RNA–Protein interactions for RNA: ENST00000479542.1

ABCF1-206, Transcript of ATP binding cassette subfamily F member 1, humanhuman

TSL 2

Gene ABCF1, Length 893 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF1-206ENST00000479542 NISCHQ9Y2I1 1504 aa33.59■■■□□ 2.97
ABCF1-206ENST00000479542 CCDC180Q9P1Z9 1646 aa30.2■■■□□ 2.43
ABCF1-206ENST00000479542 ABCC9O60706 1549 aa30.17■■■□□ 2.42
ABCF1-206ENST00000479542 RB1CC1Q8TDY2 1594 aa28.79■■■□□ 2.2
ABCF1-206ENST00000479542 NACADO15069 1562 aa28.62■■■□□ 2.17
ABCF1-206ENST00000479542 DNAJC5BQ9UF47 199 aa28.46■■■□□ 2.15
ABCF1-206ENST00000479542 MYO15BQ96JP2 1530 aa28.31■■■□□ 2.12
ABCF1-206ENST00000479542 DCAF8L2P0C7V8 631 aa28.23■■■□□ 2.11
ABCF1-206ENST00000479542 PABPN1Q86U42 306 aaKnown RBP eCLIP28.06■■■□□ 2.08
ABCF1-206ENST00000479542 UNC13AQ9UPW8 1703 aa28.01■■■□□ 2.07
ABCF1-206ENST00000479542 BICRAQ9NZM4 1560 aa27.92■■■□□ 2.06
ABCF1-206ENST00000479542 DCAF1Q9Y4B6 1507 aa27.86■■■□□ 2.05
ABCF1-206ENST00000479542 ZCCHC6Q5VYS8 1495 aaKnown RBP27.8■■■□□ 2.04
ABCF1-206ENST00000479542 SHROOM4Q9ULL8 1493 aa27.72■■■□□ 2.03
ABCF1-206ENST00000479542 SCRIBQ14160 1630 aa27.33■■□□□ 1.97
ABCF1-206ENST00000479542 CC2D2AQ9P2K1 1620 aa27.3■■□□□ 1.96
ABCF1-206ENST00000479542 CECR2Q9BXF3 1484 aa27.25■■□□□ 1.95
ABCF1-206ENST00000479542 EIF4G1Q04637 1599 aaKnown RBP27.24■■□□□ 1.95
ABCF1-206ENST00000479542 NCAPD3P42695 1498 aa26.46■■□□□ 1.83
ABCF1-206ENST00000479542 DNAJC5Q9H3Z4 198 aa26.33■■□□□ 1.81
ABCF1-206ENST00000479542 ATAD2BQ9ULI0 1458 aa26.28■■□□□ 1.8
ABCF1-206ENST00000479542 SMARCA2P51531 1590 aa26.22■■□□□ 1.79
ABCF1-206ENST00000479542 CUX2O14529 1486 aa26.21■■□□□ 1.79
ABCF1-206ENST00000479542 HMGXB3Q12766 1538 aa26.2■■□□□ 1.79
ABCF1-206ENST00000479542 SMARCA4P51532 1647 aa26.17■■□□□ 1.78
ABCF1-206ENST00000479542 BAZ1AQ9NRL2 1556 aaPredicted RBP26.08■■□□□ 1.77
ABCF1-206ENST00000479542 ERCC6Q03468 1493 aa26.08■■□□□ 1.77
ABCF1-206ENST00000479542 PEG3Q9GZU2 1588 aa26.03■■□□□ 1.76
ABCF1-206ENST00000479542 BAZ1BQ9UIG0 1483 aaKnown RBP25.97■■□□□ 1.75
ABCF1-206ENST00000479542 NESP48681 1621 aa25.88■■□□□ 1.73
ABCF1-206ENST00000479542 LAMC3Q9Y6N6 1575 aa25.82■■□□□ 1.72
ABCF1-206ENST00000479542 MROH2BQ7Z745 1585 aa25.81■■□□□ 1.72
ABCF1-206ENST00000479542 PDS5BQ9NTI5 1447 aa25.7■■□□□ 1.7
ABCF1-206ENST00000479542 THOC2Q8NI27 1593 aaKnown RBP25.69■■□□□ 1.7
ABCF1-206ENST00000479542 CADPSQ9ULU8 1353 aa25.61■■□□□ 1.69
ABCF1-206ENST00000479542 KIF21AQ7Z4S6 1674 aa25.52■■□□□ 1.68
ABCF1-206ENST00000479542 WIZO95785 1651 aa25.44■■□□□ 1.66
ABCF1-206ENST00000479542 MRC2Q9UBG0 1479 aa25.41■■□□□ 1.66
ABCF1-206ENST00000479542 WDR62O43379 1518 aa25.37■■□□□ 1.65
ABCF1-206ENST00000479542 CFTRP13569 1480 aa25.29■■□□□ 1.64
ABCF1-206ENST00000479542 RSF1Q96T23 1441 aaPredicted RBP25.29■■□□□ 1.64
ABCF1-206ENST00000479542 CEP164Q9UPV0 1460 aa25.28■■□□□ 1.64
ABCF1-206ENST00000479542 FANCD2Q9BXW9 1451 aa25.24■■□□□ 1.63
ABCF1-206ENST00000479542 TOP2AP11388 1531 aaKnown RBP25.2■■□□□ 1.62
ABCF1-206ENST00000479542 URB2Q14146 1524 aaKnown RBP25.02■■□□□ 1.6
ABCF1-206ENST00000479542 OSCARQ8IYS5 282 aa25■■□□□ 1.59
ABCF1-206ENST00000479542 PRDM2Q13029 1718 aa24.92■■□□□ 1.58
ABCF1-206ENST00000479542 CCDC88BA6NC98 1476 aa24.91■■□□□ 1.58
ABCF1-206ENST00000479542 TRIM41Q8WV44 630 aa24.91■■□□□ 1.58
ABCF1-206ENST00000479542 IFT140Q96RY7 1462 aa24.83■■□□□ 1.56
ABCF1-206ENST00000479542 ABCC8Q09428 1581 aa24.82■■□□□ 1.56
ABCF1-206ENST00000479542 TOPBP1Q92547 1522 aa24.75■■□□□ 1.55
ABCF1-206ENST00000479542 ZNF608Q9ULD9 1512 aaPredicted RBP24.7■■□□□ 1.54
ABCF1-206ENST00000479542 DNMBPQ6XZF7 1577 aa24.66■■□□□ 1.54
ABCF1-206ENST00000479542 RIMBP3CA6NJZ7 1639 aa24.55■■□□□ 1.52
ABCF1-206ENST00000479542 RIMBP3BA6NNM3 1639 aa24.55■■□□□ 1.52
ABCF1-206ENST00000479542 RIMBP3Q9UFD9 1639 aa24.55■■□□□ 1.52
ABCF1-206ENST00000479542 EIF4G3O43432 1585 aaKnown RBP24.54■■□□□ 1.52
ABCF1-206ENST00000479542 TARBP1Q13395 1621 aaKnown RBP24.54■■□□□ 1.52
ABCF1-206ENST00000479542 POLA1P09884 1462 aaPredicted RBP24.5■■□□□ 1.51
ABCF1-206ENST00000479542 ARHGEF11O15085 1522 aa24.5■■□□□ 1.51
ABCF1-206ENST00000479542 AQRO60306 1485 aaKnown RBP eCLIP24.48■■□□□ 1.511e-6■■■■■ 31.8
ABCF1-206ENST00000479542 WDR97A6NE52 1622 aa24.41■■□□□ 1.5
ABCF1-206ENST00000479542 SOGA1O94964 1423 aa24.41■■□□□ 1.5
ABCF1-206ENST00000479542 CHD1O14646 1710 aa24.35■■□□□ 1.49
ABCF1-206ENST00000479542 RAD54L2Q9Y4B4 1467 aa24.34■■□□□ 1.49
ABCF1-206ENST00000479542 CYB5RLQ6IPT4 315 aa24.32■■□□□ 1.48
ABCF1-206ENST00000479542 TDRD9Q8NDG6 1382 aaKnown RBP24.31■■□□□ 1.48
ABCF1-206ENST00000479542 FBLN2P98095 1184 aa24.29■■□□□ 1.48
ABCF1-206ENST00000479542 FGD5Q6ZNL6 1462 aa24.29■■□□□ 1.48
ABCF1-206ENST00000479542 MAGI1Q96QZ7 1491 aaPredicted RBP24.26■■□□□ 1.47
ABCF1-206ENST00000479542 CUX1P39880 1505 aa24.25■■□□□ 1.47
ABCF1-206ENST00000479542 ARAP1Q96P48 1450 aa24.24■■□□□ 1.47
ABCF1-206ENST00000479542 GRIN2BQ13224 1484 aa24.22■■□□□ 1.47
ABCF1-206ENST00000479542 SNAPC4Q5SXM2 1469 aa24.21■■□□□ 1.47
ABCF1-206ENST00000479542 CHMP7Q8WUX9 453 aaPredicted RBP24.2■■□□□ 1.46
ABCF1-206ENST00000479542 CLASP1Q7Z460 1538 aa24.17■■□□□ 1.46
ABCF1-206ENST00000479542 SYNJ2O15056 1496 aa24.15■■□□□ 1.46
ABCF1-206ENST00000479542 SYNJ1O43426 1573 aa24.15■■□□□ 1.46
ABCF1-206ENST00000479542 GAPVD1Q14C86 1478 aa24.1■■□□□ 1.45
ABCF1-206ENST00000479542 ABCA10Q8WWZ4 1543 aa24.1■■□□□ 1.45
ABCF1-206ENST00000479542 TRHP20396 242 aaPredicted RBP24.03■■□□□ 1.44
ABCF1-206ENST00000479542 ABCA5Q8WWZ7 1642 aa24■■□□□ 1.43
ABCF1-206ENST00000479542 PBRM1Q86U86 1689 aa23.99■■□□□ 1.43
ABCF1-206ENST00000479542 WRNQ14191 1432 aaPredicted RBP eCLIP23.97■■□□□ 1.43
ABCF1-206ENST00000479542 SUPT5HO00267 1087 aaKnown RBP23.94■■□□□ 1.42
ABCF1-206ENST00000479542 TOP2BQ02880 1626 aa23.88■■□□□ 1.41
ABCF1-206ENST00000479542 GRIN2AQ12879 1464 aa23.87■■□□□ 1.41
ABCF1-206ENST00000479542 BIVM-ERCC5R4GMW8 1640 aa23.86■■□□□ 1.41
ABCF1-206ENST00000479542 NUP160Q12769 1436 aa23.85■■□□□ 1.41
ABCF1-206ENST00000479542 FHAD1B1AJZ9 1412 aa23.83■■□□□ 1.4
ABCF1-206ENST00000479542 ERICH3Q5RHP9 1530 aa23.8■■□□□ 1.4
ABCF1-206ENST00000479542 ADAMTS12P58397 1594 aa23.8■■□□□ 1.4
ABCF1-206ENST00000479542 CEP170Q5SW79 1584 aa23.74■■□□□ 1.39
ABCF1-206ENST00000479542 SHROOM2Q13796 1616 aa23.73■■□□□ 1.39
ABCF1-206ENST00000479542 ERCC6L2Q5T890 1561 aa23.68■■□□□ 1.38
ABCF1-206ENST00000479542 JPH4Q96JJ6 628 aa23.62■■□□□ 1.37
ABCF1-206ENST00000479542 PRG4Q92954 1404 aaPredicted RBP23.57■■□□□ 1.36
ABCF1-206ENST00000479542 IGF1RP08069 1367 aa23.47■■□□□ 1.35
ABCF1-206ENST00000479542 RUSC2Q8N2Y8 1516 aa23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms