Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CPNE1Q99829 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CPNE1Q99829 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.84■□□□□ 0.93
CPNE1Q99829 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CPNE1Q99829 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CPNE1Q99829 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.84■□□□□ 0.93
CPNE1Q99829 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.84■□□□□ 0.93
CPNE1Q99829 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CPNE1Q99829 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
CPNE1Q99829 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CPNE1Q99829 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.83■□□□□ 0.93
CPNE1Q99829 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CPNE1Q99829 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.83■□□□□ 0.93
CPNE1Q99829 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.83■□□□□ 0.93
CPNE1Q99829 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.83■□□□□ 0.93
CPNE1Q99829 AC073314.1-201ENST00000568729 2216 ntBASIC20.83■□□□□ 0.93
CPNE1Q99829 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CPNE1Q99829 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CPNE1Q99829 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CPNE1Q99829 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.92
CPNE1Q99829 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CPNE1Q99829 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
CPNE1Q99829 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CPNE1Q99829 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.82■□□□□ 0.92
CPNE1Q99829 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.82■□□□□ 0.92
CPNE1Q99829 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CPNE1Q99829 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CPNE1Q99829 AC092667.1-201ENST00000434301 2586 ntBASIC20.82■□□□□ 0.92
CPNE1Q99829 AC091305.1-201ENST00000479476 895 ntBASIC20.82■□□□□ 0.92
CPNE1Q99829 AF213884.3-201ENST00000563833 479 ntBASIC20.82■□□□□ 0.92
CPNE1Q99829 EEF1DP3-203ENST00000566025 782 ntBASIC20.82■□□□□ 0.92
CPNE1Q99829 AC053503.5-201ENST00000601508 636 ntBASIC20.82■□□□□ 0.92
CPNE1Q99829 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.82■□□□□ 0.92
CPNE1Q99829 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CPNE1Q99829 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CPNE1Q99829 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CPNE1Q99829 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CPNE1Q99829 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.81■□□□□ 0.92
CPNE1Q99829 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CPNE1Q99829 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.81■□□□□ 0.92
CPNE1Q99829 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.81■□□□□ 0.92
CPNE1Q99829 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.81■□□□□ 0.92
CPNE1Q99829 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CPNE1Q99829 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CPNE1Q99829 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CPNE1Q99829 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.81■□□□□ 0.92
CPNE1Q99829 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
CPNE1Q99829 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.81■□□□□ 0.92
CPNE1Q99829 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CPNE1Q99829 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CPNE1Q99829 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CPNE1Q99829 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CPNE1Q99829 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CPNE1Q99829 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
CPNE1Q99829 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CPNE1Q99829 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CPNE1Q99829 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CPNE1Q99829 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.8■□□□□ 0.92
CPNE1Q99829 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.8■□□□□ 0.92
CPNE1Q99829 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.8■□□□□ 0.92
CPNE1Q99829 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CPNE1Q99829 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.8■□□□□ 0.92
CPNE1Q99829 AC012414.1-201ENST00000556676 535 ntBASIC20.8■□□□□ 0.92
CPNE1Q99829 AC110285.6-201ENST00000617652 491 ntBASIC20.8■□□□□ 0.92
CPNE1Q99829 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CPNE1Q99829 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CPNE1Q99829 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CPNE1Q99829 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CPNE1Q99829 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CPNE1Q99829 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
CPNE1Q99829 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CPNE1Q99829 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CPNE1Q99829 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CPNE1Q99829 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CPNE1Q99829 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CPNE1Q99829 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CPNE1Q99829 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.79■□□□□ 0.92
CPNE1Q99829 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CPNE1Q99829 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CPNE1Q99829 AC007225.1-201ENST00000566331 1836 ntBASIC20.79■□□□□ 0.92
CPNE1Q99829 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CPNE1Q99829 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CPNE1Q99829 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CPNE1Q99829 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.79■□□□□ 0.92
CPNE1Q99829 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.79■□□□□ 0.92
CPNE1Q99829 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.79■□□□□ 0.92
CPNE1Q99829 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.79■□□□□ 0.92
CPNE1Q99829 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.79■□□□□ 0.92
CPNE1Q99829 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
CPNE1Q99829 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CPNE1Q99829 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CPNE1Q99829 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CPNE1Q99829 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CPNE1Q99829 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CPNE1Q99829 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CPNE1Q99829 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CPNE1Q99829 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.78■□□□□ 0.92
CPNE1Q99829 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CPNE1Q99829 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CPNE1Q99829 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms