RNA–Protein interactions for RNA: ENST00000366481.3

TRIM58-201, Transcript of tripartite motif containing 58, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM58, Length 3,225 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM58-201ENST00000366481 NISCHQ9Y2I1 1504 aa39.1■■■■□ 3.85
TRIM58-201ENST00000366481 SHROOM4Q9ULL8 1493 aa34.48■■■■□ 3.11
TRIM58-201ENST00000366481 SUPT5HO00267 1087 aaKnown RBP33.89■■■■□ 3.02
TRIM58-201ENST00000366481 DCAF8L2P0C7V8 631 aa33.75■■■□□ 2.99
TRIM58-201ENST00000366481 ZCCHC6Q5VYS8 1495 aaKnown RBP33.01■■■□□ 2.88
TRIM58-201ENST00000366481 HRCP23327 699 aa32.7■■■□□ 2.83
TRIM58-201ENST00000366481 CCDC180Q9P1Z9 1646 aa32.65■■■□□ 2.82
TRIM58-201ENST00000366481 CHIC1Q5VXU3 224 aa32.59■■■□□ 2.81
TRIM58-201ENST00000366481 MYO15BQ96JP2 1530 aa32.48■■■□□ 2.79
TRIM58-201ENST00000366481 PCGF6Q9BYE7 350 aa32.45■■■□□ 2.79
TRIM58-201ENST00000366481 PPARGC1BQ86YN6 1023 aaKnown RBP32.31■■■□□ 2.76
TRIM58-201ENST00000366481 LOC105371045A0A1W2PR82 267 aa32.04■■■□□ 2.72
TRIM58-201ENST00000366481 DCAF1Q9Y4B6 1507 aa31.6■■■□□ 2.65
TRIM58-201ENST00000366481 EHMT2Q96KQ7 1210 aa31.59■■■□□ 2.65
TRIM58-201ENST00000366481 ABCC9O60706 1549 aa31.51■■■□□ 2.63
TRIM58-201ENST00000366481 FAM9AQ8IZU1 332 aaPredicted RBP31.48■■■□□ 2.63
TRIM58-201ENST00000366481 PELP1Q8IZL8 1130 aaKnown RBP31.46■■■□□ 2.63
TRIM58-201ENST00000366481 SCRIBQ14160 1630 aa31.41■■■□□ 2.62
TRIM58-201ENST00000366481 TRIM41Q8WV44 630 aa31.25■■■□□ 2.59
TRIM58-201ENST00000366481 RSF1Q96T23 1441 aaPredicted RBP31.22■■■□□ 2.59
TRIM58-201ENST00000366481 TRIM26Q12899 539 aaPredicted RBP31.14■■■□□ 2.58
TRIM58-201ENST00000366481 SCAF1Q9H7N4 1312 aaKnown RBP30.96■■■□□ 2.55
TRIM58-201ENST00000366481 RB1CC1Q8TDY2 1594 aa30.93■■■□□ 2.54
TRIM58-201ENST00000366481 CECR2Q9BXF3 1484 aa30.88■■■□□ 2.53
TRIM58-201ENST00000366481 ZEB1P37275 1124 aaPredicted RBP30.85■■■□□ 2.53
TRIM58-201ENST00000366481 MROH2BQ7Z745 1585 aa30.63■■■□□ 2.49
TRIM58-201ENST00000366481 TTBK1Q5TCY1 1321 aaPredicted RBP30.52■■■□□ 2.48
TRIM58-201ENST00000366481 PABPN1Q86U42 306 aaKnown RBP eCLIP30.49■■■□□ 2.47
TRIM58-201ENST00000366481 WIZO95785 1651 aa30.43■■■□□ 2.46
TRIM58-201ENST00000366481 NACADO15069 1562 aa30.39■■■□□ 2.45
TRIM58-201ENST00000366481 ACIN1Q9UKV3 1341 aaKnown RBP30.25■■■□□ 2.43
TRIM58-201ENST00000366481 NEUROD1Q13562 356 aa30.23■■■□□ 2.43
TRIM58-201ENST00000366481 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.2■■■□□ 2.42
TRIM58-201ENST00000366481 GTF3C3Q9Y5Q9 886 aa30.18■■■□□ 2.42
TRIM58-201ENST00000366481 MYT1Q01538 1121 aa30.18■■■□□ 2.42
TRIM58-201ENST00000366481 CENPBP07199 599 aaPredicted RBP30.1■■■□□ 2.41
TRIM58-201ENST00000366481 CCER1Q8TC90 406 aaPredicted RBP30.1■■■□□ 2.41
TRIM58-201ENST00000366481 ABCC8Q09428 1581 aa30.03■■■□□ 2.4
TRIM58-201ENST00000366481 CCDC88BA6NC98 1476 aa29.94■■■□□ 2.38
TRIM58-201ENST00000366481 BAZ1AQ9NRL2 1556 aaPredicted RBP29.93■■■□□ 2.38
TRIM58-201ENST00000366481 DIEXFQ68CQ4 756 aaKnown RBP29.93■■■□□ 2.38
TRIM58-201ENST00000366481 UBTFP17480 764 aaKnown RBP29.89■■■□□ 2.38
TRIM58-201ENST00000366481 SOGA1O94964 1423 aa29.85■■■□□ 2.37
TRIM58-201ENST00000366481 YTHDC1Q96MU7 727 aaKnown RBP29.8■■■□□ 2.36
TRIM58-201ENST00000366481 RANGAP1P46060 587 aaPredicted RBP29.77■■■□□ 2.36
TRIM58-201ENST00000366481 RUSC2Q8N2Y8 1516 aa29.73■■■□□ 2.35
TRIM58-201ENST00000366481 TOP2AP11388 1531 aaKnown RBP29.69■■■□□ 2.34
TRIM58-201ENST00000366481 SMARCA4P51532 1647 aa29.69■■■□□ 2.34
TRIM58-201ENST00000366481 EIF4G1Q04637 1599 aaKnown RBP29.68■■■□□ 2.34
TRIM58-201ENST00000366481 CSRNP3Q8WYN3 585 aa29.66■■■□□ 2.34
TRIM58-201ENST00000366481 CEP162Q5TB80 1403 aa29.64■■■□□ 2.34
TRIM58-201ENST00000366481 SMARCA2P51531 1590 aa29.63■■■□□ 2.33
TRIM58-201ENST00000366481 UNC13AQ9UPW8 1703 aa29.47■■■□□ 2.31
TRIM58-201ENST00000366481 HNRNPUL2Q1KMD3 747 aaKnown RBP29.46■■■□□ 2.31
TRIM58-201ENST00000366481 TNIKQ9UKE5 1360 aa29.4■■■□□ 2.3
TRIM58-201ENST00000366481 WRNQ14191 1432 aaPredicted RBP eCLIP29.35■■■□□ 2.29
TRIM58-201ENST00000366481 ZNF316A6NFI3 1004 aaPredicted RBP29.26■■■□□ 2.27
TRIM58-201ENST00000366481 BICRAQ9NZM4 1560 aa29.24■■■□□ 2.27
TRIM58-201ENST00000366481 GOLGA3Q08378 1498 aa29.2■■■□□ 2.27
TRIM58-201ENST00000366481 EEA1Q15075 1411 aa29.13■■■□□ 2.25
TRIM58-201ENST00000366481 APLP2Q06481 763 aa29.12■■■□□ 2.25
TRIM58-201ENST00000366481 MIER1Q8N108 512 aa29.12■■■□□ 2.25
TRIM58-201ENST00000366481 SYNJ1O43426 1573 aa29.11■■■□□ 2.25
TRIM58-201ENST00000366481 CLIP1P30622 1438 aa29.07■■■□□ 2.24
TRIM58-201ENST00000366481 ATAD2BQ9ULI0 1458 aa29.05■■■□□ 2.24
TRIM58-201ENST00000366481 BAZ1BQ9UIG0 1483 aaKnown RBP29.04■■■□□ 2.24
TRIM58-201ENST00000366481 RAPGEF2Q9Y4G8 1499 aa29.01■■■□□ 2.23
TRIM58-201ENST00000366481 CEP164Q9UPV0 1460 aa28.98■■■□□ 2.23
TRIM58-201ENST00000366481 VPS8Q8N3P4 1428 aa28.8■■■□□ 2.2
TRIM58-201ENST00000366481 PEG3Q9GZU2 1588 aa28.79■■■□□ 2.2
TRIM58-201ENST00000366481 ITGAEP38570 1179 aa28.78■■■□□ 2.2
TRIM58-201ENST00000366481 KANK4Q5T7N3 995 aaPredicted RBP28.76■■■□□ 2.19
TRIM58-201ENST00000366481 KIF21BO75037 1637 aa28.69■■■□□ 2.18
TRIM58-201ENST00000366481 SUPT16HQ9Y5B9 1047 aaKnown RBP28.57■■■□□ 2.16
TRIM58-201ENST00000366481 TOP2BQ02880 1626 aa28.51■■■□□ 2.15
TRIM58-201ENST00000366481 ANP32EQ9BTT0 268 aa28.47■■■□□ 2.15
TRIM58-201ENST00000366481 ATP1B4Q9UN42 357 aaPredicted RBP28.47■■■□□ 2.15
TRIM58-201ENST00000366481 ARAP1Q96P48 1450 aa28.45■■■□□ 2.14
TRIM58-201ENST00000366481 P3H3Q8IVL6 736 aa28.45■■■□□ 2.14
TRIM58-201ENST00000366481 BCANQ96GW7 911 aa28.43■■■□□ 2.14
TRIM58-201ENST00000366481 CUX1P39880 1505 aa28.43■■■□□ 2.14
TRIM58-201ENST00000366481 PRXQ9BXM0 1461 aa28.42■■■□□ 2.14
TRIM58-201ENST00000366481 BCL11AQ9H165 835 aa28.41■■■□□ 2.14
TRIM58-201ENST00000366481 TSHZ2Q9NRE2 1034 aa28.4■■■□□ 2.14
TRIM58-201ENST00000366481 KIF27Q86VH2 1401 aa28.38■■■□□ 2.13
TRIM58-201ENST00000366481 DHX57Q6P158 1386 aaKnown RBP28.37■■■□□ 2.13
TRIM58-201ENST00000366481 NCAPD3P42695 1498 aa28.3■■■□□ 2.12
TRIM58-201ENST00000366481 CLSPNQ9HAW4 1339 aa28.28■■■□□ 2.12
TRIM58-201ENST00000366481 BIVM-ERCC5R4GMW8 1640 aa28.25■■■□□ 2.11
TRIM58-201ENST00000366481 CUX2O14529 1486 aa28.24■■■□□ 2.11
TRIM58-201ENST00000366481 FAM50AQ14320 339 aaKnown RBP28.22■■■□□ 2.11
TRIM58-201ENST00000366481 ARHGAP35Q9NRY4 1499 aa28.21■■■□□ 2.11
TRIM58-201ENST00000366481 ERICH3Q5RHP9 1530 aa28.2■■■□□ 2.1
TRIM58-201ENST00000366481 CFTRP13569 1480 aa28.18■■■□□ 2.1
TRIM58-201ENST00000366481 CCNB3Q8WWL7 1395 aa28.18■■■□□ 2.1
TRIM58-201ENST00000366481 IGF1RP08069 1367 aa28.15■■■□□ 2.1
TRIM58-201ENST00000366481 DNAJC5BQ9UF47 199 aa28.14■■■□□ 2.09
TRIM58-201ENST00000366481 HMGXB3Q12766 1538 aa28.11■■■□□ 2.09
TRIM58-201ENST00000366481 FKBP8Q14318 412 aa28.09■■■□□ 2.09
TRIM58-201ENST00000366481 SIN3AQ96ST3 1273 aa28.08■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms