RNA–Protein interactions for RNA: ENST00000409808.6

LIMS2-207, Transcript of LIM zinc finger domain containing 2, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene LIMS2, Length 2,315 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-207ENST00000409808 NISCHQ9Y2I1 1504 aa43.56■■■■■ 4.56
LIMS2-207ENST00000409808 CCDC180Q9P1Z9 1646 aa37.8■■■■□ 3.64
LIMS2-207ENST00000409808 ZCCHC6Q5VYS8 1495 aaKnown RBP36.59■■■■□ 3.45
LIMS2-207ENST00000409808 DCAF8L2P0C7V8 631 aa36.23■■■■□ 3.39
LIMS2-207ENST00000409808 ABCC9O60706 1549 aa35.93■■■■□ 3.34
LIMS2-207ENST00000409808 SHROOM4Q9ULL8 1493 aa35.91■■■■□ 3.34
LIMS2-207ENST00000409808 DCAF1Q9Y4B6 1507 aa35.85■■■■□ 3.33
LIMS2-207ENST00000409808 MYO15BQ96JP2 1530 aa35.34■■■■□ 3.25
LIMS2-207ENST00000409808 NACADO15069 1562 aa35.2■■■■□ 3.23
LIMS2-207ENST00000409808 SCRIBQ14160 1630 aa35.02■■■■□ 3.2
LIMS2-207ENST00000409808 RB1CC1Q8TDY2 1594 aa34.92■■■■□ 3.18
LIMS2-207ENST00000409808 SUPT5HO00267 1087 aaKnown RBP34.58■■■■□ 3.13
LIMS2-207ENST00000409808 UNC13AQ9UPW8 1703 aa34.36■■■■□ 3.09
LIMS2-207ENST00000409808 PABPN1Q86U42 306 aaKnown RBP eCLIP33.99■■■■□ 3.03
LIMS2-207ENST00000409808 CECR2Q9BXF3 1484 aa33.97■■■■□ 3.03
LIMS2-207ENST00000409808 BICRAQ9NZM4 1560 aa33.97■■■■□ 3.03
LIMS2-207ENST00000409808 RSF1Q96T23 1441 aaPredicted RBP33.89■■■■□ 3.02
LIMS2-207ENST00000409808 MROH2BQ7Z745 1585 aa33.75■■■□□ 2.99
LIMS2-207ENST00000409808 BAZ1AQ9NRL2 1556 aaPredicted RBP33.57■■■□□ 2.97
LIMS2-207ENST00000409808 WIZO95785 1651 aa33.51■■■□□ 2.95
LIMS2-207ENST00000409808 SMARCA4P51532 1647 aa33.47■■■□□ 2.95
LIMS2-207ENST00000409808 CHIC1Q5VXU3 224 aa33.06■■■□□ 2.88
LIMS2-207ENST00000409808 TOP2AP11388 1531 aaKnown RBP33.02■■■□□ 2.88
LIMS2-207ENST00000409808 PEG3Q9GZU2 1588 aa32.95■■■□□ 2.87
LIMS2-207ENST00000409808 EIF4G1Q04637 1599 aaKnown RBP32.91■■■□□ 2.86
LIMS2-207ENST00000409808 ATAD2BQ9ULI0 1458 aa32.9■■■□□ 2.86
LIMS2-207ENST00000409808 SMARCA2P51531 1590 aa32.8■■■□□ 2.84
LIMS2-207ENST00000409808 CCDC88BA6NC98 1476 aa32.78■■■□□ 2.84
LIMS2-207ENST00000409808 BAZ1BQ9UIG0 1483 aaKnown RBP32.72■■■□□ 2.83
LIMS2-207ENST00000409808 NCAPD3P42695 1498 aa32.53■■■□□ 2.8
LIMS2-207ENST00000409808 HMGXB3Q12766 1538 aa32.46■■■□□ 2.79
LIMS2-207ENST00000409808 CC2D2AQ9P2K1 1620 aa32.43■■■□□ 2.78
LIMS2-207ENST00000409808 TRIM41Q8WV44 630 aa32.39■■■□□ 2.78
LIMS2-207ENST00000409808 ABCC8Q09428 1581 aa32.22■■■□□ 2.75
LIMS2-207ENST00000409808 HRCP23327 699 aa32.17■■■□□ 2.74
LIMS2-207ENST00000409808 FAM9AQ8IZU1 332 aaPredicted RBP31.97■■■□□ 2.71
LIMS2-207ENST00000409808 LOC105371045A0A1W2PR82 267 aa31.94■■■□□ 2.7
LIMS2-207ENST00000409808 PCGF6Q9BYE7 350 aa31.91■■■□□ 2.7
LIMS2-207ENST00000409808 CFTRP13569 1480 aa31.87■■■□□ 2.69
LIMS2-207ENST00000409808 WRNQ14191 1432 aaPredicted RBP eCLIP31.87■■■□□ 2.69
LIMS2-207ENST00000409808 DNAJC5BQ9UF47 199 aa31.84■■■□□ 2.69
LIMS2-207ENST00000409808 SYNJ1O43426 1573 aa31.79■■■□□ 2.68
LIMS2-207ENST00000409808 CADPSQ9ULU8 1353 aa31.76■■■□□ 2.67
LIMS2-207ENST00000409808 PRDM2Q13029 1718 aa31.67■■■□□ 2.66
LIMS2-207ENST00000409808 EHMT2Q96KQ7 1210 aa31.65■■■□□ 2.66
LIMS2-207ENST00000409808 SOGA1O94964 1423 aa31.63■■■□□ 2.65
LIMS2-207ENST00000409808 NESP48681 1621 aa31.6■■■□□ 2.65
LIMS2-207ENST00000409808 TOP2BQ02880 1626 aa31.56■■■□□ 2.64
LIMS2-207ENST00000409808 RUSC2Q8N2Y8 1516 aa31.55■■■□□ 2.64
LIMS2-207ENST00000409808 CUX1P39880 1505 aa31.53■■■□□ 2.64
LIMS2-207ENST00000409808 TRIM26Q12899 539 aaPredicted RBP31.52■■■□□ 2.64
LIMS2-207ENST00000409808 BIVM-ERCC5R4GMW8 1640 aa31.51■■■□□ 2.63
LIMS2-207ENST00000409808 FANCD2Q9BXW9 1451 aa31.44■■■□□ 2.62
LIMS2-207ENST00000409808 LAMC3Q9Y6N6 1575 aa31.39■■■□□ 2.62
LIMS2-207ENST00000409808 CSRNP3Q8WYN3 585 aa31.33■■■□□ 2.61
LIMS2-207ENST00000409808 EEA1Q15075 1411 aa31.33■■■□□ 2.61
LIMS2-207ENST00000409808 CEP164Q9UPV0 1460 aa31.2■■■□□ 2.59
LIMS2-207ENST00000409808 PDS5BQ9NTI5 1447 aa31.17■■■□□ 2.58
LIMS2-207ENST00000409808 PPARGC1BQ86YN6 1023 aaKnown RBP31.16■■■□□ 2.58
LIMS2-207ENST00000409808 FGD5Q6ZNL6 1462 aa31.16■■■□□ 2.58
LIMS2-207ENST00000409808 KIF21AQ7Z4S6 1674 aa31.15■■■□□ 2.58
LIMS2-207ENST00000409808 DNMBPQ6XZF7 1577 aa31.12■■■□□ 2.57
LIMS2-207ENST00000409808 TOPBP1Q92547 1522 aa31.11■■■□□ 2.57
LIMS2-207ENST00000409808 URB2Q14146 1524 aaKnown RBP31.08■■■□□ 2.57
LIMS2-207ENST00000409808 ZEB1P37275 1124 aaPredicted RBP31.05■■■□□ 2.56
LIMS2-207ENST00000409808 UBTFP17480 764 aaKnown RBP31.02■■■□□ 2.56
LIMS2-207ENST00000409808 KIF27Q86VH2 1401 aa31.02■■■□□ 2.56
LIMS2-207ENST00000409808 GOLGA3Q08378 1498 aa31.02■■■□□ 2.56
LIMS2-207ENST00000409808 KIF21BO75037 1637 aa30.99■■■□□ 2.55
LIMS2-207ENST00000409808 CUX2O14529 1486 aa30.99■■■□□ 2.55
LIMS2-207ENST00000409808 POLA1P09884 1462 aaPredicted RBP30.98■■■□□ 2.55
LIMS2-207ENST00000409808 RAD54L2Q9Y4B4 1467 aa30.97■■■□□ 2.55
LIMS2-207ENST00000409808 TNIKQ9UKE5 1360 aa30.94■■■□□ 2.54
LIMS2-207ENST00000409808 RAPGEF2Q9Y4G8 1499 aa30.94■■■□□ 2.54
LIMS2-207ENST00000409808 CEP162Q5TB80 1403 aa30.85■■■□□ 2.53
LIMS2-207ENST00000409808 PRXQ9BXM0 1461 aa30.85■■■□□ 2.53
LIMS2-207ENST00000409808 ABCA10Q8WWZ4 1543 aa30.81■■■□□ 2.52
LIMS2-207ENST00000409808 IGF1RP08069 1367 aa30.8■■■□□ 2.52
LIMS2-207ENST00000409808 MRC2Q9UBG0 1479 aa30.79■■■□□ 2.52
LIMS2-207ENST00000409808 ERICH3Q5RHP9 1530 aa30.74■■■□□ 2.51
LIMS2-207ENST00000409808 ERCC6Q03468 1493 aa30.72■■■□□ 2.51
LIMS2-207ENST00000409808 WDR97A6NE52 1622 aa30.71■■■□□ 2.51
LIMS2-207ENST00000409808 RANGAP1P46060 587 aaPredicted RBP30.68■■■□□ 2.5
LIMS2-207ENST00000409808 TDRD9Q8NDG6 1382 aaKnown RBP30.67■■■□□ 2.5
LIMS2-207ENST00000409808 CARMIL1Q5VZK9 1371 aa30.64■■■□□ 2.5
LIMS2-207ENST00000409808 TARBP1Q13395 1621 aaKnown RBP30.63■■■□□ 2.49
LIMS2-207ENST00000409808 WDR62O43379 1518 aa30.6■■■□□ 2.49
LIMS2-207ENST00000409808 CLIP1P30622 1438 aa30.58■■■□□ 2.49
LIMS2-207ENST00000409808 ABCA5Q8WWZ7 1642 aa30.56■■■□□ 2.48
LIMS2-207ENST00000409808 GAPVD1Q14C86 1478 aa30.53■■■□□ 2.48
LIMS2-207ENST00000409808 THOC2Q8NI27 1593 aaKnown RBP30.53■■■□□ 2.48
LIMS2-207ENST00000409808 AQRO60306 1485 aaKnown RBP eCLIP30.45■■■□□ 2.46
LIMS2-207ENST00000409808 CUL7Q14999 1698 aa30.43■■■□□ 2.46
LIMS2-207ENST00000409808 IFT140Q96RY7 1462 aa30.4■■■□□ 2.46
LIMS2-207ENST00000409808 ZNF608Q9ULD9 1512 aaPredicted RBP30.4■■■□□ 2.46
LIMS2-207ENST00000409808 PBRM1Q86U86 1689 aa30.35■■■□□ 2.45
LIMS2-207ENST00000409808 VPS8Q8N3P4 1428 aa30.28■■■□□ 2.44
LIMS2-207ENST00000409808 ARAP1Q96P48 1450 aa30.28■■■□□ 2.44
LIMS2-207ENST00000409808 TTBK1Q5TCY1 1321 aaPredicted RBP30.28■■■□□ 2.44
LIMS2-207ENST00000409808 ARHGAP35Q9NRY4 1499 aa30.25■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms