Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 GATD1-206ENST00000526325 756 ntTSL 5 BASIC22.81■■□□□ 1.242e-10■■■■□ 26.4
UPF1Q92900 GATD1-208ENST00000528309 510 ntTSL 321.4■■□□□ 1.022e-10■■■■□ 26.4
UPF1Q92900 GATD1-204ENST00000465313 446 ntTSL 321.26■□□□□ 0.992e-10■■■■□ 26.4
UPF1Q92900 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC20.56■□□□□ 0.882e-10■■■■□ 26.4
UPF1Q92900 GATD1-201ENST00000319863 4357 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.532e-10■■■■□ 26.4
UPF1Q92900 GATD1-202ENST00000354286 3973 ntTSL 510.42□□□□□ -0.742e-10■■■■□ 26.4
UPF1Q92900 IMP4-208ENST00000460766 2379 ntTSL 1 (best)20.63■□□□□ 0.891e-7■■■■□ 26.4
UPF1Q92900 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.934e-6■■■■□ 26.4
UPF1Q92900 FBXO6-202ENST00000449067 928 ntTSL 319.33■□□□□ 0.684e-6■■■■□ 26.4
UPF1Q92900 KIAA0141-205ENST00000507481 1342 ntTSL 516.9■□□□□ 0.38e-7■■■■□ 26.4
UPF1Q92900 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.238e-7■■■■□ 26.4
UPF1Q92900 KIAA0141-202ENST00000432126 4970 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.628e-7■■■■□ 26.4
UPF1Q92900 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.093e-6■■■■□ 26.4
UPF1Q92900 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC19.06■□□□□ 0.647e-34■■■■□ 26.4
UPF1Q92900 TNS1-201ENST00000171887 10331 ntAPPRIS P3 TSL 1 (best) BASIC9.03□□□□□ -0.962e-7■■■■□ 26.4
UPF1Q92900 ATP5G3-201ENST00000284727 5484 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.831e-6■■■■□ 26.4
UPF1Q92900 YKT6-204ENST00000447123 1085 ntTSL 529.17■■■□□ 2.262e-17■■■■□ 26.4
UPF1Q92900 YKT6-203ENST00000424864 673 ntTSL 514.59□□□□□ -0.072e-17■■■■□ 26.4
UPF1Q92900 WDR48-203ENST00000420940 3772 ntTSL 1 (best)6.54□□□□□ -1.365e-9■■■■□ 26.4
UPF1Q92900 WDR48-208ENST00000466405 4925 ntTSL 1 (best)6.21□□□□□ -1.425e-9■■■■□ 26.4
UPF1Q92900 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.62■□□□□ 0.412e-6■■■■□ 26.4
UPF1Q92900 STK4-202ENST00000372806 6342 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.131e-13■■■■□ 26.4
UPF1Q92900 STK4-207ENST00000499879 6161 ntTSL 1 (best) BASIC6.89□□□□□ -1.311e-13■■■■□ 26.4
UPF1Q92900 MIER2-205ENST00000619835 1748 ntTSL 321.6■■□□□ 1.058e-7■■■■□ 26.4
UPF1Q92900 MIER2-201ENST00000264819 6884 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.498e-7■■■■□ 26.4
UPF1Q92900 BTG2-202ENST00000475157 1275 ntTSL 522.56■■□□□ 1.27e-7■■■■□ 26.4
UPF1Q92900 BTG2-201ENST00000290551 2712 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.467e-7■■■■□ 26.4
UPF1Q92900 NDST1-201ENST00000261797 8030 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.611e-7■■■■□ 26.4
UPF1Q92900 TRIB3-204ENST00000615226 877 ntTSL 38.69□□□□□ -1.024e-8■■■■□ 26.4
UPF1Q92900 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.022e-7■■■■□ 26.3
UPF1Q92900 AVL9-203ENST00000446718 6372 ntTSL 59.52□□□□□ -0.892e-7■■■■□ 26.3
UPF1Q92900 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC29.51■■■□□ 2.311e-23■■■■□ 26.3
UPF1Q92900 CDC34-204ENST00000593036 359 ntTSL 322.16■■□□□ 1.149e-9■■■■□ 26.3
UPF1Q92900 MINDY1-203ENST00000361936 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.495e-6■■■■□ 26.3
UPF1Q92900 ARFGAP1-207ENST00000518618 1244 ntTSL 225.42■■□□□ 1.662e-9■■■■□ 26.3
UPF1Q92900 DPY19L4-201ENST00000414645 6197 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.952e-6■■■■□ 26.3
UPF1Q92900 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.661e-11■■■■□ 26.3
UPF1Q92900 ARPC4-TTLL3-203ENST00000424442 903 ntTSL 517.19■□□□□ 0.341e-11■■■■□ 26.3
UPF1Q92900 ARPC4-TTLL3-202ENST00000418163 551 ntTSL 417.03■□□□□ 0.321e-11■■■■□ 26.3
UPF1Q92900 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.21e-11■■■■□ 26.3
UPF1Q92900 ARPC4-TTLL3-204ENST00000453882 499 ntTSL 411.63□□□□□ -0.551e-11■■■■□ 26.3
UPF1Q92900 WDR48-201ENST00000302313 3707 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.135e-9■■■■□ 26.3
UPF1Q92900 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.43e-7■■■■□ 26.3
UPF1Q92900 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.422e-7■■■■□ 26.3
UPF1Q92900 PTPN1-202ENST00000541713 3469 ntTSL 2 BASIC13.49□□□□□ -0.252e-8■■■■□ 26.3
UPF1Q92900 PTPN1-201ENST00000371621 4008 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.612e-8■■■■□ 26.3
UPF1Q92900 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.227e-8■■■■□ 26.3
UPF1Q92900 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.167e-8■■■■□ 26.3
UPF1Q92900 CCDC86-202ENST00000535217 1488 ntTSL 521.53■■□□□ 1.041e-8■■■■□ 26.3
UPF1Q92900 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.531e-8■■■■□ 26.3
UPF1Q92900 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC25.94■■□□□ 1.742e-8■■■■□ 26.3
UPF1Q92900 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.27e-7■■■■□ 26.3
UPF1Q92900 ICMT-202ENST00000474756 1227 ntTSL 234.22■■■■□ 3.074e-7■■■■□ 26.3
UPF1Q92900 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC32.88■■■□□ 2.856e-12■■■■□ 26.3
UPF1Q92900 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC30.64■■■□□ 2.54e-7■■■■□ 26.3
UPF1Q92900 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.084e-7■■■■□ 26.3
UPF1Q92900 IMP4-203ENST00000409935 958 ntTSL 5 BASIC25.16■■□□□ 1.624e-7■■■■□ 26.3
UPF1Q92900 KIAA0930-205ENST00000417906 516 ntTSL 523.45■■□□□ 1.344e-7■■■■□ 26.3
UPF1Q92900 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.944e-7■■■■□ 26.3
UPF1Q92900 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.842e-7■■■■□ 26.3
UPF1Q92900 ABCF1-206ENST00000479542 893 ntTSL 220.1■□□□□ 0.814e-7■■■■□ 26.3
UPF1Q92900 SEC11A-205ENST00000558217 882 ntTSL 219■□□□□ 0.634e-7■■■■□ 26.3
UPF1Q92900 SEC11A-203ENST00000558134 971 ntTSL 3 BASIC18.21■□□□□ 0.514e-7■■■■□ 26.3
UPF1Q92900 IMP4-205ENST00000452955 923 ntTSL 317.62■□□□□ 0.414e-7■■■■□ 26.3
UPF1Q92900 SLC12A9-213ENST00000487651 4462 ntTSL 217.57■□□□□ 0.44e-7■■■■□ 26.3
UPF1Q92900 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.324e-7■■■■□ 26.3
UPF1Q92900 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC16.94■□□□□ 0.34e-7■■■■□ 26.3
UPF1Q92900 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.23e-6■■■■□ 26.3
UPF1Q92900 SLC12A9-209ENST00000467972 4433 ntTSL 215.47■□□□□ 0.074e-7■■■■□ 26.3
UPF1Q92900 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC15.17■□□□□ 0.024e-7■■■■□ 26.3
UPF1Q92900 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -04e-7■■■■□ 26.3
UPF1Q92900 SLC12A9-211ENST00000475687 4128 ntTSL 214.68□□□□□ -0.064e-7■■■■□ 26.3
UPF1Q92900 SEC11A-202ENST00000455959 1223 ntTSL 1 (best) BASIC12.77□□□□□ -0.374e-7■■■■□ 26.3
UPF1Q92900 C9orf64-201ENST00000314700 2067 ntTSL 2 BASIC12.72□□□□□ -0.374e-7■■■■□ 26.3
UPF1Q92900 SEC11A-210ENST00000560409 819 ntTSL 312.58□□□□□ -0.44e-7■■■■□ 26.3
UPF1Q92900 SEC11A-209ENST00000560266 1089 ntTSL 5 BASIC12.33□□□□□ -0.444e-7■■■■□ 26.3
UPF1Q92900 SEC11A-206ENST00000558924 3626 ntTSL 1 (best)12.16□□□□□ -0.464e-7■■■■□ 26.3
UPF1Q92900 SEC11A-207ENST00000559376 2204 nt11.07□□□□□ -0.644e-7■■■■□ 26.3
UPF1Q92900 KIAA0100-201ENST00000389003 6852 ntAPPRIS ALT2 TSL 5 BASIC8.2□□□□□ -1.14e-7■■■■□ 26.3
UPF1Q92900 KIAA0100-203ENST00000544884 6856 ntAPPRIS ALT2 TSL 1 (best) BASIC7.96□□□□□ -1.144e-7■■■■□ 26.3
UPF1Q92900 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC7.29□□□□□ -1.244e-7■■■■□ 26.3
UPF1Q92900 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC6.36□□□□□ -1.394e-7■■■■□ 26.3
UPF1Q92900 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.255e-11■■■■□ 26.3
UPF1Q92900 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.234e-8■■■■□ 26.3
UPF1Q92900 NEK6-212ENST00000539416 2582 ntTSL 2 BASIC13.38□□□□□ -0.274e-8■■■■□ 26.3
UPF1Q92900 NEK6-205ENST00000394199 2535 ntTSL 2 BASIC12.66□□□□□ -0.384e-8■■■■□ 26.3
UPF1Q92900 NEK6-213ENST00000540326 2578 ntTSL 1 (best) BASIC12.16□□□□□ -0.464e-8■■■■□ 26.3
UPF1Q92900 NEK6-215ENST00000546191 2580 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.654e-8■■■■□ 26.3
UPF1Q92900 SZRD1-201ENST00000401088 3636 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.545e-13■■■■□ 26.2
UPF1Q92900 SZRD1-202ENST00000401089 3447 ntTSL 2 BASIC11.54□□□□□ -0.565e-13■■■■□ 26.2
UPF1Q92900 SZRD1-210ENST00000492354 3401 ntTSL 1 (best) BASIC10.93□□□□□ -0.665e-13■■■■□ 26.2
UPF1Q92900 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.045e-7■■■■□ 26.2
UPF1Q92900 EXOSC2-204ENST00000372358 2040 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.253e-10■■■■□ 26.2
UPF1Q92900 EXOSC2-202ENST00000372351 1885 ntTSL 5 BASIC13.12□□□□□ -0.313e-10■■■■□ 26.2
UPF1Q92900 EXOSC2-203ENST00000372352 1957 ntTSL 5 BASIC12.49□□□□□ -0.413e-10■■■■□ 26.2
UPF1Q92900 EXOSC2-211ENST00000546165 1956 ntTSL 2 BASIC12.21□□□□□ -0.453e-10■■■■□ 26.2
UPF1Q92900 EXOSC2-207ENST00000467138 2766 ntTSL 1 (best)10.87□□□□□ -0.673e-10■■■■□ 26.2
UPF1Q92900 EXOSC2-205ENST00000430138 2533 ntTSL 210.1□□□□□ -0.793e-10■■■■□ 26.2
UPF1Q92900 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.116e-7■■■■□ 26.2
UPF1Q92900 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.66■□□□□ 0.16e-7■■■■□ 26.2
Retrieved 100 of 15,879 protein–RNA pairs in 155.7 ms