Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
ALMS1Q8TCU4 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC18.36■□□□□ 0.53
ALMS1Q8TCU4 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ALMS1Q8TCU4 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC18.36■□□□□ 0.53
ALMS1Q8TCU4 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ALMS1Q8TCU4 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC18.35■□□□□ 0.53
ALMS1Q8TCU4 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
ALMS1Q8TCU4 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ALMS1Q8TCU4 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC18.34■□□□□ 0.53
ALMS1Q8TCU4 CHML-204ENST00000638121 920 ntTSL 2 BASIC18.34■□□□□ 0.53
ALMS1Q8TCU4 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC18.34■□□□□ 0.53
ALMS1Q8TCU4 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ALMS1Q8TCU4 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC18.33■□□□□ 0.53
ALMS1Q8TCU4 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ALMS1Q8TCU4 GPX1-201ENST00000419349 1106 ntBASIC18.32■□□□□ 0.52
ALMS1Q8TCU4 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC18.32■□□□□ 0.52
ALMS1Q8TCU4 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ALMS1Q8TCU4 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
ALMS1Q8TCU4 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
ALMS1Q8TCU4 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ALMS1Q8TCU4 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ALMS1Q8TCU4 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
ALMS1Q8TCU4 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ALMS1Q8TCU4 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC18.29■□□□□ 0.52
ALMS1Q8TCU4 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ALMS1Q8TCU4 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
ALMS1Q8TCU4 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ALMS1Q8TCU4 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
ALMS1Q8TCU4 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
ALMS1Q8TCU4 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
ALMS1Q8TCU4 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
ALMS1Q8TCU4 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
ALMS1Q8TCU4 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC18.27■□□□□ 0.51
ALMS1Q8TCU4 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC18.27■□□□□ 0.51
ALMS1Q8TCU4 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC18.26■□□□□ 0.51
ALMS1Q8TCU4 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC18.25■□□□□ 0.51
ALMS1Q8TCU4 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
ALMS1Q8TCU4 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
ALMS1Q8TCU4 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
ALMS1Q8TCU4 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
ALMS1Q8TCU4 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
ALMS1Q8TCU4 NTF6A-201ENST00000591175 560 ntBASIC18.23■□□□□ 0.51
ALMS1Q8TCU4 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
ALMS1Q8TCU4 TPT1-202ENST00000379055 948 ntTSL 2 BASIC18.23■□□□□ 0.51
ALMS1Q8TCU4 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
ALMS1Q8TCU4 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ALMS1Q8TCU4 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ALMS1Q8TCU4 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
ALMS1Q8TCU4 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC18.2■□□□□ 0.5
ALMS1Q8TCU4 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC18.19■□□□□ 0.5
ALMS1Q8TCU4 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC18.19■□□□□ 0.5
ALMS1Q8TCU4 CEP120-209ENST00000515110 606 ntTSL 3 BASIC18.19■□□□□ 0.5
ALMS1Q8TCU4 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
ALMS1Q8TCU4 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
ALMS1Q8TCU4 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
ALMS1Q8TCU4 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
ALMS1Q8TCU4 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
ALMS1Q8TCU4 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
ALMS1Q8TCU4 CHST11-202ENST00000546689 756 ntTSL 2 BASIC18.18■□□□□ 0.5
ALMS1Q8TCU4 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
ALMS1Q8TCU4 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC18.17■□□□□ 0.5
ALMS1Q8TCU4 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
ALMS1Q8TCU4 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
ALMS1Q8TCU4 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC18.15■□□□□ 0.5
ALMS1Q8TCU4 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
ALMS1Q8TCU4 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC18.15■□□□□ 0.5
ALMS1Q8TCU4 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC18.15■□□□□ 0.5
ALMS1Q8TCU4 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ALMS1Q8TCU4 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
ALMS1Q8TCU4 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
ALMS1Q8TCU4 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
ALMS1Q8TCU4 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ALMS1Q8TCU4 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ALMS1Q8TCU4 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ALMS1Q8TCU4 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ALMS1Q8TCU4 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC18.11■□□□□ 0.49
ALMS1Q8TCU4 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ALMS1Q8TCU4 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
ALMS1Q8TCU4 AC012354.3-201ENST00000623734 483 ntBASIC18.09■□□□□ 0.49
ALMS1Q8TCU4 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC18.09■□□□□ 0.49
ALMS1Q8TCU4 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
ALMS1Q8TCU4 AL033527.3-201ENST00000566366 1196 ntBASIC18.09■□□□□ 0.49
ALMS1Q8TCU4 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
ALMS1Q8TCU4 LINC00273-201ENST00000539813 1452 ntBASIC18.09■□□□□ 0.49
ALMS1Q8TCU4 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
ALMS1Q8TCU4 GFER-205ENST00000569451 517 ntTSL 5 BASIC18.08■□□□□ 0.49
ALMS1Q8TCU4 EI24-212ENST00000615917 1407 ntTSL 2 BASIC18.08■□□□□ 0.48
ALMS1Q8TCU4 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
ALMS1Q8TCU4 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC18.08■□□□□ 0.48
ALMS1Q8TCU4 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
ALMS1Q8TCU4 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
ALMS1Q8TCU4 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC18.07■□□□□ 0.48
ALMS1Q8TCU4 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
ALMS1Q8TCU4 AC008813.1-201ENST00000536597 885 ntBASIC18.07■□□□□ 0.48
ALMS1Q8TCU4 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
ALMS1Q8TCU4 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
ALMS1Q8TCU4 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
ALMS1Q8TCU4 AC018358.1-201ENST00000631079 1402 ntBASIC18.05■□□□□ 0.48
ALMS1Q8TCU4 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
ALMS1Q8TCU4 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms