Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.462e-8■■□□□ 14.5
DDX55Q8NHQ9 PFDN6-205ENST00000395134 805 ntTSL 210.25□□□□□ -0.772e-8■■□□□ 14.5
DDX55Q8NHQ9 THRAP3-201ENST00000354618 4432 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.353e-11■■□□□ 14.5
DDX55Q8NHQ9 PAXX-207ENST00000493968 958 ntTSL 1 (best)24.38■■□□□ 1.497e-7■■□□□ 14.5
DDX55Q8NHQ9 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC25.76■■□□□ 1.713e-6■■□□□ 14.5
DDX55Q8NHQ9 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.93e-6■■□□□ 14.5
DDX55Q8NHQ9 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC16.47■□□□□ 0.238e-7■■□□□ 14.5
DDX55Q8NHQ9 CHTF8-201ENST00000306585 2561 ntBASIC12.56□□□□□ -0.43e-6■■□□□ 14.5
DDX55Q8NHQ9 SEC24C-203ENST00000465076 4668 ntTSL 1 (best)12.12□□□□□ -0.471e-11■■□□□ 14.5
DDX55Q8NHQ9 SEC24C-201ENST00000339365 4513 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.521e-11■■□□□ 14.5
DDX55Q8NHQ9 SEC24C-202ENST00000345254 4433 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.761e-11■■□□□ 14.5
DDX55Q8NHQ9 PRKCSH-204ENST00000587290 780 ntTSL 219■□□□□ 0.635e-12■■□□□ 14.5
DDX55Q8NHQ9 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.293e-31■■□□□ 14.5
DDX55Q8NHQ9 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.417e-8■■□□□ 14.5
DDX55Q8NHQ9 BTBD2-207ENST00000589685 2422 ntTSL 1 (best)19.84■□□□□ 0.777e-8■■□□□ 14.5
DDX55Q8NHQ9 BTBD2-210ENST00000592895 2763 ntTSL 219.58■□□□□ 0.737e-8■■□□□ 14.5
DDX55Q8NHQ9 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.416e-18■■□□□ 14.5
DDX55Q8NHQ9 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.15■□□□□ 0.982e-17■■□□□ 14.5
DDX55Q8NHQ9 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.32■□□□□ 0.842e-17■■□□□ 14.5
DDX55Q8NHQ9 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC17.94■□□□□ 0.462e-17■■□□□ 14.5
DDX55Q8NHQ9 PRMT5-202ENST00000324366 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.142e-17■■□□□ 14.5
DDX55Q8NHQ9 PRMT5-218ENST00000555454 771 ntTSL 59.9□□□□□ -0.822e-17■■□□□ 14.5
DDX55Q8NHQ9 PRMT5-207ENST00000476175 682 ntTSL 28.43□□□□□ -1.062e-17■■□□□ 14.5
DDX55Q8NHQ9 PRMT5-206ENST00000454731 617 ntTSL 37.97□□□□□ -1.132e-17■■□□□ 14.5
DDX55Q8NHQ9 PRMT5-226ENST00000557443 337 ntTSL 36.37□□□□□ -1.392e-17■■□□□ 14.5
DDX55Q8NHQ9 CENPX-211ENST00000585091 739 ntTSL 324.92■■□□□ 1.586e-9■■□□□ 14.5
DDX55Q8NHQ9 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC23.95■■□□□ 1.426e-9■■□□□ 14.5
DDX55Q8NHQ9 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.386e-9■■□□□ 14.5
DDX55Q8NHQ9 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.293e-13■■□□□ 14.5
DDX55Q8NHQ9 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.116e-9■■□□□ 14.5
DDX55Q8NHQ9 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.566e-9■■□□□ 14.5
DDX55Q8NHQ9 PLEC-202ENST00000345136 14803 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.236e-9■■□□□ 14.5
DDX55Q8NHQ9 PLEC-208ENST00000436759 14787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.236e-9■■□□□ 14.5
DDX55Q8NHQ9 PLEC-201ENST00000322810 15249 ntAPPRIS P4 TSL 1 (best) BASIC12.94□□□□□ -0.346e-9■■□□□ 14.5
DDX55Q8NHQ9 PLEC-204ENST00000354958 14751 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.416e-9■■□□□ 14.5
DDX55Q8NHQ9 PLEC-203ENST00000354589 14736 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.446e-9■■□□□ 14.5
DDX55Q8NHQ9 PLEC-206ENST00000357649 14689 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.456e-9■■□□□ 14.5
DDX55Q8NHQ9 PLEC-205ENST00000356346 14683 ntTSL 1 (best) BASIC12.17□□□□□ -0.466e-9■■□□□ 14.5
DDX55Q8NHQ9 PLEC-207ENST00000398774 14646 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.586e-9■■□□□ 14.5
DDX55Q8NHQ9 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC28.72■■■□□ 2.198e-7■■□□□ 14.4
DDX55Q8NHQ9 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC27.39■■□□□ 1.988e-7■■□□□ 14.4
DDX55Q8NHQ9 CLK2-205ENST00000476983 1885 ntTSL 1 (best)22.88■■□□□ 1.258e-7■■□□□ 14.4
DDX55Q8NHQ9 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 18e-7■■□□□ 14.4
DDX55Q8NHQ9 CLK2-207ENST00000497188 2702 ntTSL 213.4□□□□□ -0.268e-7■■□□□ 14.4
DDX55Q8NHQ9 TMEM59L-204ENST00000598660 1683 ntTSL 525.8■■□□□ 1.729e-9■■□□□ 14.4
DDX55Q8NHQ9 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.899e-9■■□□□ 14.4
DDX55Q8NHQ9 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.819e-9■■□□□ 14.4
DDX55Q8NHQ9 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC37.97■■■■□ 3.671e-9■■□□□ 14.4
DDX55Q8NHQ9 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.993e-6■■□□□ 14.4
DDX55Q8NHQ9 ABCA2-217ENST00000479446 6295 ntTSL 1 (best)21.56■■□□□ 1.042e-15■■□□□ 14.4
DDX55Q8NHQ9 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.61e-6■■□□□ 14.4
DDX55Q8NHQ9 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.341e-6■■□□□ 14.4
DDX55Q8NHQ9 ARHGEF10L-209ENST00000495593 2261 ntTSL 216.71■□□□□ 0.272e-9■■□□□ 14.4
DDX55Q8NHQ9 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.062e-15■■□□□ 14.4
DDX55Q8NHQ9 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.052e-15■■□□□ 14.4
DDX55Q8NHQ9 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC15.19■□□□□ 0.021e-6■■□□□ 14.4
DDX55Q8NHQ9 ARHGEF10L-201ENST00000167825 3018 ntTSL 214.6□□□□□ -0.072e-9■■□□□ 14.4
DDX55Q8NHQ9 NR4A1-201ENST00000243050 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.071e-6■■□□□ 14.4
DDX55Q8NHQ9 ABCA2-202ENST00000341511 8063 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.122e-15■■□□□ 14.4
DDX55Q8NHQ9 ARHGEF10L-202ENST00000361221 4488 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.142e-9■■□□□ 14.4
DDX55Q8NHQ9 ARHGEF10L-206ENST00000469726 4585 ntTSL 213.81□□□□□ -0.22e-9■■□□□ 14.4
DDX55Q8NHQ9 ABCA2-218ENST00000487109 8031 ntTSL 1 (best)13.79□□□□□ -0.22e-15■■□□□ 14.4
DDX55Q8NHQ9 ABCA2-223ENST00000614293 8146 ntTSL 5 BASIC13.48□□□□□ -0.252e-15■■□□□ 14.4
DDX55Q8NHQ9 ABCA2-208ENST00000459850 8073 ntTSL 1 (best)13.36□□□□□ -0.272e-15■■□□□ 14.4
DDX55Q8NHQ9 ARHGEF10L-203ENST00000375408 3685 ntTSL 5 BASIC12.93□□□□□ -0.342e-9■■□□□ 14.4
DDX55Q8NHQ9 NR4A1-215ENST00000550557 4837 ntTSL 1 (best)12.89□□□□□ -0.351e-6■■□□□ 14.4
DDX55Q8NHQ9 NR4A1-206ENST00000545748 3511 ntTSL 2 BASIC12.02□□□□□ -0.491e-6■■□□□ 14.4
DDX55Q8NHQ9 ARHGEF10L-204ENST00000375415 4035 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.562e-9■■□□□ 14.4
DDX55Q8NHQ9 GPX4-204ENST00000587648 536 ntTSL 210.81□□□□□ -0.689e-24■■□□□ 14.4
DDX55Q8NHQ9 AHNAK-208ENST00000533365 584 ntAPPRIS ALT2 TSL 523.13■■□□□ 1.294e-12■■□□□ 14.4
DDX55Q8NHQ9 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.494e-12■■□□□ 14.4
DDX55Q8NHQ9 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC17.61■□□□□ 0.414e-12■■□□□ 14.4
DDX55Q8NHQ9 AHNAK-203ENST00000525875 793 ntTSL 312.87□□□□□ -0.354e-12■■□□□ 14.4
DDX55Q8NHQ9 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.43□□□□□ -1.544e-12■■□□□ 14.4
DDX55Q8NHQ9 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.461e-7■■□□□ 14.4
DDX55Q8NHQ9 NEDD8-207ENST00000533242 2300 ntTSL 1 (best)10.2□□□□□ -0.782e-13■■□□□ 14.4
DDX55Q8NHQ9 MORF4L2-203ENST00000422154 1983 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.746e-42■■□□□ 14.4
DDX55Q8NHQ9 MORF4L2-201ENST00000360458 1824 ntAPPRIS P1 TSL 2 BASIC9.56□□□□□ -0.886e-42■■□□□ 14.4
DDX55Q8NHQ9 MORF4L2-210ENST00000451301 1830 ntAPPRIS P1 TSL 2 BASIC9.03□□□□□ -0.966e-42■■□□□ 14.4
DDX55Q8NHQ9 MORF4L2-208ENST00000441076 1828 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -16e-42■■□□□ 14.4
DDX55Q8NHQ9 MORF4L2-206ENST00000433176 1965 ntAPPRIS P1 TSL 2 BASIC8.45□□□□□ -1.066e-42■■□□□ 14.4
DDX55Q8NHQ9 EGFL7-206ENST00000492002 654 ntTSL 529.11■■■□□ 2.251e-9■■□□□ 14.4
DDX55Q8NHQ9 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.461e-85■■□□□ 14.4
DDX55Q8NHQ9 CALR-203ENST00000586803 667 ntTSL 216.3■□□□□ 0.21e-85■■□□□ 14.4
DDX55Q8NHQ9 CALR-202ENST00000586760 913 ntTSL 214.8□□□□□ -0.041e-85■■□□□ 14.4
DDX55Q8NHQ9 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC15.58■□□□□ 0.083e-7■■□□□ 14.4
DDX55Q8NHQ9 SGK1-204ENST00000367858 3201 ntTSL 1 (best) BASIC11.93□□□□□ -0.53e-7■■□□□ 14.4
DDX55Q8NHQ9 SGK1-202ENST00000367855 2422 ntTSL 510.95□□□□□ -0.663e-7■■□□□ 14.4
DDX55Q8NHQ9 SGK1-203ENST00000367857 2414 ntTSL 1 (best) BASIC10.44□□□□□ -0.743e-7■■□□□ 14.4
DDX55Q8NHQ9 SGK1-213ENST00000477460 1896 ntTSL 210.39□□□□□ -0.753e-7■■□□□ 14.4
DDX55Q8NHQ9 SGK1-201ENST00000237305 2401 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.883e-7■■□□□ 14.4
DDX55Q8NHQ9 SGK1-210ENST00000474427 5474 ntTSL 25.34□□□□□ -1.563e-7■■□□□ 14.4
DDX55Q8NHQ9 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC22.91■■□□□ 1.262e-24■■□□□ 14.4
DDX55Q8NHQ9 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.082e-24■■□□□ 14.4
DDX55Q8NHQ9 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.052e-24■■□□□ 14.4
DDX55Q8NHQ9 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.012e-24■■□□□ 14.4
DDX55Q8NHQ9 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 12e-24■■□□□ 14.4
DDX55Q8NHQ9 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.42e-8■■□□□ 14.4
DDX55Q8NHQ9 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC15.24■□□□□ 0.032e-8■■□□□ 14.4
DDX55Q8NHQ9 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC16.01■□□□□ 0.152e-6■■□□□ 14.4
Retrieved 100 of 15,504 protein–RNA pairs in 111.5 ms