Protein–RNA interactions for Protein: O43353

RIPK2, Receptor-interacting serine/threonine-protein kinase 2, humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK2O43353 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RIPK2O43353 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RIPK2O43353 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RIPK2O43353 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
RIPK2O43353 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
RIPK2O43353 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RIPK2O43353 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RIPK2O43353 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
RIPK2O43353 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC21.05■□□□□ 0.96
RIPK2O43353 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RIPK2O43353 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
RIPK2O43353 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
RIPK2O43353 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RIPK2O43353 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RIPK2O43353 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
RIPK2O43353 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RIPK2O43353 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
RIPK2O43353 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
RIPK2O43353 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
RIPK2O43353 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RIPK2O43353 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.05■□□□□ 0.96
RIPK2O43353 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
RIPK2O43353 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
RIPK2O43353 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RIPK2O43353 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
RIPK2O43353 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
RIPK2O43353 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RIPK2O43353 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
RIPK2O43353 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
RIPK2O43353 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.04■□□□□ 0.96
RIPK2O43353 AC055733.4-201ENST00000638462 1354 ntBASIC21.04■□□□□ 0.96
RIPK2O43353 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RIPK2O43353 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RIPK2O43353 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RIPK2O43353 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC21.04■□□□□ 0.96
RIPK2O43353 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC21.04■□□□□ 0.96
RIPK2O43353 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
RIPK2O43353 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC21.04■□□□□ 0.96
RIPK2O43353 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RIPK2O43353 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC21.03■□□□□ 0.96
RIPK2O43353 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
RIPK2O43353 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RIPK2O43353 EXOC3-AS1-202ENST00000623673 1663 ntBASIC21.03■□□□□ 0.96
RIPK2O43353 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RIPK2O43353 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RIPK2O43353 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.03■□□□□ 0.96
RIPK2O43353 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.03■□□□□ 0.96
RIPK2O43353 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC21.03■□□□□ 0.96
RIPK2O43353 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
RIPK2O43353 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RIPK2O43353 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
RIPK2O43353 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
RIPK2O43353 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21.03■□□□□ 0.96
RIPK2O43353 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RIPK2O43353 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RIPK2O43353 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RIPK2O43353 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
RIPK2O43353 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RIPK2O43353 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RIPK2O43353 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
RIPK2O43353 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
RIPK2O43353 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC21.02■□□□□ 0.96
RIPK2O43353 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RIPK2O43353 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
RIPK2O43353 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RIPK2O43353 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RIPK2O43353 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.96
RIPK2O43353 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
RIPK2O43353 AC133561.4-201ENST00000566112 224 ntBASIC21.02■□□□□ 0.96
RIPK2O43353 AC011484.1-201ENST00000377652 1995 ntBASIC21.02■□□□□ 0.96
RIPK2O43353 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RIPK2O43353 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.96
RIPK2O43353 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC21.02■□□□□ 0.96
RIPK2O43353 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
RIPK2O43353 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
RIPK2O43353 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RIPK2O43353 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RIPK2O43353 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.01■□□□□ 0.95
RIPK2O43353 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RIPK2O43353 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RIPK2O43353 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.01■□□□□ 0.95
RIPK2O43353 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.01■□□□□ 0.95
RIPK2O43353 GRAMD4P7-201ENST00000578182 1232 ntBASIC21.01■□□□□ 0.95
RIPK2O43353 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
RIPK2O43353 AC009237.3-201ENST00000393279 1427 ntBASIC21.01■□□□□ 0.95
RIPK2O43353 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC21.01■□□□□ 0.95
RIPK2O43353 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RIPK2O43353 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
RIPK2O43353 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RIPK2O43353 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC21■□□□□ 0.95
RIPK2O43353 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC21■□□□□ 0.95
RIPK2O43353 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21■□□□□ 0.95
RIPK2O43353 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC21■□□□□ 0.95
RIPK2O43353 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
RIPK2O43353 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC21■□□□□ 0.95
RIPK2O43353 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RIPK2O43353 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC21■□□□□ 0.95
RIPK2O43353 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RIPK2O43353 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
RIPK2O43353 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms