RNA–Protein interactions for RNA: ENST00000458059.7

CNEP1R1-203, Transcript of CTD nuclear envelope phosphatase 1 regulatory subunit 1, humanhuman

TSL 1 (best) BASIC

Gene CNEP1R1, Length 2,965 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNEP1R1-203ENST00000458059 NISCHQ9Y2I1 1504 aa39.24■■■■□ 3.87
CNEP1R1-203ENST00000458059 SHROOM4Q9ULL8 1493 aa34.6■■■■□ 3.13
CNEP1R1-203ENST00000458059 SUPT5HO00267 1087 aaKnown RBP34.08■■■■□ 3.05
CNEP1R1-203ENST00000458059 DCAF8L2P0C7V8 631 aa33.51■■■□□ 2.96
CNEP1R1-203ENST00000458059 ZCCHC6Q5VYS8 1495 aaKnown RBP33.18■■■□□ 2.9
CNEP1R1-203ENST00000458059 CHIC1Q5VXU3 224 aa32.88■■■□□ 2.85
CNEP1R1-203ENST00000458059 MYO15BQ96JP2 1530 aa32.87■■■□□ 2.85
CNEP1R1-203ENST00000458059 CCDC180Q9P1Z9 1646 aa32.82■■■□□ 2.84
CNEP1R1-203ENST00000458059 PCGF6Q9BYE7 350 aa32.53■■■□□ 2.8
CNEP1R1-203ENST00000458059 HRCP23327 699 aa32.39■■■□□ 2.78
CNEP1R1-203ENST00000458059 LOC105371045A0A1W2PR82 267 aa32.28■■■□□ 2.76
CNEP1R1-203ENST00000458059 PPARGC1BQ86YN6 1023 aaKnown RBP32.16■■■□□ 2.74
CNEP1R1-203ENST00000458059 DCAF1Q9Y4B6 1507 aa31.76■■■□□ 2.67
CNEP1R1-203ENST00000458059 EHMT2Q96KQ7 1210 aa31.71■■■□□ 2.67
CNEP1R1-203ENST00000458059 FAM9AQ8IZU1 332 aaPredicted RBP31.63■■■□□ 2.65
CNEP1R1-203ENST00000458059 SCRIBQ14160 1630 aa31.5■■■□□ 2.63
CNEP1R1-203ENST00000458059 TRIM26Q12899 539 aaPredicted RBP31.43■■■□□ 2.62
CNEP1R1-203ENST00000458059 TRIM41Q8WV44 630 aa31.43■■■□□ 2.62
CNEP1R1-203ENST00000458059 ABCC9O60706 1549 aa31.36■■■□□ 2.61
CNEP1R1-203ENST00000458059 RSF1Q96T23 1441 aaPredicted RBP31.34■■■□□ 2.61
CNEP1R1-203ENST00000458059 RB1CC1Q8TDY2 1594 aa31.15■■■□□ 2.58
CNEP1R1-203ENST00000458059 CECR2Q9BXF3 1484 aa30.93■■■□□ 2.54
CNEP1R1-203ENST00000458059 MROH2BQ7Z745 1585 aa30.73■■■□□ 2.51
CNEP1R1-203ENST00000458059 TTBK1Q5TCY1 1321 aaPredicted RBP30.7■■■□□ 2.5
CNEP1R1-203ENST00000458059 ZEB1P37275 1124 aaPredicted RBP30.67■■■□□ 2.5
CNEP1R1-203ENST00000458059 WIZO95785 1651 aa30.6■■■□□ 2.49
CNEP1R1-203ENST00000458059 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.52■■■□□ 2.48
CNEP1R1-203ENST00000458059 NACADO15069 1562 aa30.43■■■□□ 2.46
CNEP1R1-203ENST00000458059 CCER1Q8TC90 406 aaPredicted RBP30.35■■■□□ 2.45
CNEP1R1-203ENST00000458059 SCAF1Q9H7N4 1312 aaKnown RBP30.23■■■□□ 2.43
CNEP1R1-203ENST00000458059 ABCC8Q09428 1581 aa30.21■■■□□ 2.43
CNEP1R1-203ENST00000458059 BAZ1AQ9NRL2 1556 aaPredicted RBP30.13■■■□□ 2.41
CNEP1R1-203ENST00000458059 CCDC88BA6NC98 1476 aa30.1■■■□□ 2.41
CNEP1R1-203ENST00000458059 UBTFP17480 764 aaKnown RBP30.03■■■□□ 2.4
CNEP1R1-203ENST00000458059 SOGA1O94964 1423 aa30■■■□□ 2.39
CNEP1R1-203ENST00000458059 PABPN1Q86U42 306 aaKnown RBP eCLIP29.99■■■□□ 2.39
CNEP1R1-203ENST00000458059 EIF4G1Q04637 1599 aaKnown RBP29.95■■■□□ 2.39
CNEP1R1-203ENST00000458059 CEP162Q5TB80 1403 aa29.9■■■□□ 2.38
CNEP1R1-203ENST00000458059 RUSC2Q8N2Y8 1516 aa29.88■■■□□ 2.37
CNEP1R1-203ENST00000458059 TOP2AP11388 1531 aaKnown RBP29.85■■■□□ 2.37
CNEP1R1-203ENST00000458059 RANGAP1P46060 587 aaPredicted RBP29.82■■■□□ 2.36
CNEP1R1-203ENST00000458059 DIEXFQ68CQ4 756 aaKnown RBP29.82■■■□□ 2.36
CNEP1R1-203ENST00000458059 SMARCA4P51532 1647 aa29.81■■■□□ 2.36
CNEP1R1-203ENST00000458059 NEUROD1Q13562 356 aa29.81■■■□□ 2.36
CNEP1R1-203ENST00000458059 CSRNP3Q8WYN3 585 aa29.8■■■□□ 2.36
CNEP1R1-203ENST00000458059 SMARCA2P51531 1590 aa29.8■■■□□ 2.36
CNEP1R1-203ENST00000458059 ACIN1Q9UKV3 1341 aaKnown RBP29.69■■■□□ 2.34
CNEP1R1-203ENST00000458059 HNRNPUL2Q1KMD3 747 aaKnown RBP29.68■■■□□ 2.34
CNEP1R1-203ENST00000458059 TNIKQ9UKE5 1360 aa29.64■■■□□ 2.34
CNEP1R1-203ENST00000458059 WRNQ14191 1432 aaPredicted RBP eCLIP29.6■■■□□ 2.33
CNEP1R1-203ENST00000458059 UNC13AQ9UPW8 1703 aa29.6■■■□□ 2.33
CNEP1R1-203ENST00000458059 YTHDC1Q96MU7 727 aaKnown RBP29.57■■■□□ 2.32
CNEP1R1-203ENST00000458059 GTF3C3Q9Y5Q9 886 aa29.57■■■□□ 2.32
CNEP1R1-203ENST00000458059 PELP1Q8IZL8 1130 aaKnown RBP29.46■■■□□ 2.31
CNEP1R1-203ENST00000458059 CENPBP07199 599 aaPredicted RBP29.44■■■□□ 2.3
CNEP1R1-203ENST00000458059 GOLGA3Q08378 1498 aa29.44■■■□□ 2.3
CNEP1R1-203ENST00000458059 ZNF316A6NFI3 1004 aaPredicted RBP29.39■■■□□ 2.3
CNEP1R1-203ENST00000458059 EEA1Q15075 1411 aa29.37■■■□□ 2.29
CNEP1R1-203ENST00000458059 APLP2Q06481 763 aa29.31■■■□□ 2.28
CNEP1R1-203ENST00000458059 SYNJ1O43426 1573 aa29.29■■■□□ 2.28
CNEP1R1-203ENST00000458059 CLIP1P30622 1438 aa29.28■■■□□ 2.28
CNEP1R1-203ENST00000458059 BICRAQ9NZM4 1560 aa29.24■■■□□ 2.27
CNEP1R1-203ENST00000458059 MIER1Q8N108 512 aa29.22■■■□□ 2.27
CNEP1R1-203ENST00000458059 CEP164Q9UPV0 1460 aa29.2■■■□□ 2.26
CNEP1R1-203ENST00000458059 RAPGEF2Q9Y4G8 1499 aa29.17■■■□□ 2.26
CNEP1R1-203ENST00000458059 BAZ1BQ9UIG0 1483 aaKnown RBP29.08■■■□□ 2.25
CNEP1R1-203ENST00000458059 ATAD2BQ9ULI0 1458 aa29.06■■■□□ 2.24
CNEP1R1-203ENST00000458059 VPS8Q8N3P4 1428 aa29.05■■■□□ 2.24
CNEP1R1-203ENST00000458059 KIF21BO75037 1637 aa28.98■■■□□ 2.23
CNEP1R1-203ENST00000458059 ITGAEP38570 1179 aa28.93■■■□□ 2.22
CNEP1R1-203ENST00000458059 PEG3Q9GZU2 1588 aa28.91■■■□□ 2.22
CNEP1R1-203ENST00000458059 KANK4Q5T7N3 995 aaPredicted RBP28.91■■■□□ 2.22
CNEP1R1-203ENST00000458059 TOP2BQ02880 1626 aa28.69■■■□□ 2.18
CNEP1R1-203ENST00000458059 DHX57Q6P158 1386 aaKnown RBP28.67■■■□□ 2.18
CNEP1R1-203ENST00000458059 ARAP1Q96P48 1450 aa28.66■■■□□ 2.18
CNEP1R1-203ENST00000458059 PRXQ9BXM0 1461 aa28.57■■■□□ 2.16
CNEP1R1-203ENST00000458059 CUX1P39880 1505 aa28.53■■■□□ 2.16
CNEP1R1-203ENST00000458059 ATP1B4Q9UN42 357 aaPredicted RBP28.52■■■□□ 2.16
CNEP1R1-203ENST00000458059 KIF27Q86VH2 1401 aa28.49■■■□□ 2.15
CNEP1R1-203ENST00000458059 P3H3Q8IVL6 736 aa28.47■■■□□ 2.15
CNEP1R1-203ENST00000458059 BIVM-ERCC5R4GMW8 1640 aa28.47■■■□□ 2.15
CNEP1R1-203ENST00000458059 ERICH3Q5RHP9 1530 aa28.43■■■□□ 2.14
CNEP1R1-203ENST00000458059 CCNB3Q8WWL7 1395 aa28.41■■■□□ 2.14
CNEP1R1-203ENST00000458059 KCNH8Q96L42 1107 aa28.4■■■□□ 2.14
CNEP1R1-203ENST00000458059 ARHGAP35Q9NRY4 1499 aa28.38■■■□□ 2.13
CNEP1R1-203ENST00000458059 FAM50AQ14320 339 aaKnown RBP28.36■■■□□ 2.13
CNEP1R1-203ENST00000458059 CLSPNQ9HAW4 1339 aa28.36■■■□□ 2.13
CNEP1R1-203ENST00000458059 RRBP1Q9P2E9 1410 aaKnown RBP28.32■■■□□ 2.12
CNEP1R1-203ENST00000458059 CUX2O14529 1486 aa28.3■■■□□ 2.12
CNEP1R1-203ENST00000458059 SIN3AQ96ST3 1273 aa28.29■■■□□ 2.12
CNEP1R1-203ENST00000458059 HIRIP3Q9BW71 556 aaPredicted RBP28.29■■■□□ 2.12
CNEP1R1-203ENST00000458059 RAB3GAP2Q9H2M9 1393 aa28.29■■■□□ 2.12
CNEP1R1-203ENST00000458059 NCAPD3P42695 1498 aa28.27■■■□□ 2.12
CNEP1R1-203ENST00000458059 SUPT16HQ9Y5B9 1047 aaKnown RBP28.27■■■□□ 2.12
CNEP1R1-203ENST00000458059 CFTRP13569 1480 aa28.21■■■□□ 2.11
CNEP1R1-203ENST00000458059 IGF1RP08069 1367 aa28.2■■■□□ 2.11
CNEP1R1-203ENST00000458059 DDX10Q13206 875 aaKnown RBP28.19■■■□□ 2.1
CNEP1R1-203ENST00000458059 BCANQ96GW7 911 aa28.17■■■□□ 2.1
CNEP1R1-203ENST00000458059 HMGXB3Q12766 1538 aa28.17■■■□□ 2.1
CNEP1R1-203ENST00000458059 CARMIL1Q5VZK9 1371 aa28.14■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms