RNA–Protein interactions for RNA: ENST00000587290.5

PRKCSH-204, Transcript of protein kinase C substrate 80K-H, humanhuman

TSL 2

Gene PRKCSH, Length 780 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCSH-204ENST00000587290 NISCHQ9Y2I1 1504 aa38.18■■■■□ 3.7
PRKCSH-204ENST00000587290 ABCC9O60706 1549 aa34.27■■■■□ 3.08
PRKCSH-204ENST00000587290 CCDC180Q9P1Z9 1646 aa34.25■■■■□ 3.07
PRKCSH-204ENST00000587290 RB1CC1Q8TDY2 1594 aa32.55■■■□□ 2.8
PRKCSH-204ENST00000587290 NACADO15069 1562 aa32.32■■■□□ 2.76
PRKCSH-204ENST00000587290 DCAF8L2P0C7V8 631 aa32.22■■■□□ 2.75
PRKCSH-204ENST00000587290 DNAJC5BQ9UF47 199 aa32.09■■■□□ 2.73
PRKCSH-204ENST00000587290 UNC13AQ9UPW8 1703 aa32■■■□□ 2.71
PRKCSH-204ENST00000587290 PABPN1Q86U42 306 aaKnown RBP eCLIP31.9■■■□□ 2.7
PRKCSH-204ENST00000587290 MYO15BQ96JP2 1530 aa31.8■■■□□ 2.68
PRKCSH-204ENST00000587290 BICRAQ9NZM4 1560 aa31.69■■■□□ 2.66
PRKCSH-204ENST00000587290 ZCCHC6Q5VYS8 1495 aaKnown RBP31.67■■■□□ 2.66
PRKCSH-204ENST00000587290 DCAF1Q9Y4B6 1507 aa31.45■■■□□ 2.63
PRKCSH-204ENST00000587290 SCRIBQ14160 1630 aa31.32■■■□□ 2.6
PRKCSH-204ENST00000587290 SHROOM4Q9ULL8 1493 aa31.08■■■□□ 2.57
PRKCSH-204ENST00000587290 CC2D2AQ9P2K1 1620 aa30.95■■■□□ 2.55
PRKCSH-204ENST00000587290 EIF4G1Q04637 1599 aaKnown RBP30.88■■■□□ 2.53
PRKCSH-204ENST00000587290 CECR2Q9BXF3 1484 aa30.81■■■□□ 2.52
PRKCSH-204ENST00000587290 SMARCA4P51532 1647 aa29.82■■■□□ 2.36
PRKCSH-204ENST00000587290 NCAPD3P42695 1498 aa29.8■■■□□ 2.36
PRKCSH-204ENST00000587290 ATAD2BQ9ULI0 1458 aa29.78■■■□□ 2.36
PRKCSH-204ENST00000587290 SMARCA2P51531 1590 aa29.68■■■□□ 2.34
PRKCSH-204ENST00000587290 HMGXB3Q12766 1538 aa29.64■■■□□ 2.34
PRKCSH-204ENST00000587290 BAZ1AQ9NRL2 1556 aaPredicted RBP29.61■■■□□ 2.33
PRKCSH-204ENST00000587290 ERCC6Q03468 1493 aa29.53■■■□□ 2.32
PRKCSH-204ENST00000587290 BAZ1BQ9UIG0 1483 aaKnown RBP29.51■■■□□ 2.31
PRKCSH-204ENST00000587290 NESP48681 1621 aa29.49■■■□□ 2.31
PRKCSH-204ENST00000587290 MROH2BQ7Z745 1585 aa29.48■■■□□ 2.31
PRKCSH-204ENST00000587290 PEG3Q9GZU2 1588 aa29.46■■■□□ 2.31
PRKCSH-204ENST00000587290 CUX2O14529 1486 aa29.4■■■□□ 2.3
PRKCSH-204ENST00000587290 DNAJC5Q9H3Z4 198 aa29.31■■■□□ 2.28
PRKCSH-204ENST00000587290 WIZO95785 1651 aa29.18■■■□□ 2.26
PRKCSH-204ENST00000587290 LAMC3Q9Y6N6 1575 aa29.18■■■□□ 2.26
PRKCSH-204ENST00000587290 THOC2Q8NI27 1593 aaKnown RBP29.16■■■□□ 2.26
PRKCSH-204ENST00000587290 KIF21AQ7Z4S6 1674 aa29.15■■■□□ 2.26
PRKCSH-204ENST00000587290 PDS5BQ9NTI5 1447 aa28.94■■■□□ 2.22
PRKCSH-204ENST00000587290 CADPSQ9ULU8 1353 aa28.91■■■□□ 2.22
PRKCSH-204ENST00000587290 RSF1Q96T23 1441 aaPredicted RBP28.83■■■□□ 2.21
PRKCSH-204ENST00000587290 MRC2Q9UBG0 1479 aa28.77■■■□□ 2.2
PRKCSH-204ENST00000587290 TOP2AP11388 1531 aaKnown RBP28.73■■■□□ 2.19
PRKCSH-204ENST00000587290 WDR62O43379 1518 aa28.71■■■□□ 2.19
PRKCSH-204ENST00000587290 CEP164Q9UPV0 1460 aa28.67■■■□□ 2.18
PRKCSH-204ENST00000587290 FANCD2Q9BXW9 1451 aa28.65■■■□□ 2.18
PRKCSH-204ENST00000587290 CFTRP13569 1480 aa28.62■■■□□ 2.17
PRKCSH-204ENST00000587290 PRDM2Q13029 1718 aa28.46■■■□□ 2.15
PRKCSH-204ENST00000587290 URB2Q14146 1524 aaKnown RBP28.45■■■□□ 2.15
PRKCSH-204ENST00000587290 CCDC88BA6NC98 1476 aa28.4■■■□□ 2.14
PRKCSH-204ENST00000587290 TRIM41Q8WV44 630 aa28.16■■■□□ 2.1
PRKCSH-204ENST00000587290 TOPBP1Q92547 1522 aa28.13■■■□□ 2.09
PRKCSH-204ENST00000587290 ZNF608Q9ULD9 1512 aaPredicted RBP28.11■■■□□ 2.09
PRKCSH-204ENST00000587290 IFT140Q96RY7 1462 aa28.05■■■□□ 2.08
PRKCSH-204ENST00000587290 DNMBPQ6XZF7 1577 aa28.03■■■□□ 2.08
PRKCSH-204ENST00000587290 OSCARQ8IYS5 282 aa28.02■■■□□ 2.08
PRKCSH-204ENST00000587290 EIF4G3O43432 1585 aaKnown RBP27.98■■■□□ 2.07
PRKCSH-204ENST00000587290 ABCC8Q09428 1581 aa27.94■■■□□ 2.06
PRKCSH-204ENST00000587290 TARBP1Q13395 1621 aaKnown RBP27.9■■■□□ 2.06
PRKCSH-204ENST00000587290 POLA1P09884 1462 aaPredicted RBP27.85■■■□□ 2.05
PRKCSH-204ENST00000587290 AQRO60306 1485 aaKnown RBP eCLIP27.83■■■□□ 2.047e-7■■■□□ 15.6
PRKCSH-204ENST00000587290 RIMBP3CA6NJZ7 1639 aa27.82■■■□□ 2.04
PRKCSH-204ENST00000587290 RIMBP3BA6NNM3 1639 aa27.82■■■□□ 2.04
PRKCSH-204ENST00000587290 RIMBP3Q9UFD9 1639 aa27.82■■■□□ 2.04
PRKCSH-204ENST00000587290 CHD1O14646 1710 aa27.81■■■□□ 2.04
PRKCSH-204ENST00000587290 RAD54L2Q9Y4B4 1467 aa27.78■■■□□ 2.04
PRKCSH-204ENST00000587290 ARHGEF11O15085 1522 aa27.7■■■□□ 2.02
PRKCSH-204ENST00000587290 CUX1P39880 1505 aa27.7■■■□□ 2.02
PRKCSH-204ENST00000587290 FGD5Q6ZNL6 1462 aa27.7■■■□□ 2.02
PRKCSH-204ENST00000587290 SOGA1O94964 1423 aa27.67■■■□□ 2.02
PRKCSH-204ENST00000587290 TDRD9Q8NDG6 1382 aaKnown RBP27.65■■■□□ 2.02
PRKCSH-204ENST00000587290 SUPT5HO00267 1087 aaKnown RBP27.64■■■□□ 2.02
PRKCSH-204ENST00000587290 FBLN2P98095 1184 aa27.61■■■□□ 2.01
PRKCSH-204ENST00000587290 SNAPC4Q5SXM2 1469 aa27.56■■■□□ 2
PRKCSH-204ENST00000587290 WDR97A6NE52 1622 aa27.55■■■□□ 2
PRKCSH-204ENST00000587290 PBRM1Q86U86 1689 aa27.46■■□□□ 1.99
PRKCSH-204ENST00000587290 CYB5RLQ6IPT4 315 aa27.45■■□□□ 1.98
PRKCSH-204ENST00000587290 ARAP1Q96P48 1450 aa27.44■■□□□ 1.98
PRKCSH-204ENST00000587290 GRIN2BQ13224 1484 aa27.43■■□□□ 1.98
PRKCSH-204ENST00000587290 MAGI1Q96QZ7 1491 aaPredicted RBP27.41■■□□□ 1.98
PRKCSH-204ENST00000587290 CLASP1Q7Z460 1538 aa27.39■■□□□ 1.98
PRKCSH-204ENST00000587290 CHMP7Q8WUX9 453 aaPredicted RBP27.36■■□□□ 1.97
PRKCSH-204ENST00000587290 ABCA5Q8WWZ7 1642 aa27.35■■□□□ 1.97
PRKCSH-204ENST00000587290 GAPVD1Q14C86 1478 aa27.35■■□□□ 1.97
PRKCSH-204ENST00000587290 SYNJ1O43426 1573 aa27.35■■□□□ 1.97
PRKCSH-204ENST00000587290 SYNJ2O15056 1496 aa27.33■■□□□ 1.97
PRKCSH-204ENST00000587290 ABCA10Q8WWZ4 1543 aa27.32■■□□□ 1.96
PRKCSH-204ENST00000587290 BIVM-ERCC5R4GMW8 1640 aa27.26■■□□□ 1.95
PRKCSH-204ENST00000587290 TOP2BQ02880 1626 aa27.23■■□□□ 1.95
PRKCSH-204ENST00000587290 WRNQ14191 1432 aaPredicted RBP eCLIP27.19■■□□□ 1.94
PRKCSH-204ENST00000587290 ADAMTS12P58397 1594 aa27.14■■□□□ 1.94
PRKCSH-204ENST00000587290 TRHP20396 242 aaPredicted RBP27.13■■□□□ 1.93
PRKCSH-204ENST00000587290 GRIN2AQ12879 1464 aa27.11■■□□□ 1.93
PRKCSH-204ENST00000587290 CEP170Q5SW79 1584 aa27.07■■□□□ 1.92
PRKCSH-204ENST00000587290 ERCC6L2Q5T890 1561 aa27.06■■□□□ 1.92
PRKCSH-204ENST00000587290 NUP160Q12769 1436 aa26.99■■□□□ 1.91
PRKCSH-204ENST00000587290 FHAD1B1AJZ9 1412 aa26.98■■□□□ 1.91
PRKCSH-204ENST00000587290 ERICH3Q5RHP9 1530 aa26.97■■□□□ 1.91
PRKCSH-204ENST00000587290 SHROOM2Q13796 1616 aa26.91■■□□□ 1.9
PRKCSH-204ENST00000587290 RUSC2Q8N2Y8 1516 aa26.78■■□□□ 1.88
PRKCSH-204ENST00000587290 PRG4Q92954 1404 aaPredicted RBP26.73■■□□□ 1.87
PRKCSH-204ENST00000587290 JPH4Q96JJ6 628 aa26.67■■□□□ 1.86
PRKCSH-204ENST00000587290 KIF27Q86VH2 1401 aa26.64■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms