1.32
TDP2-201ENST00000341060 SMARCA2P51531 1590 aa23.23■■□□□ 1.31
TDP2-201ENST00000341060 CCDC88BA6NC98 1476 aa23.17■■□□□ 1.3
TDP2-201ENST00000341060 PPARGC1BQ86YN6 1023 aaKnown RBP23.11■■□□□ 1.29
TDP2-201ENST00000341060 ABCC8Q09428 1581 aa23.08■■□□□ 1.29
TDP2-201ENST00000341060 PEG3Q9GZU2 1588 aa23.05■■□□□ 1.28
TDP2-201ENST00000341060 EHMT2Q96KQ7 1210 aa22.99■■□□□ 1.27
TDP2-201ENST00000341060 ATAD2BQ9ULI0 1458 aa22.89■■□□□ 1.25
TDP2-201ENST00000341060 ZEB1P37275 1124 aaPredicted RBP22.87■■□□□ 1.25
TDP2-201ENST00000341060 EEA1Q15075 1411 aa22.82■■□□□ 1.24
TDP2-201ENST00000341060 SOGA1O94964 1423 aa22.79■■□□□ 1.24
TDP2-201ENST00000341060 BAZ1BQ9UIG0 1483 aaKnown RBP22.76■■□□□ 1.23
TDP2-201ENST00000341060 WRNQ14191 1432 aaPredicted RBP eCLIP22.73■■□□□ 1.23
TDP2-201ENST00000341060 CEP162Q5TB80 1403 aa22.7■■□□□ 1.22
TDP2-201ENST00000341060 CC2D2AQ9P2K1 1620 aa22.7■■□□□ 1.22
TDP2-201ENST00000341060 TNIKQ9UKE5 1360 aa22.69■■□□□ 1.22
TDP2-201ENST00000341060 NCAPD3P42695 1498 aa22.68■■□□□ 1.22
TDP2-201ENST00000341060 RUSC2Q8N2Y8 1516 aa22.67■■□□□ 1.22
TDP2-201ENST00000341060 SYNJ1O43426 1573 aa22.66■■□□□ 1.22
TDP2-201ENST00000341060 CSRNP3Q8WYN3 585 aa22.64■■□□□ 1.21
TDP2-201ENST00000341060 GOLGA3Q08378 1498 aa22.6■■□□□ 1.21
TDP2-201ENST00000341060 HMGXB3Q12766 1538 aa22.6■■□□□ 1.21
TDP2-201ENST00000341060 KIF21BO75037 1637 aa22.56■■□□□ 1.2
TDP2-201ENST00000341060 CEP164Q9UPV0 1460 aa22.5■■□□□ 1.19
TDP2-201ENST00000341060 UBTFP17480 764 aaKnown RBP22.48■■□□□ 1.19
TDP2-201ENST00000341060 TOP2BQ02880 1626 aa22.45■■□□□ 1.18
TDP2-201ENST00000341060 BIVM-ERCC5R4GMW8 1640 aa22.42■■□□□ 1.18
TDP2-201ENST00000341060 DNAJC5BQ9UF47 199 aa22.37■■□□□ 1.17
TDP2-201ENST00000341060 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.35■■□□□ 1.17
TDP2-201ENST00000341060 CCER1Q8TC90 406 aaPredicted RBP22.31■■□□□ 1.16
TDP2-201ENST00000341060 CLIP1P30622 1438 aa22.28■■□□□ 1.16
TDP2-201ENST00000341060 RAPGEF2Q9Y4G8 1499 aa22.28■■□□□ 1.16
TDP2-201ENST00000341060 TTBK1Q5TCY1 1321 aaPredicted RBP22.27■■□□□ 1.16
TDP2-201ENST00000341060 VPS8Q8N3P4 1428 aa22.23■■□□□ 1.15
TDP2-201ENST00000341060 PRDM2Q13029 1718 aa22.22■■□□□ 1.15
TDP2-201ENST00000341060 ERICH3Q5RHP9 1530 aa22.21■■□□□ 1.15
TDP2-201ENST00000341060 CUX1P39880 1505 aa22.17■■□□□ 1.14
TDP2-201ENST00000341060 CFTRP13569 1480 aa22.16■■□□□ 1.14
TDP2-201ENST00000341060 PRXQ9BXM0 1461 aa22.14■■□□□ 1.13
TDP2-201ENST00000341060 CADPSQ9ULU8 1353 aa22.13■■□□□ 1.13
TDP2-201ENST00000341060 NESP48681 1621 aa22.05■■□□□ 1.12
TDP2-201ENST00000341060 KIF27Q86VH2 1401 aa22.03■■□□□ 1.12
TDP2-201ENST00000341060 APLP2Q06481 763 aa21.99■■□□□ 1.11
TDP2-201ENST00000341060 ARAP1Q96P48 1450 aa21.98■■□□□ 1.11
TDP2-201ENST00000341060 RANGAP1P46060 587 aaPredicted RBP21.91■■□□□ 1.1
TDP2-201ENST00000341060 LAMC3Q9Y6N6 1575 aa21.91■■□□□ 1.1
TDP2-201ENST00000341060 FANCD2Q9BXW9 1451 aa21.9■■□□□ 1.1
TDP2-201ENST00000341060 HNRNPUL2Q1KMD3 747 aaKnown RBP21.88■■□□□ 1.09
TDP2-201ENST00000341060 DIEXFQ68CQ4 756 aaKnown RBP21.85■■□□□ 1.09
TDP2-201ENST00000341060 CUX2O14529 1486 aa21.8■■□□□ 1.08
TDP2-201ENST00000341060 ARHGAP35Q9NRY4 1499 aa21.8■■□□□ 1.08
TDP2-201ENST00000341060 PDS5BQ9NTI5 1447 aa21.79■■□□□ 1.08
TDP2-201ENST00000341060 FGD5Q6ZNL6 1462 aa21.77■■□□□ 1.08
TDP2-201ENST00000341060 ZNF316A6NFI3 1004 aaPredicted RBP21.74■■□□□ 1.07
TDP2-201ENST00000341060 IGF1RP08069 1367 aa21.74■■□□□ 1.07
TDP2-201ENST00000341060 SCAF1Q9H7N4 1312 aaKnown RBP21.74■■□□□ 1.07
TDP2-201ENST00000341060 RRBP1Q9P2E9 1410 aaKnown RBP21.72■■□□□ 1.07
TDP2-201ENST00000341060 KANK4Q5T7N3 995 aaPredicted RBP21.71■■□□□ 1.07
TDP2-201ENST00000341060 KIF21AQ7Z4S6 1674 aa21.71■■□□□ 1.07
TDP2-201ENST00000341060 CARMIL1Q5VZK9 1371 aa21.65■■□□□ 1.06
TDP2-201ENST00000341060 DNMBPQ6XZF7 1577 aa21.65■■□□□ 1.06
TDP2-201ENST00000341060 CLSPNQ9HAW4 1339 aa21.65■■□□□ 1.06
TDP2-201ENST00000341060 MAP3K1Q13233 1512 aa21.64■■□□□ 1.05
TDP2-201ENST00000341060 URB2Q14146 1524 aaKnown RBP21.63■■□□□ 1.05
TDP2-201ENST00000341060 TOPBP1Q92547 1522 aa21.63■■□□□ 1.05
TDP2-201ENST00000341060 ACIN1Q9UKV3 1341 aaKnown RBP21.62■■□□□ 1.05
TDP2-201ENST00000341060 TIAM1Q13009 1591 aa21.61■■□□□ 1.05
TDP2-201ENST00000341060 DHX57Q6P158 1386 aaKnown RBP21.59■■□□□ 1.05
TDP2-201ENST00000341060 ABCA10Q8WWZ4 1543 aa21.57■■□□□ 1.04
TDP2-201ENST00000341060 ERCC6Q03468 1493 aa21.57■■□□□ 1.04
TDP2-201ENST00000341060 CCNB3Q8WWL7 1395 aa21.56■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms