RNA–Protein interactions for RNA: ENST00000550557.1

NR4A1-215, Transcript of nuclear receptor subfamily 4 group A member 1, humanhuman

TSL 1 (best)

Gene NR4A1, Length 4,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR4A1-215ENST00000550557 NISCHQ9Y2I1 1504 aa22.48■■□□□ 1.19
NR4A1-215ENST00000550557 DCAF8L2P0C7V8 631 aa22.47■■□□□ 1.19
NR4A1-215ENST00000550557 SUPT5HO00267 1087 aaKnown RBP20.55■□□□□ 0.88
NR4A1-215ENST00000550557 SHROOM4Q9ULL8 1493 aa20.48■□□□□ 0.87
NR4A1-215ENST00000550557 EHMT2Q96KQ7 1210 aa19.77■□□□□ 0.76
NR4A1-215ENST00000550557 FAM9AQ8IZU1 332 aaPredicted RBP19.71■□□□□ 0.75
NR4A1-215ENST00000550557 APLP2Q06481 763 aa19.45■□□□□ 0.7
NR4A1-215ENST00000550557 ABCC9O60706 1549 aa19.43■□□□□ 0.7
NR4A1-215ENST00000550557 RANGAP1P46060 587 aaPredicted RBP19.21■□□□□ 0.67
NR4A1-215ENST00000550557 PABPN1Q86U42 306 aaKnown RBP eCLIP19.17■□□□□ 0.66
NR4A1-215ENST00000550557 ATP1B4Q9UN42 357 aaPredicted RBP19.13■□□□□ 0.65
NR4A1-215ENST00000550557 TRIM41Q8WV44 630 aa19.12■□□□□ 0.65
NR4A1-215ENST00000550557 UBTFP17480 764 aaKnown RBP18.95■□□□□ 0.62
NR4A1-215ENST00000550557 TTBK1Q5TCY1 1321 aaPredicted RBP18.94■□□□□ 0.62
NR4A1-215ENST00000550557 CCDC180Q9P1Z9 1646 aa18.85■□□□□ 0.61
NR4A1-215ENST00000550557 ZCCHC6Q5VYS8 1495 aaKnown RBP18.82■□□□□ 0.6
NR4A1-215ENST00000550557 PCGF6Q9BYE7 350 aa18.73■□□□□ 0.59
NR4A1-215ENST00000550557 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.71■□□□□ 0.59
NR4A1-215ENST00000550557 HNRNPUL2Q1KMD3 747 aaKnown RBP18.71■□□□□ 0.59
NR4A1-215ENST00000550557 CHIC1Q5VXU3 224 aa18.69■□□□□ 0.58
NR4A1-215ENST00000550557 MYT1LQ9UL68 1186 aa18.67■□□□□ 0.58
NR4A1-215ENST00000550557 PELP1Q8IZL8 1130 aaKnown RBP18.47■□□□□ 0.55
NR4A1-215ENST00000550557 FBLN2P98095 1184 aa18.45■□□□□ 0.54
NR4A1-215ENST00000550557 HRCP23327 699 aa18.39■□□□□ 0.53
NR4A1-215ENST00000550557 ZEB1P37275 1124 aaPredicted RBP18.3■□□□□ 0.52
NR4A1-215ENST00000550557 LOC105371045A0A1W2PR82 267 aa18.29■□□□□ 0.52
NR4A1-215ENST00000550557 SCRIBQ14160 1630 aa18.22■□□□□ 0.51
NR4A1-215ENST00000550557 TRIM26Q12899 539 aaPredicted RBP18.19■□□□□ 0.5
NR4A1-215ENST00000550557 ITGAEP38570 1179 aa18.18■□□□□ 0.5
NR4A1-215ENST00000550557 PPARGC1BQ86YN6 1023 aaKnown RBP18.18■□□□□ 0.5
NR4A1-215ENST00000550557 DCAF1Q9Y4B6 1507 aa18.17■□□□□ 0.5
NR4A1-215ENST00000550557 CCER1Q8TC90 406 aaPredicted RBP18.16■□□□□ 0.5
NR4A1-215ENST00000550557 RB1CC1Q8TDY2 1594 aa18.04■□□□□ 0.48
NR4A1-215ENST00000550557 NPM1P06748 294 aaKnown RBP eCLIP17.9■□□□□ 0.46
NR4A1-215ENST00000550557 CENPBP07199 599 aaPredicted RBP17.89■□□□□ 0.45
NR4A1-215ENST00000550557 NACADO15069 1562 aa17.88■□□□□ 0.45
NR4A1-215ENST00000550557 RSF1Q96T23 1441 aaPredicted RBP17.85■□□□□ 0.45
NR4A1-215ENST00000550557 ARID3CA6NKF2 412 aa17.84■□□□□ 0.45
NR4A1-215ENST00000550557 FAM50AQ14320 339 aaKnown RBP17.83■□□□□ 0.44
NR4A1-215ENST00000550557 P3H3Q8IVL6 736 aa17.81■□□□□ 0.44
NR4A1-215ENST00000550557 POLR3GLQ9BT43 218 aa17.81■□□□□ 0.44
NR4A1-215ENST00000550557 MYO15BQ96JP2 1530 aa17.79■□□□□ 0.44
NR4A1-215ENST00000550557 CHMP7Q8WUX9 453 aaPredicted RBP17.73■□□□□ 0.43
NR4A1-215ENST00000550557 TRIM52Q96A61 297 aa17.72■□□□□ 0.43
NR4A1-215ENST00000550557 SLC4A1APQ9BWU0 796 aaKnown RBP17.72■□□□□ 0.43
NR4A1-215ENST00000550557 ESF1Q9H501 851 aaKnown RBP17.71■□□□□ 0.43
NR4A1-215ENST00000550557 CDK11AQ9UQ88 783 aaPredicted RBP17.71■□□□□ 0.43
NR4A1-215ENST00000550557 CSRNP3Q8WYN3 585 aa17.69■□□□□ 0.42
NR4A1-215ENST00000550557 ZNF777Q9ULD5 760 aaPredicted RBP17.64■□□□□ 0.41
NR4A1-215ENST00000550557 BCANQ96GW7 911 aa17.63■□□□□ 0.41
NR4A1-215ENST00000550557 ERCC6Q03468 1493 aa17.62■□□□□ 0.41
NR4A1-215ENST00000550557 MYT1Q01538 1121 aa17.61■□□□□ 0.41
NR4A1-215ENST00000550557 PLPPR3Q6T4P5 718 aa17.58■□□□□ 0.4
NR4A1-215ENST00000550557 CNGB1Q14028 1251 aaPredicted RBP17.53■□□□□ 0.4
NR4A1-215ENST00000550557 CECR2Q9BXF3 1484 aa17.53■□□□□ 0.4
NR4A1-215ENST00000550557 BAZ1BQ9UIG0 1483 aaKnown RBP17.52■□□□□ 0.39
NR4A1-215ENST00000550557 YTHDC1Q96MU7 727 aaKnown RBP17.5■□□□□ 0.39
NR4A1-215ENST00000550557 BAZ1AQ9NRL2 1556 aaPredicted RBP17.5■□□□□ 0.39
NR4A1-215ENST00000550557 ERICH6Q7L0X2 663 aa17.49■□□□□ 0.39
NR4A1-215ENST00000550557 ZNF326Q5BKZ1 582 aaKnown RBP17.43■□□□□ 0.38
NR4A1-215ENST00000550557 STAG3Q9UJ98 1225 aa17.42■□□□□ 0.38
NR4A1-215ENST00000550557 MROH2BQ7Z745 1585 aa17.4■□□□□ 0.38
NR4A1-215ENST00000550557 NEUROD1Q13562 356 aa17.36■□□□□ 0.37
NR4A1-215ENST00000550557 DIEXFQ68CQ4 756 aaKnown RBP17.35■□□□□ 0.37
NR4A1-215ENST00000550557 NEFLP07196 543 aa17.33■□□□□ 0.36
NR4A1-215ENST00000550557 CHGAP10645 457 aaKnown RBP17.33■□□□□ 0.36
NR4A1-215ENST00000550557 KCNH8Q96L42 1107 aa17.32■□□□□ 0.36
NR4A1-215ENST00000550557 TRHP20396 242 aaPredicted RBP17.31■□□□□ 0.36
NR4A1-215ENST00000550557 EEA1Q15075 1411 aa17.3■□□□□ 0.36
NR4A1-215ENST00000550557 TSPY4P0CV99 314 aa17.24■□□□□ 0.35
NR4A1-215ENST00000550557 TSPY10P0CW01 314 aa17.24■□□□□ 0.35
NR4A1-215ENST00000550557 WRNQ14191 1432 aaPredicted RBP eCLIP17.21■□□□□ 0.35
NR4A1-215ENST00000550557 PLEKHD1A6NEE1 506 aa17.21■□□□□ 0.35
NR4A1-215ENST00000550557 WIZO95785 1651 aa17.2■□□□□ 0.34
NR4A1-215ENST00000550557 ARID4BQ4LE39 1312 aaPredicted RBP17.19■□□□□ 0.34
NR4A1-215ENST00000550557 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.19■□□□□ 0.34
NR4A1-215ENST00000550557 GOLGA3Q08378 1498 aa17.16■□□□□ 0.34
NR4A1-215ENST00000550557 CEP162Q5TB80 1403 aa17.16■□□□□ 0.34
NR4A1-215ENST00000550557 PDS5BQ9NTI5 1447 aa17.15■□□□□ 0.34
NR4A1-215ENST00000550557 CCDC88BA6NC98 1476 aa17.15■□□□□ 0.34
NR4A1-215ENST00000550557 MTUS2Q5JR59 1369 aa17.14■□□□□ 0.34
NR4A1-215ENST00000550557 TOP2AP11388 1531 aaKnown RBP17.14■□□□□ 0.33
NR4A1-215ENST00000550557 GTF3C3Q9Y5Q9 886 aa17.13■□□□□ 0.33
NR4A1-215ENST00000550557 TNIKQ9UKE5 1360 aa17.13■□□□□ 0.33
NR4A1-215ENST00000550557 CHIC2Q9UKJ5 165 aa17.11■□□□□ 0.33
NR4A1-215ENST00000550557 ACIN1Q9UKV3 1341 aaKnown RBP17.11■□□□□ 0.33
NR4A1-215ENST00000550557 KIF27Q86VH2 1401 aa17.1■□□□□ 0.33
NR4A1-215ENST00000550557 SLC24A1O60721 1099 aa17.09■□□□□ 0.33
NR4A1-215ENST00000550557 CLIP1P30622 1438 aa17.09■□□□□ 0.33
NR4A1-215ENST00000550557 CEP164Q9UPV0 1460 aa17.05■□□□□ 0.32
NR4A1-215ENST00000550557 SMARCA4P51532 1647 aa17.04■□□□□ 0.32
NR4A1-215ENST00000550557 ZNF316A6NFI3 1004 aaPredicted RBP17.04■□□□□ 0.32
NR4A1-215ENST00000550557 ABCC8Q09428 1581 aa17.03■□□□□ 0.32
NR4A1-215ENST00000550557 NEFMP07197 916 aa17.03■□□□□ 0.32
NR4A1-215ENST00000550557 SMARCA2P51531 1590 aa17.02■□□□□ 0.31
NR4A1-215ENST00000550557 SOGA1O94964 1423 aa17.01■□□□□ 0.31
NR4A1-215ENST00000550557 PPP1R15AO75807 674 aaPredicted RBP16.99■□□□□ 0.31
NR4A1-215ENST00000550557 C14orf37Q86TY3 774 aa16.95■□□□□ 0.3
NR4A1-215ENST00000550557 CFDP1Q9UEE9 299 aaPredicted RBP16.94■□□□□ 0.3
NR4A1-215ENST00000550557 SCAF1Q9H7N4 1312 aaKnown RBP16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms