RNA–Protein interactions for RNA: ENST00000548211.1

RPAP3-205, Transcript of RNA polymerase II associated protein 3, human

TSL 2

Gene RPAP3, Length 555 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RPAP3-205	ENST00000548211	AEBP2	Q6ZN18	517 aa	Predicted RBP	26.87	■■□□□ 1.89
RPAP3-205	ENST00000548211	CHIC1	Q5VXU3	224 aa		25.59	■■□□□ 1.69
RPAP3-205	ENST00000548211	SENP3	Q9H4L4	574 aa	Predicted RBP	22.75	■■□□□ 1.23
RPAP3-205	ENST00000548211	PHF23	Q9BUL5	403 aa	Predicted RBP	22.57	■■□□□ 1.2
RPAP3-205	ENST00000548211	FOXD1	Q16676	465 aa		21.28	■■□□□ 1
RPAP3-205	ENST00000548211	PLPPR3	Q6T4P5	718 aa		20.48	■□□□□ 0.87
RPAP3-205	ENST00000548211	PPP6R1	Q9UPN7	881 aa		20.1	■□□□□ 0.81
RPAP3-205	ENST00000548211	ADRA2B	P18089	450 aa		20.02	■□□□□ 0.8
RPAP3-205	ENST00000548211	PIAS4	Q8N2W9	510 aa	Predicted RBP	19.89	■□□□□ 0.77
RPAP3-205	ENST00000548211	MSH5	O43196	834 aa		19.73	■□□□□ 0.75
RPAP3-205	ENST00000548211	POTED	Q86YR6	584 aa		19.09	■□□□□ 0.65
RPAP3-205	ENST00000548211	MAPK8IP2	Q13387	824 aa	Predicted RBP	18.38	■□□□□ 0.53
RPAP3-205	ENST00000548211	SCAF1	Q9H7N4	1312 aa	Known RBP	18.15	■□□□□ 0.5
RPAP3-205	ENST00000548211	DMRT2	Q9Y5R5	561 aa		18.09	■□□□□ 0.49
RPAP3-205	ENST00000548211	PPP4R3CP	Q6ZMV5	832 aa		18.03	■□□□□ 0.48
RPAP3-205	ENST00000548211	CNKSR2	Q8WXI2	1034 aa		17.6	■□□□□ 0.41
RPAP3-205	ENST00000548211	HOXD11	P31277	338 aa	Predicted RBP	17.5	■□□□□ 0.39
RPAP3-205	ENST00000548211	DCAF8L1	A6NGE4	600 aa		17.4	■□□□□ 0.38
RPAP3-205	ENST00000548211	RNF216	Q9NWF9	866 aa	Predicted RBP	17.39	■□□□□ 0.37
RPAP3-205	ENST00000548211	NCBP3	Q53F19	620 aa	Known RBP	17.29	■□□□□ 0.36
RPAP3-205	ENST00000548211	NPM3	O75607	178 aa	Known RBP	17.15	■□□□□ 0.34
RPAP3-205	ENST00000548211	KCNA4	P22459	653 aa		17.01	■□□□□ 0.31
RPAP3-205	ENST00000548211	RNF39	Q9H2S5	420 aa		16.92	■□□□□ 0.3
RPAP3-205	ENST00000548211	CACNB1	Q02641	598 aa	Predicted RBP	16.9	■□□□□ 0.3
RPAP3-205	ENST00000548211	DNAJC5B	Q9UF47	199 aa		16.76	■□□□□ 0.27
RPAP3-205	ENST00000548211	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	16.68	■□□□□ 0.26
RPAP3-205	ENST00000548211	C1QBP	Q07021	282 aa	Known RBP	16.63	■□□□□ 0.25
RPAP3-205	ENST00000548211		U3KPZ7	1027 aa	Predicted RBP	16.38	■□□□□ 0.21
RPAP3-205	ENST00000548211	SLC4A2	P04920	1241 aa		16.37	■□□□□ 0.21
RPAP3-205	ENST00000548211	SPINK5	Q9NQ38	1064 aa	Predicted RBP	16.14	■□□□□ 0.17
RPAP3-205	ENST00000548211	CAPN15	O75808	1086 aa		16.04	■□□□□ 0.16
RPAP3-205	ENST00000548211	SLC4A1AP	Q9BWU0	796 aa	Known RBP	16.03	■□□□□ 0.16
RPAP3-205	ENST00000548211	DSG3	P32926	999 aa		15.92	■□□□□ 0.14
RPAP3-205	ENST00000548211	TRH	P20396	242 aa	Predicted RBP	15.85	■□□□□ 0.13
RPAP3-205	ENST00000548211	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	15.84	■□□□□ 0.13
RPAP3-205	ENST00000548211	HNRNPUL2	Q1KMD3	747 aa	Known RBP	15.84	■□□□□ 0.13
RPAP3-205	ENST00000548211	SAMD1	Q6SPF0	538 aa	Predicted RBP	15.79	■□□□□ 0.12
RPAP3-205	ENST00000548211	MYCN	P04198	464 aa	Predicted RBP	15.78	■□□□□ 0.12
RPAP3-205	ENST00000548211	APLP2	Q06481	763 aa		15.76	■□□□□ 0.11
RPAP3-205	ENST00000548211	ABCB7	O75027	752 aa		15.75	■□□□□ 0.11
RPAP3-205	ENST00000548211	FOXD4L1	Q9NU39	408 aa		15.74	■□□□□ 0.11
RPAP3-205	ENST00000548211	ZNF219	Q9P2Y4	722 aa	Predicted RBP	15.73	■□□□□ 0.11
RPAP3-205	ENST00000548211	ZBTB22	O15209	634 aa		15.68	■□□□□ 0.1
RPAP3-205	ENST00000548211	ATF5	Q9Y2D1	282 aa	Predicted RBP	15.56	■□□□□ 0.08
RPAP3-205	ENST00000548211	POLA2	Q14181	598 aa		15.46	■□□□□ 0.07
RPAP3-205	ENST00000548211	ATXN8OS	P0DMR3	200 aa		15.17	■□□□□ 0.02
RPAP3-205	ENST00000548211	CSRNP3	Q8WYN3	585 aa		15.08	■□□□□ 0
RPAP3-205	ENST00000548211	RBM42	Q9BTD8	480 aa	Known RBP	15.07	■□□□□ 0
RPAP3-205	ENST00000548211	ZBTB12	Q9Y330	459 aa	Predicted RBP	15.02	■□□□□ -0
RPAP3-205	ENST00000548211	EHMT2	Q96KQ7	1210 aa		14.99	□□□□□ -0.01
RPAP3-205	ENST00000548211	POTEH	Q6S545	545 aa		14.97	□□□□□ -0.01
RPAP3-205	ENST00000548211	OSCAR	Q8IYS5	282 aa		14.97	□□□□□ -0.01
RPAP3-205	ENST00000548211	MKRN4P	Q13434	485 aa	Predicted RBP	14.81	□□□□□ -0.04
RPAP3-205	ENST00000548211	AKT1S1	Q96B36	256 aa		14.81	□□□□□ -0.04
RPAP3-205	ENST00000548211	FBLN2	P98095	1184 aa		14.77	□□□□□ -0.05
RPAP3-205	ENST00000548211	CHRDL2	Q6WN34	429 aa		14.76	□□□□□ -0.05
RPAP3-205	ENST00000548211	REM2	Q8IYK8	340 aa	Predicted RBP	14.73	□□□□□ -0.05
RPAP3-205	ENST00000548211	SPDYE2B	A6NHP3	402 aa		14.63	□□□□□ -0.07
RPAP3-205	ENST00000548211	SPDYE6	P0CI01	402 aa		14.63	□□□□□ -0.07
RPAP3-205	ENST00000548211	SPDYE2	Q495Y8	402 aa		14.63	□□□□□ -0.07
RPAP3-205	ENST00000548211	PITPNM1	O00562	1244 aa		14.58	□□□□□ -0.08
RPAP3-205	ENST00000548211	ZNF692	Q9BU19	519 aa	Predicted RBP	14.53	□□□□□ -0.08
RPAP3-205	ENST00000548211	SSUH2	Q9Y2M2	353 aa		14.49	□□□□□ -0.09
RPAP3-205	ENST00000548211	PIP4P2	Q8N4L2	257 aa		14.48	□□□□□ -0.09
RPAP3-205	ENST00000548211	FXR2	P51116	673 aa	Known RBP eCLIP	14.39	□□□□□ -0.11
RPAP3-205	ENST00000548211	CLEC11A	Q9Y240	323 aa		14.38	□□□□□ -0.11
RPAP3-205	ENST00000548211	PABPN1	Q86U42	306 aa	Known RBP eCLIP	14.34	□□□□□ -0.11
RPAP3-205	ENST00000548211	SPDYE1	Q8NFV5	336 aa	Predicted RBP	14.33	□□□□□ -0.12
RPAP3-205	ENST00000548211	PRKAR2A	P13861	404 aa	Known RBP	14.2	□□□□□ -0.14
RPAP3-205	ENST00000548211	HAX1	O00165	279 aa		14.16	□□□□□ -0.14
RPAP3-205	ENST00000548211	SPDYE4	A6NLX3	237 aa		14.14	□□□□□ -0.15
RPAP3-205	ENST00000548211	CHADL	Q6NUI6	762 aa		14.14	□□□□□ -0.15
RPAP3-205	ENST00000548211	PRR29	P0C7W0	189 aa		14.12	□□□□□ -0.15
RPAP3-205	ENST00000548211	EVX2	Q03828	476 aa		14.1	□□□□□ -0.15
RPAP3-205	ENST00000548211	SP7	Q8TDD2	431 aa	Predicted RBP	14.09	□□□□□ -0.15
RPAP3-205	ENST00000548211	C19orf67	A6NJJ6	358 aa		13.92	□□□□□ -0.18
RPAP3-205	ENST00000548211	STAG3	Q9UJ98	1225 aa		13.88	□□□□□ -0.19
RPAP3-205	ENST00000548211	FARP1	Q9Y4F1	1045 aa	Predicted RBP	13.87	□□□□□ -0.19
RPAP3-205	ENST00000548211	CREBZF	Q9NS37	354 aa		13.86	□□□□□ -0.19
RPAP3-205	ENST00000548211	PROM2	Q8N271	834 aa		13.81	□□□□□ -0.2
RPAP3-205	ENST00000548211	CD44	P16070	742 aa	Known RBP	13.74	□□□□□ -0.21
RPAP3-205	ENST00000548211	GABBR2	O75899	941 aa		13.71	□□□□□ -0.21
RPAP3-205	ENST00000548211	MNX1	P50219	401 aa	Predicted RBP	13.65	□□□□□ -0.22
RPAP3-205	ENST00000548211	FKBP8	Q14318	412 aa		13.64	□□□□□ -0.23
RPAP3-205	ENST00000548211	ZRANB1	Q9UGI0	708 aa		13.59	□□□□□ -0.23
RPAP3-205	ENST00000548211	NPM1	P06748	294 aa	Known RBP eCLIP	13.51	□□□□□ -0.25
RPAP3-205	ENST00000548211	ZNF579	Q8NAF0	562 aa	Known RBP	13.51	□□□□□ -0.25
RPAP3-205	ENST00000548211	MIER1	Q8N108	512 aa		13.48	□□□□□ -0.25
RPAP3-205	ENST00000548211	POTEI	P0CG38	1075 aa		13.47	□□□□□ -0.25
RPAP3-205	ENST00000548211	PHF12	Q96QT6	1004 aa		13.45	□□□□□ -0.26
RPAP3-205	ENST00000548211	PAK3	O75914	559 aa	Predicted RBP	13.42	□□□□□ -0.26
RPAP3-205	ENST00000548211	GALR2	O43603	387 aa	Predicted RBP	13.41	□□□□□ -0.26
RPAP3-205	ENST00000548211	CLCN6	P51797	869 aa		13.38	□□□□□ -0.27
RPAP3-205	ENST00000548211	TSPYL2	Q9H2G4	693 aa	Predicted RBP	13.38	□□□□□ -0.27
RPAP3-205	ENST00000548211	PLCD3	Q8N3E9	789 aa		13.37	□□□□□ -0.27
RPAP3-205	ENST00000548211	PLEKHG5	O94827	1062 aa		13.34	□□□□□ -0.27
RPAP3-205	ENST00000548211	DCBLD2	Q96PD2	775 aa		13.33	□□□□□ -0.28
RPAP3-205	ENST00000548211	RASEF	Q8IZ41	740 aa		13.31	□□□□□ -0.28
RPAP3-205	ENST00000548211	CCDC61	Q9Y6R9	512 aa		13.28	□□□□□ -0.28
RPAP3-205	ENST00000548211	MS4A3	Q96HJ5	214 aa		13.26	□□□□□ -0.29

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