Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.83■□□□□ 0.291e-10■■■□□ 14.8
DDX55Q8NHQ9 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC16.68■□□□□ 0.261e-10■■■□□ 14.8
DDX55Q8NHQ9 COX5A-205ENST00000568517 582 ntTSL 3 BASIC16.67■□□□□ 0.267e-6■■■□□ 14.8
DDX55Q8NHQ9 SFXN4-208ENST00000490417 952 ntTSL 216.57■□□□□ 0.247e-6■■■□□ 14.8
DDX55Q8NHQ9 F11R-204ENST00000537746 1245 ntTSL 2 BASIC16.53■□□□□ 0.247e-6■■■□□ 14.8
DDX55Q8NHQ9 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC16.52■□□□□ 0.247e-6■■■□□ 14.8
DDX55Q8NHQ9 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC16.38■□□□□ 0.213e-8■■■□□ 14.8
DDX55Q8NHQ9 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.213e-8■■■□□ 14.8
DDX55Q8NHQ9 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC16.33■□□□□ 0.21e-10■■■□□ 14.8
DDX55Q8NHQ9 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.27e-6■■■□□ 14.8
DDX55Q8NHQ9 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.172e-6■■■□□ 14.8
DDX55Q8NHQ9 TRIP10-203ENST00000595305 2068 ntTSL 216.01■□□□□ 0.151e-10■■■□□ 14.8
DDX55Q8NHQ9 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.147e-6■■■□□ 14.8
DDX55Q8NHQ9 SLC38A5-210ENST00000595796 2659 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.137e-6■■■□□ 14.8
DDX55Q8NHQ9 AL591806.3-201ENST00000289779 2096 ntAPPRIS P5 TSL 2 BASIC15.8■□□□□ 0.127e-6■■■□□ 14.8
DDX55Q8NHQ9 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.17e-6■■■□□ 14.8
DDX55Q8NHQ9 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC15.59■□□□□ 0.097e-6■■■□□ 14.8
DDX55Q8NHQ9 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC15.59■□□□□ 0.097e-6■■■□□ 14.8
DDX55Q8NHQ9 ARID1A-208ENST00000532781 2583 ntTSL 1 (best)15.49■□□□□ 0.071e-10■■■□□ 14.8
DDX55Q8NHQ9 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.073e-8■■■□□ 14.8
DDX55Q8NHQ9 RHOC-214ENST00000478447 420 ntTSL 215.4■□□□□ 0.061e-6■■■□□ 14.8
DDX55Q8NHQ9 PAM16-207ENST00000573450 579 ntTSL 214.93□□□□□ -0.026e-8■■■□□ 14.8
DDX55Q8NHQ9 RGS12-204ENST00000382788 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.037e-6■■■□□ 14.8
DDX55Q8NHQ9 TCEA3-203ENST00000450454 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.127e-6■■■□□ 14.8
DDX55Q8NHQ9 RTN3-204ENST00000354497 1407 ntTSL 2 BASIC14.25□□□□□ -0.131e-10■■■□□ 14.8
DDX55Q8NHQ9 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC14.2□□□□□ -0.143e-8■■■□□ 14.8
DDX55Q8NHQ9 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC14.15□□□□□ -0.147e-6■■■□□ 14.8
DDX55Q8NHQ9 RGS12-201ENST00000336727 4674 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.157e-6■■■□□ 14.8
DDX55Q8NHQ9 WNK1-202ENST00000340908 11208 ntTSL 5 BASIC14.06□□□□□ -0.167e-6■■■□□ 14.8
DDX55Q8NHQ9 ZFYVE21-209ENST00000555501 4453 ntTSL 1 (best)14.05□□□□□ -0.167e-6■■■□□ 14.8
DDX55Q8NHQ9 WNK1-209ENST00000537687 11232 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.167e-6■■■□□ 14.8
DDX55Q8NHQ9 PI4KB-201ENST00000368872 3331 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.177e-6■■■□□ 14.8
DDX55Q8NHQ9 UNC13D-215ENST00000591563 4382 ntTSL 213.95□□□□□ -0.187e-6■■■□□ 14.8
DDX55Q8NHQ9 C2-212ENST00000482060 2335 ntTSL 213.84□□□□□ -0.198e-11■■■□□ 14.8
DDX55Q8NHQ9 ARID1A-206ENST00000466382 2699 ntTSL 213.62□□□□□ -0.231e-10■■■□□ 14.8
DDX55Q8NHQ9 CANT1-201ENST00000302345 3534 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.267e-6■■■□□ 14.8
DDX55Q8NHQ9 SV2A-202ENST00000369146 4416 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.277e-6■■■□□ 14.8
DDX55Q8NHQ9 SLC20A2-201ENST00000342228 3657 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.271e-10■■■□□ 14.8
DDX55Q8NHQ9 CORO7-PAM16-202ENST00000572467 3284 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.288e-8■■■□□ 14.8
DDX55Q8NHQ9 MYOM3-203ENST00000448831 418 ntTSL 313.23□□□□□ -0.293e-8■■■□□ 14.8
DDX55Q8NHQ9 ANAPC11-205ENST00000571570 581 ntAPPRIS P1 TSL 3 BASIC12.96□□□□□ -0.333e-8■■■□□ 14.8
DDX55Q8NHQ9 DNAJB14-205ENST00000442697 6075 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.367e-6■■■□□ 14.8
DDX55Q8NHQ9 HADHA-204ENST00000492433 752 ntTSL 212.73□□□□□ -0.373e-8■■■□□ 14.8
DDX55Q8NHQ9 RGS12-207ENST00000504194 3522 ntTSL 1 (best)12.67□□□□□ -0.387e-6■■■□□ 14.8
DDX55Q8NHQ9 WNK1-204ENST00000530271 11804 ntTSL 1 (best) BASIC12.56□□□□□ -0.47e-6■■■□□ 14.8
DDX55Q8NHQ9 RTN3-203ENST00000341307 2524 ntTSL 2 BASIC12.49□□□□□ -0.411e-10■■■□□ 14.8
DDX55Q8NHQ9 CANT1-216ENST00000620915 3337 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.467e-6■■■□□ 14.8
DDX55Q8NHQ9 CANT1-202ENST00000392446 3252 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.477e-6■■■□□ 14.8
DDX55Q8NHQ9 ARID1A-204ENST00000430799 6521 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.481e-10■■■□□ 14.8
DDX55Q8NHQ9 RTN3-206ENST00000377819 4937 ntTSL 1 (best) BASIC12.05□□□□□ -0.481e-10■■■□□ 14.8
DDX55Q8NHQ9 ATXN7L3-204ENST00000587022 298 ntTSL 311.94□□□□□ -0.53e-8■■■□□ 14.8
DDX55Q8NHQ9 WNK1-212ENST00000540885 874 ntTSL 1 (best)11.81□□□□□ -0.527e-6■■■□□ 14.8
DDX55Q8NHQ9 RRP1B-202ENST00000470886 4634 ntTSL 211.51□□□□□ -0.572e-6■■■□□ 14.8
DDX55Q8NHQ9 ATXN7L3-209ENST00000590537 539 ntTSL 411.32□□□□□ -0.63e-8■■■□□ 14.8
DDX55Q8NHQ9 HADHA-201ENST00000380649 3037 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.63e-8■■■□□ 14.8
DDX55Q8NHQ9 RTN3-208ENST00000537981 2532 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.611e-10■■■□□ 14.8
DDX55Q8NHQ9 ARID1A-217ENST00000637788 3046 nt10.99□□□□□ -0.651e-10■■■□□ 14.8
DDX55Q8NHQ9 ARHGEF28-206ENST00000504003 539 ntTSL 410.69□□□□□ -0.77e-6■■■□□ 14.8
DDX55Q8NHQ9 ABT1-201ENST00000274849 2949 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.717e-6■■■□□ 14.8
DDX55Q8NHQ9 ADAM9-201ENST00000379917 3836 ntTSL 1 (best)10.44□□□□□ -0.747e-6■■■□□ 14.8
DDX55Q8NHQ9 ADAM9-209ENST00000487273 3839 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.777e-6■■■□□ 14.8
DDX55Q8NHQ9 ADAM9-207ENST00000481873 3793 ntTSL 1 (best)10.18□□□□□ -0.787e-6■■■□□ 14.8
DDX55Q8NHQ9 ARHGEF28-210ENST00000510312 8285 ntTSL 210.05□□□□□ -0.87e-6■■■□□ 14.8
DDX55Q8NHQ9 ATXN7L3-212ENST00000593073 527 ntTSL 49.73□□□□□ -0.853e-8■■■□□ 14.8
DDX55Q8NHQ9 ADAM9-204ENST00000468065 3755 ntTSL 1 (best)9.59□□□□□ -0.877e-6■■■□□ 14.8
DDX55Q8NHQ9 RTN3-202ENST00000339997 4886 ntTSL 1 (best) BASIC9.46□□□□□ -0.891e-10■■■□□ 14.8
DDX55Q8NHQ9 RNA5SP226-201ENST00000362653 115 ntBASIC9.28□□□□□ -0.927e-6■■■□□ 14.8
DDX55Q8NHQ9 ARFRP1-201ENST00000424545 384 ntTSL 28.47□□□□□ -1.057e-6■■■□□ 14.8
DDX55Q8NHQ9 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.127e-6■■■□□ 14.8
DDX55Q8NHQ9 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.127e-6■■■□□ 14.8
DDX55Q8NHQ9 KMT2C-212ENST00000558084 16862 ntTSL 1 (best)8.03□□□□□ -1.127e-6■■■□□ 14.8
DDX55Q8NHQ9 HDDC2-205ENST00000608456 624 ntTSL 36.8□□□□□ -1.327e-6■■■□□ 14.8
DDX55Q8NHQ9 KMT2C-203ENST00000360104 11186 ntTSL 1 (best)6.01□□□□□ -1.457e-6■■■□□ 14.8
DDX55Q8NHQ9 HDDC2-208ENST00000609021 3529 nt5.14□□□□□ -1.597e-6■■■□□ 14.8
DDX55Q8NHQ9 F11R-203ENST00000472573 577 ntTSL 24.68□□□□□ -1.667e-6■■■□□ 14.8
DDX55Q8NHQ9 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.48■■□□□ 1.038e-7■■■□□ 14.8
DDX55Q8NHQ9 COX7A2-208ENST00000509698 480 ntAPPRIS ALT2 TSL 3 BASIC13.21□□□□□ -0.291e-10■■■□□ 14.8
DDX55Q8NHQ9 COX7A2-202ENST00000370089 773 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.611e-10■■■□□ 14.8
DDX55Q8NHQ9 COX7A2-201ENST00000370081 914 ntAPPRIS P2 TSL 3 BASIC10.58□□□□□ -0.721e-10■■■□□ 14.8
DDX55Q8NHQ9 COX7A2-204ENST00000459637 501 ntTSL 24.73□□□□□ -1.651e-10■■■□□ 14.8
DDX55Q8NHQ9 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.68□□□□□ -1.661e-10■■■□□ 14.8
DDX55Q8NHQ9 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC1.02□□□□□ -2.251e-10■■■□□ 14.8
DDX55Q8NHQ9 HSBP1-202ENST00000567382 889 ntTSL 230.02■■■□□ 2.45e-18■■■□□ 14.8
DDX55Q8NHQ9 HSBP1-204ENST00000570259 1020 ntAPPRIS P1 TSL 3 BASIC14.49□□□□□ -0.095e-18■■■□□ 14.8
DDX55Q8NHQ9 HSBP1-201ENST00000433866 8784 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.55e-18■■■□□ 14.8
DDX55Q8NHQ9 HSBP1-203ENST00000569301 551 ntTSL 25.8□□□□□ -1.485e-18■■■□□ 14.8
DDX55Q8NHQ9 TAF15-206ENST00000603967 656 ntTSL 321.14■□□□□ 0.974e-20■■■□□ 14.8
DDX55Q8NHQ9 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC33.58■■■□□ 2.975e-8■■■□□ 14.7
DDX55Q8NHQ9 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.475e-8■■■□□ 14.7
DDX55Q8NHQ9 MCM7-209ENST00000485286 2900 ntTSL 218.87■□□□□ 0.612e-16■■■□□ 14.7
DDX55Q8NHQ9 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.85■□□□□ 0.452e-16■■■□□ 14.7
DDX55Q8NHQ9 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC16.93■□□□□ 0.32e-16■■■□□ 14.7
DDX55Q8NHQ9 MCM7-213ENST00000621318 3084 ntTSL 1 (best) BASIC13.41□□□□□ -0.262e-16■■■□□ 14.7
DDX55Q8NHQ9 MCM7-201ENST00000303887 2957 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.42e-16■■■□□ 14.7
DDX55Q8NHQ9 MCM7-210ENST00000489841 2515 ntTSL 1 (best)10.69□□□□□ -0.72e-16■■■□□ 14.7
DDX55Q8NHQ9 LARP1-201ENST00000336314 6595 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.395e-12■■■□□ 14.7
DDX55Q8NHQ9 ARL10-204ENST00000514533 258 ntTSL 318.29■□□□□ 0.524e-17■■■□□ 14.7
DDX55Q8NHQ9 HIGD2A-201ENST00000274787 668 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.184e-17■■■□□ 14.7
DDX55Q8NHQ9 AES-209ENST00000587393 1082 ntTSL 218.95■□□□□ 0.628e-21■■■□□ 14.7
DDX55Q8NHQ9 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.97e-25■■■□□ 14.7
Retrieved 100 of 15,504 protein–RNA pairs in 122.4 ms