Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRAV3A0A0B4J244 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRAV3A0A0B4J244 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC21.11■□□□□ 0.97
TRAV3A0A0B4J244 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRAV3A0A0B4J244 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRAV3A0A0B4J244 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRAV3A0A0B4J244 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRAV3A0A0B4J244 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC21.09■□□□□ 0.97
TRAV3A0A0B4J244 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC21.09■□□□□ 0.97
TRAV3A0A0B4J244 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC21.09■□□□□ 0.97
TRAV3A0A0B4J244 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRAV3A0A0B4J244 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRAV3A0A0B4J244 AC010864.1-201ENST00000609407 1511 ntBASIC21.09■□□□□ 0.97
TRAV3A0A0B4J244 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRAV3A0A0B4J244 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TRAV3A0A0B4J244 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRAV3A0A0B4J244 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
TRAV3A0A0B4J244 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.96
TRAV3A0A0B4J244 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC21.07■□□□□ 0.96
TRAV3A0A0B4J244 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRAV3A0A0B4J244 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TRAV3A0A0B4J244 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TRAV3A0A0B4J244 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC21.07■□□□□ 0.96
TRAV3A0A0B4J244 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TRAV3A0A0B4J244 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRAV3A0A0B4J244 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRAV3A0A0B4J244 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV3A0A0B4J244 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV3A0A0B4J244 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV3A0A0B4J244 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRAV3A0A0B4J244 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC21.05■□□□□ 0.96
TRAV3A0A0B4J244 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRAV3A0A0B4J244 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRAV3A0A0B4J244 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
TRAV3A0A0B4J244 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRAV3A0A0B4J244 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV3A0A0B4J244 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TRAV3A0A0B4J244 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAV3A0A0B4J244 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TRAV3A0A0B4J244 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAV3A0A0B4J244 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAV3A0A0B4J244 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC21.02■□□□□ 0.96
TRAV3A0A0B4J244 AC142086.6-201ENST00000621154 1765 ntBASIC21.01■□□□□ 0.95
TRAV3A0A0B4J244 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC21.01■□□□□ 0.95
TRAV3A0A0B4J244 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV3A0A0B4J244 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRAV3A0A0B4J244 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
TRAV3A0A0B4J244 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
TRAV3A0A0B4J244 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC21■□□□□ 0.95
TRAV3A0A0B4J244 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC20.99■□□□□ 0.95
TRAV3A0A0B4J244 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRAV3A0A0B4J244 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRAV3A0A0B4J244 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRAV3A0A0B4J244 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRAV3A0A0B4J244 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
TRAV3A0A0B4J244 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRAV3A0A0B4J244 DRD5P2-201ENST00000421395 2012 ntBASIC20.97■□□□□ 0.95
TRAV3A0A0B4J244 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
TRAV3A0A0B4J244 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC20.97■□□□□ 0.95
TRAV3A0A0B4J244 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV3A0A0B4J244 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV3A0A0B4J244 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV3A0A0B4J244 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV3A0A0B4J244 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
TRAV3A0A0B4J244 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TRAV3A0A0B4J244 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRAV3A0A0B4J244 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC20.95■□□□□ 0.94
TRAV3A0A0B4J244 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRAV3A0A0B4J244 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRAV3A0A0B4J244 AL391121.1-201ENST00000607967 1349 ntBASIC20.94■□□□□ 0.94
TRAV3A0A0B4J244 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRAV3A0A0B4J244 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRAV3A0A0B4J244 CAHM-201ENST00000604200 896 ntBASIC20.93■□□□□ 0.94
TRAV3A0A0B4J244 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAV3A0A0B4J244 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAV3A0A0B4J244 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC20.91■□□□□ 0.94
TRAV3A0A0B4J244 EBPL-202ENST00000378268 680 ntTSL 3 BASIC20.91■□□□□ 0.94
TRAV3A0A0B4J244 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRAV3A0A0B4J244 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC20.91■□□□□ 0.94
TRAV3A0A0B4J244 AC136428.2-201ENST00000563187 214 ntBASIC20.91■□□□□ 0.94
TRAV3A0A0B4J244 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC20.9■□□□□ 0.94
TRAV3A0A0B4J244 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC20.9■□□□□ 0.94
TRAV3A0A0B4J244 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC20.9■□□□□ 0.94
TRAV3A0A0B4J244 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
TRAV3A0A0B4J244 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
TRAV3A0A0B4J244 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
TRAV3A0A0B4J244 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
TRAV3A0A0B4J244 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRAV3A0A0B4J244 DENR-202ENST00000455982 1052 ntTSL 5 BASIC20.89■□□□□ 0.93
TRAV3A0A0B4J244 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TRAV3A0A0B4J244 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TRAV3A0A0B4J244 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRAV3A0A0B4J244 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRAV3A0A0B4J244 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRAV3A0A0B4J244 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRAV3A0A0B4J244 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRAV3A0A0B4J244 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC20.87■□□□□ 0.93
TRAV3A0A0B4J244 AC097358.2-201ENST00000607541 1159 ntBASIC20.87■□□□□ 0.93
TRAV3A0A0B4J244 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRAV3A0A0B4J244 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms