RNA–Protein interactions for RNA: ENST00000243056.4

HOXC13-201, Transcript of homeobox C13, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC13, Length 2,423 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC13-201ENST00000243056 NISCHQ9Y2I1 1504 aa42.45■■■■■ 4.39
HOXC13-201ENST00000243056 CCDC180Q9P1Z9 1646 aa36.79■■■■□ 3.48
HOXC13-201ENST00000243056 DCAF8L2P0C7V8 631 aa35.74■■■■□ 3.31
HOXC13-201ENST00000243056 ZCCHC6Q5VYS8 1495 aaKnown RBP35.58■■■■□ 3.29
HOXC13-201ENST00000243056 ABCC9O60706 1549 aa35.56■■■■□ 3.28
HOXC13-201ENST00000243056 SHROOM4Q9ULL8 1493 aa35.1■■■■□ 3.21
HOXC13-201ENST00000243056 DCAF1Q9Y4B6 1507 aa34.81■■■■□ 3.16
HOXC13-201ENST00000243056 NACADO15069 1562 aa34.42■■■■□ 3.1
HOXC13-201ENST00000243056 MYO15BQ96JP2 1530 aa34.39■■■■□ 3.1
HOXC13-201ENST00000243056 SCRIBQ14160 1630 aa34.28■■■■□ 3.08
HOXC13-201ENST00000243056 RB1CC1Q8TDY2 1594 aa34.22■■■■□ 3.07
HOXC13-201ENST00000243056 PABPN1Q86U42 306 aaKnown RBP eCLIP33.7■■■□□ 2.98
HOXC13-201ENST00000243056 SUPT5HO00267 1087 aaKnown RBP33.65■■■□□ 2.98
HOXC13-201ENST00000243056 UNC13AQ9UPW8 1703 aa33.64■■■□□ 2.98
HOXC13-201ENST00000243056 PELP1Q8IZL8 1130 aaKnown RBP33.58■■■□□ 2.97
HOXC13-201ENST00000243056 HRCP23327 699 aa33.57■■■□□ 2.96
HOXC13-201ENST00000243056 BICRAQ9NZM4 1560 aa33.36■■■□□ 2.93
HOXC13-201ENST00000243056 CECR2Q9BXF3 1484 aa33.27■■■□□ 2.92
HOXC13-201ENST00000243056 RSF1Q96T23 1441 aaPredicted RBP33■■■□□ 2.87
HOXC13-201ENST00000243056 MROH2BQ7Z745 1585 aa32.96■■■□□ 2.87
HOXC13-201ENST00000243056 PPARGC1BQ86YN6 1023 aaKnown RBP32.89■■■□□ 2.86
HOXC13-201ENST00000243056 BAZ1AQ9NRL2 1556 aaPredicted RBP32.71■■■□□ 2.83
HOXC13-201ENST00000243056 WIZO95785 1651 aa32.67■■■□□ 2.82
HOXC13-201ENST00000243056 SMARCA4P51532 1647 aa32.65■■■□□ 2.82
HOXC13-201ENST00000243056 MYT1Q01538 1121 aa32.49■■■□□ 2.79
HOXC13-201ENST00000243056 PCGF6Q9BYE7 350 aa32.39■■■□□ 2.78
HOXC13-201ENST00000243056 EIF4G1Q04637 1599 aaKnown RBP32.36■■■□□ 2.77
HOXC13-201ENST00000243056 SCAF1Q9H7N4 1312 aaKnown RBP32.3■■■□□ 2.76
HOXC13-201ENST00000243056 ATAD2BQ9ULI0 1458 aa32.24■■■□□ 2.75
HOXC13-201ENST00000243056 TOP2AP11388 1531 aaKnown RBP32.11■■■□□ 2.73
HOXC13-201ENST00000243056 PEG3Q9GZU2 1588 aa32.09■■■□□ 2.73
HOXC13-201ENST00000243056 BAZ1BQ9UIG0 1483 aaKnown RBP32.04■■■□□ 2.72
HOXC13-201ENST00000243056 SMARCA2P51531 1590 aa32.03■■■□□ 2.72
HOXC13-201ENST00000243056 CCDC88BA6NC98 1476 aa31.98■■■□□ 2.71
HOXC13-201ENST00000243056 CC2D2AQ9P2K1 1620 aa31.97■■■□□ 2.71
HOXC13-201ENST00000243056 CHIC1Q5VXU3 224 aa31.91■■■□□ 2.7
HOXC13-201ENST00000243056 NCAPD3P42695 1498 aa31.88■■■□□ 2.69
HOXC13-201ENST00000243056 DNAJC5BQ9UF47 199 aa31.78■■■□□ 2.68
HOXC13-201ENST00000243056 HMGXB3Q12766 1538 aa31.71■■■□□ 2.67
HOXC13-201ENST00000243056 TRIM41Q8WV44 630 aa31.43■■■□□ 2.62
HOXC13-201ENST00000243056 ABCC8Q09428 1581 aa31.39■■■□□ 2.61
HOXC13-201ENST00000243056 NESP48681 1621 aa31.19■■■□□ 2.58
HOXC13-201ENST00000243056 CFTRP13569 1480 aa31.17■■■□□ 2.58
HOXC13-201ENST00000243056 FAM9AQ8IZU1 332 aaPredicted RBP31.17■■■□□ 2.58
HOXC13-201ENST00000243056 ACIN1Q9UKV3 1341 aaKnown RBP31.17■■■□□ 2.58
HOXC13-201ENST00000243056 CADPSQ9ULU8 1353 aa31.16■■■□□ 2.58
HOXC13-201ENST00000243056 TRIM26Q12899 539 aaPredicted RBP31.09■■■□□ 2.57
HOXC13-201ENST00000243056 ZEB1P37275 1124 aaPredicted RBP31.07■■■□□ 2.56
HOXC13-201ENST00000243056 NEUROD1Q13562 356 aa31.07■■■□□ 2.56
HOXC13-201ENST00000243056 WRNQ14191 1432 aaPredicted RBP eCLIP31.03■■■□□ 2.56
HOXC13-201ENST00000243056 EHMT2Q96KQ7 1210 aa30.99■■■□□ 2.55
HOXC13-201ENST00000243056 LOC105371045A0A1W2PR82 267 aa30.96■■■□□ 2.55
HOXC13-201ENST00000243056 GTF3C3Q9Y5Q9 886 aa30.95■■■□□ 2.54
HOXC13-201ENST00000243056 SYNJ1O43426 1573 aa30.94■■■□□ 2.54
HOXC13-201ENST00000243056 FANCD2Q9BXW9 1451 aa30.85■■■□□ 2.53
HOXC13-201ENST00000243056 SOGA1O94964 1423 aa30.78■■■□□ 2.52
HOXC13-201ENST00000243056 CUX1P39880 1505 aa30.78■■■□□ 2.52
HOXC13-201ENST00000243056 TTBK1Q5TCY1 1321 aaPredicted RBP30.76■■■□□ 2.51
HOXC13-201ENST00000243056 LAMC3Q9Y6N6 1575 aa30.75■■■□□ 2.51
HOXC13-201ENST00000243056 RUSC2Q8N2Y8 1516 aa30.74■■■□□ 2.51
HOXC13-201ENST00000243056 PRDM2Q13029 1718 aa30.74■■■□□ 2.51
HOXC13-201ENST00000243056 TOP2BQ02880 1626 aa30.66■■■□□ 2.5
HOXC13-201ENST00000243056 PDS5BQ9NTI5 1447 aa30.62■■■□□ 2.49
HOXC13-201ENST00000243056 CEP164Q9UPV0 1460 aa30.6■■■□□ 2.49
HOXC13-201ENST00000243056 KIF21AQ7Z4S6 1674 aa30.58■■■□□ 2.49
HOXC13-201ENST00000243056 BIVM-ERCC5R4GMW8 1640 aa30.56■■■□□ 2.48
HOXC13-201ENST00000243056 CENPBP07199 599 aaPredicted RBP30.53■■■□□ 2.48
HOXC13-201ENST00000243056 URB2Q14146 1524 aaKnown RBP30.51■■■□□ 2.47
HOXC13-201ENST00000243056 FGD5Q6ZNL6 1462 aa30.48■■■□□ 2.47
HOXC13-201ENST00000243056 BCL11AQ9H165 835 aa30.47■■■□□ 2.47
HOXC13-201ENST00000243056 TOPBP1Q92547 1522 aa30.47■■■□□ 2.47
HOXC13-201ENST00000243056 CSRNP3Q8WYN3 585 aa30.44■■■□□ 2.46
HOXC13-201ENST00000243056 RAD54L2Q9Y4B4 1467 aa30.41■■■□□ 2.46
HOXC13-201ENST00000243056 DNMBPQ6XZF7 1577 aa30.39■■■□□ 2.45
HOXC13-201ENST00000243056 ERCC6Q03468 1493 aa30.38■■■□□ 2.45
HOXC13-201ENST00000243056 POLA1P09884 1462 aaPredicted RBP30.35■■■□□ 2.45
HOXC13-201ENST00000243056 CUX2O14529 1486 aa30.29■■■□□ 2.44
HOXC13-201ENST00000243056 MRC2Q9UBG0 1479 aa30.24■■■□□ 2.43
HOXC13-201ENST00000243056 EEA1Q15075 1411 aa30.22■■■□□ 2.43
HOXC13-201ENST00000243056 KIF27Q86VH2 1401 aa30.2■■■□□ 2.42
HOXC13-201ENST00000243056 UBTFP17480 764 aaKnown RBP30.18■■■□□ 2.42
HOXC13-201ENST00000243056 TDRD9Q8NDG6 1382 aaKnown RBP30.18■■■□□ 2.42
HOXC13-201ENST00000243056 DIEXFQ68CQ4 756 aaKnown RBP30.11■■■□□ 2.41
HOXC13-201ENST00000243056 RANGAP1P46060 587 aaPredicted RBP30.1■■■□□ 2.41
HOXC13-201ENST00000243056 RAPGEF2Q9Y4G8 1499 aa30.09■■■□□ 2.41
HOXC13-201ENST00000243056 IGF1RP08069 1367 aa30.08■■■□□ 2.41
HOXC13-201ENST00000243056 ABCA10Q8WWZ4 1543 aa30.06■■■□□ 2.4
HOXC13-201ENST00000243056 WDR62O43379 1518 aa30.04■■■□□ 2.4
HOXC13-201ENST00000243056 THOC2Q8NI27 1593 aaKnown RBP30.03■■■□□ 2.4
HOXC13-201ENST00000243056 AQRO60306 1485 aaKnown RBP eCLIP29.98■■■□□ 2.39
HOXC13-201ENST00000243056 GOLGA3Q08378 1498 aa29.98■■■□□ 2.39
HOXC13-201ENST00000243056 TARBP1Q13395 1621 aaKnown RBP29.96■■■□□ 2.39
HOXC13-201ENST00000243056 ZNF608Q9ULD9 1512 aaPredicted RBP29.95■■■□□ 2.39
HOXC13-201ENST00000243056 PRXQ9BXM0 1461 aa29.95■■■□□ 2.39
HOXC13-201ENST00000243056 PRKCSHP14314 528 aaPredicted RBP29.95■■■□□ 2.38
HOXC13-201ENST00000243056 KIF21BO75037 1637 aa29.9■■■□□ 2.38
HOXC13-201ENST00000243056 CARMIL1Q5VZK9 1371 aa29.9■■■□□ 2.38
HOXC13-201ENST00000243056 WDR97A6NE52 1622 aa29.9■■■□□ 2.38
HOXC13-201ENST00000243056 GAPVD1Q14C86 1478 aa29.89■■■□□ 2.37
HOXC13-201ENST00000243056 TNIKQ9UKE5 1360 aa29.87■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms