RNA–Protein interactions for RNA: ENST00000341472.9

SYNE2-201, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,132 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-201ENST00000341472 NISCHQ9Y2I1 1504 aa49.44■■■■■ 5.5
SYNE2-201ENST00000341472 CCDC180Q9P1Z9 1646 aa43.94■■■■■ 4.62
SYNE2-201ENST00000341472 ABCC9O60706 1549 aa43.78■■■■■ 4.6
SYNE2-201ENST00000341472 DCAF8L2P0C7V8 631 aa41.86■■■■■ 4.29
SYNE2-201ENST00000341472 RB1CC1Q8TDY2 1594 aa41.76■■■■■ 4.28
SYNE2-201ENST00000341472 NACADO15069 1562 aa41.62■■■■■ 4.25
SYNE2-201ENST00000341472 MYO15BQ96JP2 1530 aa41.19■■■■■ 4.18
SYNE2-201ENST00000341472 ZCCHC6Q5VYS8 1495 aaKnown RBP41.01■■■■■ 4.16
SYNE2-201ENST00000341472 PABPN1Q86U42 306 aaKnown RBP eCLIP40.99■■■■■ 4.15
SYNE2-201ENST00000341472 DCAF1Q9Y4B6 1507 aa40.83■■■■■ 4.13
SYNE2-201ENST00000341472 DNAJC5BQ9UF47 199 aa40.8■■■■■ 4.12
SYNE2-201ENST00000341472 UNC13AQ9UPW8 1703 aa40.53■■■■■ 4.08
SYNE2-201ENST00000341472 BICRAQ9NZM4 1560 aa40.48■■■■■ 4.07
SYNE2-201ENST00000341472 SCRIBQ14160 1630 aa40.17■■■■■ 4.02
SYNE2-201ENST00000341472 SHROOM4Q9ULL8 1493 aa40.02■■■■■ 4
SYNE2-201ENST00000341472 EIF4G1Q04637 1599 aaKnown RBP39.48■■■■□ 3.91
SYNE2-201ENST00000341472 CC2D2AQ9P2K1 1620 aa39.44■■■■□ 3.9
SYNE2-201ENST00000341472 CECR2Q9BXF3 1484 aa39.4■■■■□ 3.9
SYNE2-201ENST00000341472 NCAPD3P42695 1498 aa38.52■■■■□ 3.76
SYNE2-201ENST00000341472 ATAD2BQ9ULI0 1458 aa38.43■■■■□ 3.74
SYNE2-201ENST00000341472 SMARCA4P51532 1647 aa38.35■■■■□ 3.73
SYNE2-201ENST00000341472 BAZ1AQ9NRL2 1556 aaPredicted RBP38.31■■■■□ 3.72
SYNE2-201ENST00000341472 SMARCA2P51531 1590 aa38.28■■■■□ 3.72
SYNE2-201ENST00000341472 HMGXB3Q12766 1538 aa38.11■■■■□ 3.69
SYNE2-201ENST00000341472 MROH2BQ7Z745 1585 aa38.09■■■■□ 3.69
SYNE2-201ENST00000341472 BAZ1BQ9UIG0 1483 aaKnown RBP38.06■■■■□ 3.68
SYNE2-201ENST00000341472 PEG3Q9GZU2 1588 aa37.98■■■■□ 3.67
SYNE2-201ENST00000341472 ERCC6Q03468 1493 aa37.77■■■■□ 3.64
SYNE2-201ENST00000341472 NESP48681 1621 aa37.69■■■■□ 3.62
SYNE2-201ENST00000341472 RSF1Q96T23 1441 aaPredicted RBP37.56■■■■□ 3.6
SYNE2-201ENST00000341472 WIZO95785 1651 aa37.55■■■■□ 3.6
SYNE2-201ENST00000341472 CUX2O14529 1486 aa37.5■■■■□ 3.59
SYNE2-201ENST00000341472 LAMC3Q9Y6N6 1575 aa37.43■■■■□ 3.58
SYNE2-201ENST00000341472 CADPSQ9ULU8 1353 aa37.42■■■■□ 3.58
SYNE2-201ENST00000341472 PDS5BQ9NTI5 1447 aa37.38■■■■□ 3.57
SYNE2-201ENST00000341472 DNAJC5Q9H3Z4 198 aa37.17■■■■□ 3.54
SYNE2-201ENST00000341472 TOP2AP11388 1531 aaKnown RBP37.16■■■■□ 3.54
SYNE2-201ENST00000341472 THOC2Q8NI27 1593 aaKnown RBP37.04■■■■□ 3.52
SYNE2-201ENST00000341472 CFTRP13569 1480 aa37.01■■■■□ 3.51
SYNE2-201ENST00000341472 KIF21AQ7Z4S6 1674 aa36.99■■■■□ 3.51
SYNE2-201ENST00000341472 MRC2Q9UBG0 1479 aa36.93■■■■□ 3.5
SYNE2-201ENST00000341472 FANCD2Q9BXW9 1451 aa36.91■■■■□ 3.5
SYNE2-201ENST00000341472 CEP164Q9UPV0 1460 aa36.88■■■■□ 3.49
SYNE2-201ENST00000341472 CCDC88BA6NC98 1476 aa36.86■■■■□ 3.49
SYNE2-201ENST00000341472 WDR62O43379 1518 aa36.75■■■■□ 3.47
SYNE2-201ENST00000341472 URB2Q14146 1524 aaKnown RBP36.53■■■■□ 3.44
SYNE2-201ENST00000341472 SUPT5HO00267 1087 aaKnown RBP36.41■■■■□ 3.42
SYNE2-201ENST00000341472 PRDM2Q13029 1718 aa36.28■■■■□ 3.4
SYNE2-201ENST00000341472 ABCC8Q09428 1581 aa36.24■■■■□ 3.39
SYNE2-201ENST00000341472 TOPBP1Q92547 1522 aa36.23■■■■□ 3.39
SYNE2-201ENST00000341472 IFT140Q96RY7 1462 aa36.16■■■■□ 3.38
SYNE2-201ENST00000341472 OSCARQ8IYS5 282 aa36.1■■■■□ 3.37
SYNE2-201ENST00000341472 DNMBPQ6XZF7 1577 aa36.06■■■■□ 3.36
SYNE2-201ENST00000341472 ZNF608Q9ULD9 1512 aaPredicted RBP36.03■■■■□ 3.36
SYNE2-201ENST00000341472 POLA1P09884 1462 aaPredicted RBP35.89■■■■□ 3.34
SYNE2-201ENST00000341472 SOGA1O94964 1423 aa35.87■■■■□ 3.33
SYNE2-201ENST00000341472 AQRO60306 1485 aaKnown RBP eCLIP35.85■■■■□ 3.33
SYNE2-201ENST00000341472 RAD54L2Q9Y4B4 1467 aa35.8■■■■□ 3.32
SYNE2-201ENST00000341472 TARBP1Q13395 1621 aaKnown RBP35.76■■■■□ 3.32
SYNE2-201ENST00000341472 TDRD9Q8NDG6 1382 aaKnown RBP35.75■■■■□ 3.31
SYNE2-201ENST00000341472 CUX1P39880 1505 aa35.74■■■■□ 3.31
SYNE2-201ENST00000341472 TRIM41Q8WV44 630 aa35.74■■■■□ 3.31
SYNE2-201ENST00000341472 FGD5Q6ZNL6 1462 aa35.73■■■■□ 3.31
SYNE2-201ENST00000341472 EIF4G3O43432 1585 aaKnown RBP35.69■■■■□ 3.3
SYNE2-201ENST00000341472 FBLN2P98095 1184 aa35.66■■■■□ 3.3
SYNE2-201ENST00000341472 CHMP7Q8WUX9 453 aaPredicted RBP35.46■■■■□ 3.27
SYNE2-201ENST00000341472 GRIN2BQ13224 1484 aa35.42■■■■□ 3.26
SYNE2-201ENST00000341472 WDR97A6NE52 1622 aa35.42■■■■□ 3.26
SYNE2-201ENST00000341472 WRNQ14191 1432 aaPredicted RBP eCLIP35.41■■■■□ 3.26
SYNE2-201ENST00000341472 SNAPC4Q5SXM2 1469 aa35.41■■■■□ 3.26
SYNE2-201ENST00000341472 GAPVD1Q14C86 1478 aa35.36■■■■□ 3.25
SYNE2-201ENST00000341472 ABCA10Q8WWZ4 1543 aa35.36■■■■□ 3.25
SYNE2-201ENST00000341472 MAGI1Q96QZ7 1491 aaPredicted RBP35.33■■■■□ 3.25
SYNE2-201ENST00000341472 ARHGEF11O15085 1522 aa35.27■■■■□ 3.24
SYNE2-201ENST00000341472 CHD1O14646 1710 aa35.26■■■■□ 3.24
SYNE2-201ENST00000341472 RIMBP3CA6NJZ7 1639 aa35.24■■■■□ 3.23
SYNE2-201ENST00000341472 RIMBP3BA6NNM3 1639 aa35.24■■■■□ 3.23
SYNE2-201ENST00000341472 TOP2BQ02880 1626 aa35.24■■■■□ 3.23
SYNE2-201ENST00000341472 RIMBP3Q9UFD9 1639 aa35.24■■■■□ 3.23
SYNE2-201ENST00000341472 CYB5RLQ6IPT4 315 aa35.23■■■■□ 3.23
SYNE2-201ENST00000341472 SYNJ2O15056 1496 aa35.22■■■■□ 3.23
SYNE2-201ENST00000341472 SYNJ1O43426 1573 aa35.2■■■■□ 3.23
SYNE2-201ENST00000341472 BIVM-ERCC5R4GMW8 1640 aa35.15■■■■□ 3.22
SYNE2-201ENST00000341472 ABCA5Q8WWZ7 1642 aa35.11■■■■□ 3.21
SYNE2-201ENST00000341472 PBRM1Q86U86 1689 aa35.02■■■■□ 3.2
SYNE2-201ENST00000341472 CLASP1Q7Z460 1538 aa35.01■■■■□ 3.19
SYNE2-201ENST00000341472 FHAD1B1AJZ9 1412 aa34.96■■■■□ 3.19
SYNE2-201ENST00000341472 ARAP1Q96P48 1450 aa34.96■■■■□ 3.19
SYNE2-201ENST00000341472 GRIN2AQ12879 1464 aa34.92■■■■□ 3.18
SYNE2-201ENST00000341472 ERICH3Q5RHP9 1530 aa34.89■■■■□ 3.18
SYNE2-201ENST00000341472 ADAMTS12P58397 1594 aa34.84■■■■□ 3.17
SYNE2-201ENST00000341472 NUP160Q12769 1436 aa34.81■■■■□ 3.16
SYNE2-201ENST00000341472 KIF27Q86VH2 1401 aa34.75■■■■□ 3.15
SYNE2-201ENST00000341472 IGF1RP08069 1367 aa34.74■■■■□ 3.15
SYNE2-201ENST00000341472 TRHP20396 242 aaPredicted RBP34.7■■■■□ 3.15
SYNE2-201ENST00000341472 CEP170Q5SW79 1584 aa34.69■■■■□ 3.14
SYNE2-201ENST00000341472 JPH4Q96JJ6 628 aa34.65■■■■□ 3.14
SYNE2-201ENST00000341472 ERCC6L2Q5T890 1561 aa34.53■■■■□ 3.12
SYNE2-201ENST00000341472 PRG4Q92954 1404 aaPredicted RBP34.51■■■■□ 3.12
SYNE2-201ENST00000341472 CARMIL1Q5VZK9 1371 aa34.5■■■■□ 3.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms