Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLCF1Q9UBD9 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLCF1Q9UBD9 ESRRAP1-201ENST00000400596 1257 ntBASIC18.23■□□□□ 0.51
CLCF1Q9UBD9 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC18.23■□□□□ 0.51
CLCF1Q9UBD9 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CLCF1Q9UBD9 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.23■□□□□ 0.51
CLCF1Q9UBD9 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.23■□□□□ 0.51
CLCF1Q9UBD9 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLCF1Q9UBD9 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLCF1Q9UBD9 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLCF1Q9UBD9 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLCF1Q9UBD9 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLCF1Q9UBD9 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLCF1Q9UBD9 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CLCF1Q9UBD9 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CLCF1Q9UBD9 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
CLCF1Q9UBD9 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CLCF1Q9UBD9 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLCF1Q9UBD9 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CLCF1Q9UBD9 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLCF1Q9UBD9 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLCF1Q9UBD9 AL356652.1-201ENST00000615962 565 ntBASIC18.22■□□□□ 0.51
CLCF1Q9UBD9 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC18.22■□□□□ 0.51
CLCF1Q9UBD9 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC18.22■□□□□ 0.51
CLCF1Q9UBD9 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLCF1Q9UBD9 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
CLCF1Q9UBD9 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CLCF1Q9UBD9 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CLCF1Q9UBD9 AL049796.1-201ENST00000565336 1766 ntBASIC18.22■□□□□ 0.51
CLCF1Q9UBD9 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLCF1Q9UBD9 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC18.22■□□□□ 0.51
CLCF1Q9UBD9 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
CLCF1Q9UBD9 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC18.21■□□□□ 0.51
CLCF1Q9UBD9 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLCF1Q9UBD9 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CLCF1Q9UBD9 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC18.21■□□□□ 0.51
CLCF1Q9UBD9 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
CLCF1Q9UBD9 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLCF1Q9UBD9 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC18.21■□□□□ 0.51
CLCF1Q9UBD9 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLCF1Q9UBD9 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLCF1Q9UBD9 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.21■□□□□ 0.51
CLCF1Q9UBD9 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.21■□□□□ 0.51
CLCF1Q9UBD9 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CLCF1Q9UBD9 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.21■□□□□ 0.51
CLCF1Q9UBD9 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.21■□□□□ 0.51
CLCF1Q9UBD9 AP003097.1-201ENST00000530657 1135 ntBASIC18.21■□□□□ 0.51
CLCF1Q9UBD9 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.21■□□□□ 0.51
CLCF1Q9UBD9 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.21■□□□□ 0.51
CLCF1Q9UBD9 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.21■□□□□ 0.51
CLCF1Q9UBD9 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLCF1Q9UBD9 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLCF1Q9UBD9 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLCF1Q9UBD9 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.21■□□□□ 0.51
CLCF1Q9UBD9 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
CLCF1Q9UBD9 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC18.21■□□□□ 0.5
CLCF1Q9UBD9 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CLCF1Q9UBD9 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLCF1Q9UBD9 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
CLCF1Q9UBD9 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLCF1Q9UBD9 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.2■□□□□ 0.5
CLCF1Q9UBD9 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLCF1Q9UBD9 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLCF1Q9UBD9 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLCF1Q9UBD9 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18.2■□□□□ 0.5
CLCF1Q9UBD9 AC026366.1-201ENST00000488803 879 ntBASIC18.2■□□□□ 0.5
CLCF1Q9UBD9 PNMA6B-201ENST00000538162 1200 ntBASIC18.2■□□□□ 0.5
CLCF1Q9UBD9 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.2■□□□□ 0.5
CLCF1Q9UBD9 C2orf69P4-201ENST00000565394 541 ntBASIC18.2■□□□□ 0.5
CLCF1Q9UBD9 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLCF1Q9UBD9 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLCF1Q9UBD9 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CLCF1Q9UBD9 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
CLCF1Q9UBD9 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC18.2■□□□□ 0.5
CLCF1Q9UBD9 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLCF1Q9UBD9 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLCF1Q9UBD9 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLCF1Q9UBD9 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLCF1Q9UBD9 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
CLCF1Q9UBD9 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLCF1Q9UBD9 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC18.19■□□□□ 0.5
CLCF1Q9UBD9 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLCF1Q9UBD9 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLCF1Q9UBD9 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CLCF1Q9UBD9 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLCF1Q9UBD9 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CLCF1Q9UBD9 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLCF1Q9UBD9 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLCF1Q9UBD9 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CLCF1Q9UBD9 KRT18P29-201ENST00000397031 1267 ntBASIC18.19■□□□□ 0.5
CLCF1Q9UBD9 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.19■□□□□ 0.5
CLCF1Q9UBD9 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CLCF1Q9UBD9 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CLCF1Q9UBD9 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CLCF1Q9UBD9 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
CLCF1Q9UBD9 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLCF1Q9UBD9 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CLCF1Q9UBD9 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLCF1Q9UBD9 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.19■□□□□ 0.5
CLCF1Q9UBD9 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms